Wall clock time and date at job start Tue Mar 31 2020 10:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47241 * 2 1 4 4 C 1.46903 * 110.99890 * 300.79952 * 3 2 1 5 5 C 1.50708 * 109.46993 * 298.50469 * 4 3 2 6 6 H 1.08000 * 119.99760 * 4.89301 * 5 4 3 7 7 C 1.37873 * 119.99658 * 184.88710 * 5 4 3 8 8 N 1.31512 * 120.00127 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99808 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47032 * 90.00198 * 9 7 5 11 11 H 1.48501 * 109.47213 * 210.00497 * 9 7 5 12 12 H 1.48498 * 109.47091 * 330.00172 * 9 7 5 13 13 C 1.46896 * 111.00388 * 64.75250 * 3 2 1 14 14 C 1.50706 * 109.47063 * 66.04735 * 13 3 2 15 15 O 1.21296 * 119.99855 * 359.97438 * 14 13 3 16 16 N 1.34772 * 120.00167 * 180.27747 * 14 13 3 17 17 C 1.40081 * 120.00055 * 175.45412 * 16 14 13 18 18 C 1.38833 * 120.05022 * 34.55267 * 17 16 14 19 19 C 1.38116 * 119.96757 * 179.74659 * 18 17 16 20 20 C 1.38487 * 120.06595 * 0.54980 * 19 18 17 21 21 F 1.35101 * 119.95105 * 179.72036 * 20 19 18 22 22 C 1.38448 * 120.10060 * 359.70197 * 20 19 18 23 23 C 1.38227 * 120.03124 * 0.02562 * 22 20 19 24 24 Cl 1.73599 * 120.03555 * 179.97438 * 23 22 20 25 25 H 1.08996 * 109.47381 * 55.21613 * 1 2 3 26 26 H 1.09002 * 109.47406 * 175.22020 * 1 2 3 27 27 H 1.09001 * 109.46919 * 295.21336 * 1 2 3 28 28 H 1.08999 * 109.47046 * 239.99581 * 2 1 3 29 29 H 1.09008 * 109.47080 * 119.99848 * 2 1 3 30 30 H 1.09002 * 109.47033 * 58.50255 * 4 3 2 31 31 H 1.08997 * 109.47420 * 178.50690 * 4 3 2 32 32 H 0.97009 * 119.99734 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47375 * 306.05216 * 13 3 2 34 34 H 1.09000 * 109.47371 * 186.04224 * 13 3 2 35 35 H 0.97002 * 119.99693 * 355.44905 * 16 14 13 36 36 H 1.08002 * 120.01267 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.96849 * 180.25518 * 19 18 17 38 38 H 1.07998 * 119.98674 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5331 2.1154 -1.1780 5 6 2.0496 1.4522 -2.4290 6 1 2.6101 0.5317 -2.3600 7 6 1.8063 2.0207 -3.6612 8 7 1.1240 3.1419 -3.7450 9 14 2.4458 1.1984 -5.2118 10 1 1.4259 0.2491 -5.7253 11 1 2.7234 2.2316 -6.2417 12 1 3.6966 0.4608 -4.9011 13 6 1.6437 2.0763 1.2404 14 6 2.3598 1.4429 2.4054 15 8 3.1092 0.5073 2.2206 16 7 2.1628 1.9122 3.6533 17 6 2.7529 1.2647 4.7464 18 6 4.0042 0.6780 4.6142 19 6 4.5867 0.0445 5.6945 20 6 3.9189 -0.0159 6.9062 21 9 4.4884 -0.6411 7.9598 22 6 2.6687 0.5637 7.0397 23 6 2.0843 1.2036 5.9628 24 17 0.5164 1.9298 6.1298 25 1 -0.3634 0.5862 -0.8440 26 1 -0.3634 -1.0241 -0.0856 27 1 -0.3633 0.4378 0.9298 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.4431 2.1072 -1.1860 31 1 1.8885 3.1450 -1.1395 32 1 0.9532 3.5420 -4.6121 33 1 0.5669 1.9964 1.3889 34 1 1.9238 3.1274 1.1697 35 1 1.6124 2.6984 3.7946 36 1 4.5234 0.7201 3.6682 37 1 5.5619 -0.4083 5.5929 38 1 2.1497 0.5158 7.9856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:26 Heat of formation + Delta-G solvation = -46.912394 kcal Electronic energy + Delta-G solvation = -23396.675022 eV Core-core repulsion = 19601.024919 eV Total energy + Delta-G solvation = -3795.650103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.16422 -40.70834 -38.81820 -36.88603 -36.65748 -34.73103 -32.60855 -31.30149 -30.35797 -29.29528 -27.91635 -25.28627 -23.70599 -23.25843 -22.73580 -20.76308 -19.54179 -18.27867 -17.69517 -17.23130 -16.45309 -16.14673 -15.87304 -15.65839 -15.15027 -14.75254 -14.58387 -14.30225 -14.00890 -13.91325 -13.68241 -13.42633 -13.18679 -12.83226 -12.36139 -11.88447 -11.82932 -11.69027 -11.58186 -11.42540 -11.18312 -10.95768 -10.78557 -10.65952 -10.48695 -10.09931 -9.93746 -9.50323 -9.28783 -9.11620 -8.47412 -8.32112 -7.26497 -6.06449 -4.06706 0.62018 0.77830 1.64929 2.60113 2.81638 3.21658 3.31032 3.37466 3.42664 3.97226 4.34189 4.40633 4.57357 4.75704 4.85063 4.94717 5.10485 5.30968 5.32551 5.59374 5.59747 5.64770 5.78146 5.83866 5.91069 6.04172 6.11548 6.16423 6.44030 6.55651 6.66455 6.95979 7.15942 7.27179 7.33250 7.74472 7.99372 8.12248 8.18707 8.48017 9.00273 9.57425 11.04717 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.024494 B = 0.002884 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.840736 B = 9705.416002 C =10341.899807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 N -0.516 5.516 4 C 0.190 3.810 5 C -0.505 4.505 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.034 3.966 14 C 0.518 3.482 15 O -0.494 6.494 16 N -0.679 5.679 17 C 0.161 3.839 18 C -0.084 4.084 19 C -0.126 4.126 20 C 0.088 3.912 21 F -0.136 7.136 22 C -0.128 4.128 23 C -0.045 4.045 24 Cl -0.053 7.053 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.068 0.932 30 H -0.002 1.002 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.413 0.587 36 H 0.163 0.837 37 H 0.145 0.855 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 -2.017 21.875 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.074 4.074 3 N -0.241 5.241 4 C 0.066 3.934 5 C -0.543 4.543 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.097 4.097 14 C 0.307 3.693 15 O -0.366 6.366 16 N -0.327 5.327 17 C 0.065 3.935 18 C -0.104 4.104 19 C -0.146 4.146 20 C 0.068 3.932 21 F -0.114 7.114 22 C -0.148 4.148 23 C -0.074 4.074 24 Cl -0.024 7.024 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.015 0.985 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.250 0.750 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.641 -2.518 21.503 21.712 hybrid contribution -1.059 0.097 -0.485 1.168 sum 0.582 -2.421 21.018 21.165 Atomic orbital electron populations 1.22420 0.99679 1.01451 1.01327 1.22138 0.91578 0.90906 1.02738 1.62160 1.59452 1.02219 1.00223 1.19838 0.93777 0.94033 0.85800 1.21133 1.34188 1.09032 0.89986 0.91740 1.24956 0.95370 0.94990 0.99181 1.69948 1.40428 1.18729 1.24813 0.86504 0.79349 0.79023 0.82618 1.20756 1.21277 1.19709 1.21958 0.97706 0.99741 0.90321 1.21360 0.81745 0.83282 0.82921 1.90648 1.34930 1.27197 1.83822 1.43817 1.52131 1.31660 1.05066 1.17565 0.92093 0.97549 0.86341 1.21288 0.92381 0.96673 1.00044 1.21220 1.01437 1.00898 0.91016 1.17410 0.92697 0.98304 0.84820 1.91515 1.84381 1.80163 1.55379 1.20735 0.94897 0.99799 0.99389 1.20434 0.88902 1.03347 0.94749 1.98385 1.24688 1.81563 1.97778 0.90941 0.93272 0.94425 0.89947 0.91332 0.98488 0.94872 0.92922 0.92014 0.88041 0.75014 0.81934 0.83696 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.39 9.25 37.16 0.34 -3.05 16 2 C 0.05 1.08 5.44 -3.83 -0.02 1.06 16 3 N -0.52 -10.75 4.48 -237.51 -1.06 -11.81 16 4 C 0.19 4.67 4.38 -4.97 -0.02 4.65 16 5 C -0.50 -13.77 8.60 -34.44 -0.30 -14.07 16 6 H 0.06 1.77 6.60 -52.49 -0.35 1.42 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 9 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.03 0.55 5.28 -4.98 -0.03 0.53 16 14 C 0.52 7.72 7.36 -10.98 -0.08 7.64 16 15 O -0.49 -8.78 11.75 5.54 0.07 -8.72 16 16 N -0.68 -7.82 5.05 -9.82 -0.05 -7.87 16 17 C 0.16 1.85 6.31 -83.61 -0.53 1.32 16 18 C -0.08 -0.97 8.70 -39.41 -0.34 -1.31 16 19 C -0.13 -1.26 10.02 -39.53 -0.40 -1.65 16 20 C 0.09 0.88 7.30 -39.41 -0.29 0.59 16 21 F -0.14 -1.39 17.26 2.25 0.04 -1.35 16 22 C -0.13 -1.20 9.80 -39.51 -0.39 -1.59 16 23 C -0.04 -0.45 6.34 -39.33 -0.25 -0.70 16 24 Cl -0.05 -0.48 27.95 -51.86 -1.45 -1.93 16 25 H 0.07 1.47 6.11 -51.93 -0.32 1.15 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.60 6.63 -51.93 -0.34 0.26 16 28 H 0.08 1.78 6.49 -51.93 -0.34 1.44 16 29 H 0.07 1.32 5.82 -51.92 -0.30 1.02 16 30 H 0.00 -0.06 6.10 -51.93 -0.32 -0.38 16 31 H 0.03 0.87 8.02 -51.93 -0.42 0.45 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.06 0.92 6.26 -51.93 -0.33 0.59 16 34 H 0.10 1.49 7.99 -51.93 -0.42 1.08 16 35 H 0.41 3.76 8.08 -40.82 -0.33 3.43 16 36 H 0.16 2.12 6.19 -52.49 -0.33 1.79 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -30.13 331.73 -8.31 -38.44 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.18 Total: 2.22 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.39 Total: -5.13 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.38 Total: -44.89 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.07 Total: -8.72 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.45 Total: -1.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.13 -8.31 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.469 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds