Wall clock time and date at job start Tue Mar 31 2020 10:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47241 * 2 1 4 4 C 1.46903 * 110.99890 * 300.79952 * 3 2 1 5 5 C 1.50708 * 109.46993 * 298.50469 * 4 3 2 6 6 H 1.08000 * 119.99760 * 4.89301 * 5 4 3 7 7 C 1.37873 * 119.99658 * 184.88710 * 5 4 3 8 8 N 1.31512 * 120.00127 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99808 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47032 * 90.00198 * 9 7 5 11 11 H 1.48501 * 109.47213 * 210.00497 * 9 7 5 12 12 H 1.48498 * 109.47091 * 330.00172 * 9 7 5 13 13 C 1.46896 * 111.00388 * 64.75250 * 3 2 1 14 14 C 1.50706 * 109.47063 * 66.04735 * 13 3 2 15 15 O 1.21296 * 119.99855 * 359.97438 * 14 13 3 16 16 N 1.34772 * 120.00167 * 180.27747 * 14 13 3 17 17 C 1.40081 * 120.00055 * 175.45412 * 16 14 13 18 18 C 1.38833 * 120.05022 * 34.55267 * 17 16 14 19 19 C 1.38116 * 119.96757 * 179.74659 * 18 17 16 20 20 C 1.38487 * 120.06595 * 0.54980 * 19 18 17 21 21 F 1.35101 * 119.95105 * 179.72036 * 20 19 18 22 22 C 1.38448 * 120.10060 * 359.70197 * 20 19 18 23 23 C 1.38227 * 120.03124 * 0.02562 * 22 20 19 24 24 Cl 1.73599 * 120.03555 * 179.97438 * 23 22 20 25 25 H 1.08996 * 109.47381 * 55.21613 * 1 2 3 26 26 H 1.09002 * 109.47406 * 175.22020 * 1 2 3 27 27 H 1.09001 * 109.46919 * 295.21336 * 1 2 3 28 28 H 1.08999 * 109.47046 * 239.99581 * 2 1 3 29 29 H 1.09008 * 109.47080 * 119.99848 * 2 1 3 30 30 H 1.09002 * 109.47033 * 58.50255 * 4 3 2 31 31 H 1.08997 * 109.47420 * 178.50690 * 4 3 2 32 32 H 0.97009 * 119.99734 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47375 * 306.05216 * 13 3 2 34 34 H 1.09000 * 109.47371 * 186.04224 * 13 3 2 35 35 H 0.97002 * 119.99693 * 355.44905 * 16 14 13 36 36 H 1.08002 * 120.01267 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.96849 * 180.25518 * 19 18 17 38 38 H 1.07998 * 119.98674 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5331 2.1154 -1.1780 5 6 2.0496 1.4522 -2.4290 6 1 2.6101 0.5317 -2.3600 7 6 1.8063 2.0207 -3.6612 8 7 1.1240 3.1419 -3.7450 9 14 2.4458 1.1984 -5.2118 10 1 1.4259 0.2491 -5.7253 11 1 2.7234 2.2316 -6.2417 12 1 3.6966 0.4608 -4.9011 13 6 1.6437 2.0763 1.2404 14 6 2.3598 1.4429 2.4054 15 8 3.1092 0.5073 2.2206 16 7 2.1628 1.9122 3.6533 17 6 2.7529 1.2647 4.7464 18 6 4.0042 0.6780 4.6142 19 6 4.5867 0.0445 5.6945 20 6 3.9189 -0.0159 6.9062 21 9 4.4884 -0.6411 7.9598 22 6 2.6687 0.5637 7.0397 23 6 2.0843 1.2036 5.9628 24 17 0.5164 1.9298 6.1298 25 1 -0.3634 0.5862 -0.8440 26 1 -0.3634 -1.0241 -0.0856 27 1 -0.3633 0.4378 0.9298 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.4431 2.1072 -1.1860 31 1 1.8885 3.1450 -1.1395 32 1 0.9532 3.5420 -4.6121 33 1 0.5669 1.9964 1.3889 34 1 1.9238 3.1274 1.1697 35 1 1.6124 2.6984 3.7946 36 1 4.5234 0.7201 3.6682 37 1 5.5619 -0.4083 5.5929 38 1 2.1497 0.5158 7.9856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:26 Heat of formation + Delta-G solvation = -65.534331 kcal Electronic energy + Delta-G solvation = -23397.482530 eV Core-core repulsion = 19601.024919 eV Total energy + Delta-G solvation = -3796.457610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.96233 -41.76274 -39.88401 -38.24949 -37.56279 -35.79308 -34.67383 -32.10866 -31.60793 -30.70233 -29.46791 -26.87923 -25.03297 -24.57182 -23.72921 -22.01699 -20.99688 -19.17177 -18.62514 -18.41201 -18.16862 -17.37730 -17.04918 -16.67850 -16.50092 -16.15949 -15.94799 -15.44404 -15.32453 -14.92300 -14.64158 -14.58853 -14.29348 -14.14508 -14.01667 -13.44223 -13.10510 -12.99348 -12.71285 -12.70396 -12.54598 -12.50457 -12.42038 -12.18024 -11.88987 -11.62625 -11.40290 -11.28315 -10.69252 -10.57834 -10.07684 -9.21480 -8.91273 -8.18149 -6.25091 -0.21081 -0.03405 0.86612 1.42098 1.43161 1.46889 1.54396 1.78769 2.36612 2.43072 3.14946 3.17225 3.37237 3.54830 3.65562 3.87733 4.05639 4.20705 4.25435 4.26814 4.43319 4.50876 4.55335 4.67396 4.81603 4.89000 4.96832 5.01499 5.06446 5.21962 5.29022 5.39718 5.51401 5.67731 5.69251 6.04512 6.22417 6.35348 6.64097 6.89191 7.05373 7.43431 8.92805 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.024494 B = 0.002884 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.840736 B = 9705.416002 C =10341.899807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 N -0.533 5.533 4 C 0.207 3.793 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.033 3.967 14 C 0.527 3.473 15 O -0.527 6.527 16 N -0.663 5.663 17 C 0.145 3.855 18 C -0.095 4.095 19 C -0.123 4.123 20 C 0.087 3.913 21 F -0.136 7.136 22 C -0.121 4.121 23 C -0.043 4.043 24 Cl -0.042 7.042 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.077 0.923 30 H -0.015 1.015 31 H 0.011 0.989 32 H 0.264 0.736 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.425 0.575 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -2.511 23.406 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.068 4.068 3 N -0.257 5.257 4 C 0.081 3.919 5 C -0.559 4.559 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.195 1.195 13 C -0.099 4.099 14 C 0.315 3.685 15 O -0.401 6.401 16 N -0.311 5.311 17 C 0.049 3.951 18 C -0.116 4.116 19 C -0.142 4.142 20 C 0.067 3.933 21 F -0.115 7.115 22 C -0.141 4.141 23 C -0.072 4.072 24 Cl -0.013 7.013 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.003 0.997 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.264 0.736 36 H 0.163 0.837 37 H 0.179 0.821 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.332 -2.999 23.082 23.314 hybrid contribution -0.961 0.255 -0.813 1.285 sum 0.371 -2.744 22.268 22.440 Atomic orbital electron populations 1.22289 0.98062 1.02298 1.01143 1.22041 0.92853 0.90167 1.01782 1.61952 1.60113 1.02683 1.00926 1.19459 0.92669 0.92946 0.86821 1.21439 1.34000 1.08920 0.91499 0.92534 1.25744 0.95566 0.95552 1.02228 1.70048 1.41497 1.19937 1.25625 0.85518 0.78852 0.78181 0.78898 1.19940 1.20735 1.19453 1.22012 0.98983 1.00034 0.88835 1.20966 0.81209 0.82766 0.83552 1.90646 1.36342 1.28708 1.84429 1.43487 1.51730 1.31753 1.04116 1.17652 0.92429 0.98371 0.86623 1.21179 0.92799 0.97695 0.99913 1.21350 1.02053 1.00246 0.90590 1.17474 0.92919 0.98195 0.84691 1.91520 1.84434 1.80170 1.55332 1.20964 0.94573 0.98607 0.99961 1.20422 0.89304 1.03206 0.94277 1.98393 1.23831 1.81344 1.97715 0.93721 0.91447 0.92311 0.92556 0.90503 0.99740 0.97074 0.92742 0.90221 0.86855 0.73572 0.83651 0.82109 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.26 9.25 71.98 0.67 -5.59 16 2 C 0.06 2.36 5.44 86.30 0.47 2.83 16 3 N -0.53 -22.37 4.48 -905.35 -4.05 -26.42 16 4 C 0.21 10.39 4.38 85.56 0.37 10.77 16 5 C -0.52 -28.96 8.60 25.60 0.22 -28.74 16 6 H 0.06 3.17 6.60 -2.91 -0.02 3.15 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 9 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 C 0.03 1.02 5.28 85.56 0.45 1.47 16 14 C 0.53 15.26 7.36 87.66 0.65 15.90 16 15 O -0.53 -18.64 11.75 -3.08 -0.04 -18.67 16 16 N -0.66 -14.35 5.05 -303.35 -1.53 -15.88 16 17 C 0.15 3.13 6.31 38.13 0.24 3.37 16 18 C -0.10 -2.15 8.70 22.38 0.19 -1.95 16 19 C -0.12 -2.28 10.02 22.30 0.22 -2.06 16 20 C 0.09 1.56 7.30 22.38 0.16 1.72 16 21 F -0.14 -2.49 17.26 44.97 0.78 -1.72 16 22 C -0.12 -1.96 9.80 22.32 0.22 -1.74 16 23 C -0.04 -0.77 6.34 22.43 0.14 -0.63 16 24 Cl -0.04 -0.66 27.95 -2.72 -0.08 -0.74 16 25 H 0.04 1.81 6.11 -2.39 -0.01 1.80 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 1.77 6.63 -2.39 -0.02 1.76 16 28 H 0.06 2.49 6.49 -2.39 -0.02 2.47 16 29 H 0.08 2.94 5.82 -2.38 -0.01 2.92 16 30 H -0.01 -0.78 6.10 -2.39 -0.01 -0.79 16 31 H 0.01 0.60 8.02 -2.39 -0.02 0.58 16 32 H 0.26 14.56 8.31 -92.70 -0.77 13.78 16 33 H 0.08 2.24 6.26 -2.39 -0.01 2.22 16 34 H 0.11 3.26 7.99 -2.39 -0.02 3.24 16 35 H 0.43 6.96 8.08 -92.71 -0.75 6.21 16 36 H 0.15 3.83 6.19 -2.91 -0.02 3.82 16 37 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -64.73 331.73 2.23 -62.50 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.37 Total: 12.61 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.47 Total: -3.77 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -5.30 Total: -96.37 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.04 Total: -18.67 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -64.73 2.23 -62.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.033 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds