Wall clock time and date at job start Tue Mar 31 2020 10:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47350 * 2 1 4 4 C 1.50707 * 109.46793 * 240.00523 * 2 1 3 5 5 O 1.21296 * 119.99589 * 245.72978 * 4 2 1 6 6 N 1.34770 * 120.00313 * 65.73400 * 4 2 1 7 7 C 1.40038 * 120.00030 * 175.91806 * 6 4 2 8 8 C 1.38800 * 120.07134 * 34.40117 * 7 6 4 9 9 C 1.38251 * 119.93850 * 179.74275 * 8 7 6 10 10 Cl 1.73598 * 119.95369 * 180.27537 * 9 8 7 11 11 C 1.38393 * 120.08830 * 0.50687 * 9 8 7 12 12 C 1.38252 * 120.14102 * 359.76629 * 11 9 8 13 13 C 1.38308 * 120.06130 * 359.97438 * 12 11 9 14 14 F 1.35095 * 120.04314 * 179.97438 * 13 12 11 15 15 N 1.46896 * 109.47421 * 120.00109 * 2 1 3 16 16 C 1.46893 * 111.00254 * 285.21807 * 15 2 1 17 17 C 1.46901 * 110.99692 * 49.17542 * 15 2 1 18 18 C 1.50707 * 109.47103 * 169.99889 * 17 15 2 19 19 H 1.07998 * 119.99523 * 0.02562 * 18 17 15 20 20 C 1.37873 * 120.00050 * 179.72181 * 18 17 15 21 21 N 1.31514 * 119.99910 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99988 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47321 * 89.99920 * 22 20 18 24 24 H 1.48502 * 109.47095 * 209.99948 * 22 20 18 25 25 H 1.48503 * 109.47362 * 330.00099 * 22 20 18 26 26 H 1.09001 * 109.47350 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47260 * 299.99976 * 1 2 3 28 28 H 1.09006 * 109.47678 * 59.99448 * 1 2 3 29 29 H 0.97000 * 119.99882 * 355.91620 * 6 4 2 30 30 H 1.07995 * 120.02628 * 359.97438 * 8 7 6 31 31 H 1.07995 * 119.92989 * 179.74543 * 11 9 8 32 32 H 1.08006 * 119.96995 * 179.97438 * 12 11 9 33 33 H 1.09004 * 109.47488 * 189.03884 * 16 15 2 34 34 H 1.08997 * 109.47220 * 309.03829 * 16 15 2 35 35 H 1.09008 * 109.47025 * 69.04025 * 16 15 2 36 36 H 1.08996 * 109.47344 * 50.00103 * 17 15 2 37 37 H 1.09001 * 109.47010 * 289.99611 * 17 15 2 38 38 H 0.97001 * 119.99950 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.6414 -1.7536 -1.1224 6 7 1.8046 -0.1864 -2.4513 7 6 2.3440 -0.8003 -3.5884 8 6 2.4671 -2.1818 -3.6407 9 6 2.9952 -2.7854 -4.7668 10 17 3.1427 -4.5137 -4.8355 11 6 3.4107 -2.0133 -5.8376 12 6 3.2949 -0.6365 -5.7870 13 6 2.7626 -0.0268 -4.6655 14 9 2.6501 1.3186 -4.6163 15 7 2.0196 -0.6925 1.1994 16 6 1.8558 0.1453 2.3948 17 6 1.3498 -1.9888 1.3691 18 6 2.0414 -2.7734 2.4542 19 1 2.8929 -2.3509 2.9668 20 6 1.5830 -4.0277 2.7969 21 7 0.5426 -4.5398 2.1765 22 14 2.4397 -4.9998 4.1424 23 1 1.8165 -4.6860 5.4532 24 1 2.3054 -6.4525 3.8656 25 1 3.8785 -4.6336 4.1781 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 1.2670 0.6159 -2.5421 30 1 2.1473 -2.7849 -2.8039 31 1 3.8266 -2.4872 -6.7143 32 1 3.6205 -0.0366 -6.6240 33 1 2.3680 -0.3195 3.2373 34 1 2.2825 1.1309 2.2090 35 1 0.7951 0.2461 2.6252 36 1 1.3943 -2.5461 0.4334 37 1 0.3082 -1.8261 1.6460 38 1 0.2199 -5.4221 2.4178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:55 Heat of formation + Delta-G solvation = -44.260582 kcal Electronic energy + Delta-G solvation = -23980.298007 eV Core-core repulsion = 20184.762895 eV Total energy + Delta-G solvation = -3795.535112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.10560 -40.51174 -38.78480 -36.79119 -36.31984 -34.65891 -32.64500 -30.99506 -30.43617 -29.13780 -27.23793 -25.33460 -24.20355 -23.27769 -22.53140 -21.01192 -19.45323 -18.24801 -17.34469 -17.01284 -16.54915 -16.29152 -15.74630 -15.54042 -14.78723 -14.65364 -14.30630 -14.09092 -13.96364 -13.70580 -13.41620 -13.28396 -12.81867 -12.71082 -12.23418 -12.02232 -11.90217 -11.83383 -11.56636 -11.29505 -11.02607 -10.99396 -10.88001 -10.55577 -10.51248 -10.26552 -9.83857 -9.44541 -9.02069 -8.85437 -8.35082 -8.25981 -7.28184 -5.95006 -3.94099 0.75881 0.96270 2.01751 2.81218 2.93670 3.35587 3.36436 3.42868 3.48106 3.95834 4.46270 4.48164 4.76898 4.81083 4.92816 5.05568 5.19291 5.34655 5.35850 5.42239 5.53237 5.77379 5.79738 5.87776 5.93285 6.01515 6.09840 6.16505 6.27148 6.42689 6.67126 6.71027 7.22868 7.32191 7.40848 7.83889 8.14265 8.18841 8.37359 8.59278 9.11337 9.68331 11.16423 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.013205 B = 0.004290 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.910649 B = 6524.726042 C = 8223.823106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 H 0.095 0.905 4 C 0.516 3.484 5 O -0.469 6.469 6 N -0.680 5.680 7 C 0.144 3.856 8 C -0.090 4.090 9 C -0.024 4.024 10 Cl -0.056 7.056 11 C -0.106 4.106 12 C -0.124 4.124 13 C 0.067 3.933 14 F -0.135 7.135 15 N -0.521 5.521 16 C 0.040 3.960 17 C 0.189 3.811 18 C -0.500 4.500 19 H 0.061 0.939 20 C 0.055 3.945 21 N -0.900 5.900 22 Si 0.896 3.104 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.273 1.273 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.411 0.589 30 H 0.165 0.835 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.018 0.982 36 H 0.047 0.953 37 H -0.008 1.008 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 10.659 -16.336 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.044 4.044 3 H 0.113 0.887 4 C 0.303 3.697 5 O -0.338 6.338 6 N -0.328 5.328 7 C 0.047 3.953 8 C -0.111 4.111 9 C -0.052 4.052 10 Cl -0.027 7.027 11 C -0.126 4.126 12 C -0.144 4.144 13 C 0.045 3.955 14 F -0.114 7.114 15 N -0.245 5.245 16 C -0.108 4.108 17 C 0.065 3.935 18 C -0.539 4.539 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.540 5.540 22 Si 0.724 3.276 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.248 0.752 30 H 0.183 0.817 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.010 0.990 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.177 9.531 -16.179 18.904 hybrid contribution -0.752 0.075 0.753 1.067 sum 1.425 9.606 -15.427 18.229 Atomic orbital electron populations 1.22429 0.95582 1.04100 1.02026 1.21542 0.93991 0.97830 0.91001 0.88685 1.21121 0.79287 0.85859 0.83453 1.90780 1.36739 1.21034 1.85249 1.43665 1.53485 1.31182 1.04435 1.17582 0.99045 0.91452 0.87268 1.21275 0.98874 0.92724 0.98195 1.20786 1.02843 0.85747 0.95790 1.98394 1.96429 1.09533 1.98390 1.20837 1.00992 0.92447 0.98335 1.20851 1.01265 0.94784 0.97457 1.17515 1.04500 0.76954 0.96519 1.91483 1.94174 1.28895 1.96812 1.62117 1.57783 1.05013 0.99591 1.22231 0.98911 0.95566 0.94126 1.19916 0.91478 0.83524 0.98599 1.21108 1.14058 1.00685 1.18044 0.92099 1.24935 0.95209 0.97519 0.96881 1.69951 1.24803 1.17285 1.41938 0.86534 0.80093 0.79199 0.81809 1.20879 1.21306 1.19806 0.90530 0.91299 0.92797 0.75222 0.81727 0.84011 0.83618 0.90479 0.93687 0.96368 0.93532 0.99027 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 8.33 37.15 0.31 -2.40 16 2 C 0.07 1.16 2.70 -68.87 -0.19 0.97 16 3 H 0.10 1.29 7.85 -51.93 -0.41 0.89 16 4 C 0.52 9.09 6.69 -10.98 -0.07 9.02 16 5 O -0.47 -10.47 11.95 5.54 0.07 -10.40 16 6 N -0.68 -9.27 5.20 -9.81 -0.05 -9.32 16 7 C 0.14 1.99 6.32 -83.60 -0.53 1.46 16 8 C -0.09 -1.36 8.48 -39.37 -0.33 -1.70 16 9 C -0.02 -0.31 6.32 -39.52 -0.25 -0.56 16 10 Cl -0.06 -0.74 28.95 -51.86 -1.50 -2.24 16 11 C -0.11 -1.07 9.82 -39.52 -0.39 -1.46 16 12 C -0.12 -1.19 10.02 -39.55 -0.40 -1.59 16 13 C 0.07 0.79 7.31 -39.25 -0.29 0.50 16 14 F -0.13 -1.53 16.95 2.25 0.04 -1.49 16 15 N -0.52 -11.11 4.40 -237.73 -1.05 -12.16 16 16 C 0.04 0.74 9.02 60.06 0.54 1.28 16 17 C 0.19 4.93 3.26 -4.97 -0.02 4.92 16 18 C -0.50 -14.39 8.58 -34.44 -0.30 -14.69 16 19 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 22 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.08 1.39 6.53 -51.93 -0.34 1.05 16 27 H 0.07 0.98 7.08 -51.93 -0.37 0.62 16 28 H 0.05 0.60 7.85 -51.93 -0.41 0.19 16 29 H 0.41 4.26 8.37 -40.82 -0.34 3.91 16 30 H 0.17 3.00 6.19 -52.49 -0.32 2.68 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.08 1.54 7.01 -51.93 -0.36 1.17 16 34 H 0.04 0.68 7.90 -51.93 -0.41 0.27 16 35 H 0.02 0.32 7.13 -51.92 -0.37 -0.05 16 36 H 0.05 1.34 6.05 -51.93 -0.31 1.03 16 37 H -0.01 -0.21 6.79 -51.93 -0.35 -0.57 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -33.09 334.19 -8.09 -41.18 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.35 Total: 1.38 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.00 Total: -2.74 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.36 Total: -47.98 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.09 -8.09 -41.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.076 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds