Wall clock time and date at job start Tue Mar 31 2020 10:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47350 * 2 1 4 4 C 1.50707 * 109.46793 * 240.00523 * 2 1 3 5 5 O 1.21296 * 119.99589 * 245.72978 * 4 2 1 6 6 N 1.34770 * 120.00313 * 65.73400 * 4 2 1 7 7 C 1.40038 * 120.00030 * 175.91806 * 6 4 2 8 8 C 1.38800 * 120.07134 * 34.40117 * 7 6 4 9 9 C 1.38251 * 119.93850 * 179.74275 * 8 7 6 10 10 Cl 1.73598 * 119.95369 * 180.27537 * 9 8 7 11 11 C 1.38393 * 120.08830 * 0.50687 * 9 8 7 12 12 C 1.38252 * 120.14102 * 359.76629 * 11 9 8 13 13 C 1.38308 * 120.06130 * 359.97438 * 12 11 9 14 14 F 1.35095 * 120.04314 * 179.97438 * 13 12 11 15 15 N 1.46896 * 109.47421 * 120.00109 * 2 1 3 16 16 C 1.46893 * 111.00254 * 285.21807 * 15 2 1 17 17 C 1.46901 * 110.99692 * 49.17542 * 15 2 1 18 18 C 1.50707 * 109.47103 * 169.99889 * 17 15 2 19 19 H 1.07998 * 119.99523 * 0.02562 * 18 17 15 20 20 C 1.37873 * 120.00050 * 179.72181 * 18 17 15 21 21 N 1.31514 * 119.99910 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99988 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47321 * 89.99920 * 22 20 18 24 24 H 1.48502 * 109.47095 * 209.99948 * 22 20 18 25 25 H 1.48503 * 109.47362 * 330.00099 * 22 20 18 26 26 H 1.09001 * 109.47350 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47260 * 299.99976 * 1 2 3 28 28 H 1.09006 * 109.47678 * 59.99448 * 1 2 3 29 29 H 0.97000 * 119.99882 * 355.91620 * 6 4 2 30 30 H 1.07995 * 120.02628 * 359.97438 * 8 7 6 31 31 H 1.07995 * 119.92989 * 179.74543 * 11 9 8 32 32 H 1.08006 * 119.96995 * 179.97438 * 12 11 9 33 33 H 1.09004 * 109.47488 * 189.03884 * 16 15 2 34 34 H 1.08997 * 109.47220 * 309.03829 * 16 15 2 35 35 H 1.09008 * 109.47025 * 69.04025 * 16 15 2 36 36 H 1.08996 * 109.47344 * 50.00103 * 17 15 2 37 37 H 1.09001 * 109.47010 * 289.99611 * 17 15 2 38 38 H 0.97001 * 119.99950 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.6414 -1.7536 -1.1224 6 7 1.8046 -0.1864 -2.4513 7 6 2.3440 -0.8003 -3.5884 8 6 2.4671 -2.1818 -3.6407 9 6 2.9952 -2.7854 -4.7668 10 17 3.1427 -4.5137 -4.8355 11 6 3.4107 -2.0133 -5.8376 12 6 3.2949 -0.6365 -5.7870 13 6 2.7626 -0.0268 -4.6655 14 9 2.6501 1.3186 -4.6163 15 7 2.0196 -0.6925 1.1994 16 6 1.8558 0.1453 2.3948 17 6 1.3498 -1.9888 1.3691 18 6 2.0414 -2.7734 2.4542 19 1 2.8929 -2.3509 2.9668 20 6 1.5830 -4.0277 2.7969 21 7 0.5426 -4.5398 2.1765 22 14 2.4397 -4.9998 4.1424 23 1 1.8165 -4.6860 5.4532 24 1 2.3054 -6.4525 3.8656 25 1 3.8785 -4.6336 4.1781 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 1.2670 0.6159 -2.5421 30 1 2.1473 -2.7849 -2.8039 31 1 3.8266 -2.4872 -6.7143 32 1 3.6205 -0.0366 -6.6240 33 1 2.3680 -0.3195 3.2373 34 1 2.2825 1.1309 2.2090 35 1 0.7951 0.2461 2.6252 36 1 1.3943 -2.5461 0.4334 37 1 0.3082 -1.8261 1.6460 38 1 0.2199 -5.4221 2.4178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:55 Heat of formation + Delta-G solvation = -67.228805 kcal Electronic energy + Delta-G solvation = -23981.293984 eV Core-core repulsion = 20184.762895 eV Total energy + Delta-G solvation = -3796.531088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.01492 -41.76048 -39.92343 -38.20590 -37.45816 -35.89858 -34.77456 -32.31618 -31.50148 -30.26527 -29.20933 -26.78508 -25.75442 -24.53649 -23.69129 -22.45557 -20.84215 -19.34097 -18.65448 -18.32001 -18.18378 -17.47044 -16.76623 -16.71461 -16.47400 -16.14755 -15.74097 -15.45959 -15.27734 -15.06773 -14.54076 -14.38422 -14.33844 -14.02851 -13.70919 -13.51648 -13.22248 -13.00921 -12.88683 -12.79563 -12.72475 -12.47674 -12.32041 -12.23834 -12.05812 -11.78184 -11.45378 -11.30559 -10.71055 -10.52028 -9.87672 -9.30742 -8.96596 -8.17984 -6.25488 -0.20751 -0.00134 1.02159 1.37017 1.40037 1.50922 1.53183 1.79525 2.36750 2.40565 3.00491 3.15231 3.33626 3.54701 3.66153 3.95484 4.02780 4.06247 4.08980 4.28185 4.52823 4.59831 4.64212 4.68031 4.83839 4.86356 4.94586 5.07415 5.10706 5.12521 5.18819 5.29071 5.43289 5.64640 5.68687 6.07773 6.24891 6.36969 6.63860 6.89362 7.12389 7.42247 8.93303 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.013205 B = 0.004290 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.910649 B = 6524.726042 C = 8223.823106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.067 3.933 3 H 0.140 0.860 4 C 0.514 3.486 5 O -0.528 6.528 6 N -0.662 5.662 7 C 0.121 3.879 8 C -0.115 4.115 9 C -0.036 4.036 10 Cl -0.066 7.066 11 C -0.090 4.090 12 C -0.106 4.106 13 C 0.074 3.926 14 F -0.129 7.129 15 N -0.541 5.541 16 C 0.042 3.958 17 C 0.214 3.786 18 C -0.520 4.520 19 H 0.057 0.943 20 C 0.000 4.000 21 N -0.935 5.935 22 Si 0.964 3.036 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.269 1.269 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.428 0.572 30 H 0.123 0.877 31 H 0.176 0.824 32 H 0.189 0.811 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.021 0.979 36 H 0.009 0.991 37 H -0.029 1.029 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 13.110 -17.893 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.045 4.045 3 H 0.157 0.843 4 C 0.302 3.698 5 O -0.401 6.401 6 N -0.311 5.311 7 C 0.025 3.975 8 C -0.136 4.136 9 C -0.063 4.063 10 Cl -0.037 7.037 11 C -0.109 4.109 12 C -0.125 4.125 13 C 0.052 3.948 14 F -0.107 7.107 15 N -0.265 5.265 16 C -0.106 4.106 17 C 0.088 3.912 18 C -0.558 4.558 19 H 0.075 0.925 20 C -0.197 4.197 21 N -0.576 5.576 22 Si 0.789 3.211 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.194 1.194 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.268 0.732 30 H 0.141 0.859 31 H 0.194 0.806 32 H 0.206 0.794 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.040 0.960 36 H 0.027 0.973 37 H -0.012 1.012 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.043 12.046 -17.763 21.677 hybrid contribution -1.016 -0.601 1.099 1.613 sum 2.026 11.446 -16.664 20.317 Atomic orbital electron populations 1.22328 0.94104 1.02066 1.04606 1.21750 0.95132 0.99029 0.88625 0.84299 1.21368 0.78484 0.85147 0.84827 1.90771 1.39675 1.23435 1.86190 1.43352 1.53078 1.31235 1.03453 1.17687 1.00535 0.91247 0.88030 1.20996 1.01103 0.93424 0.98106 1.20943 1.03550 0.85559 0.96248 1.98385 1.96492 1.10478 1.98393 1.21228 0.99078 0.92586 0.98009 1.21322 0.98963 0.94689 0.97499 1.17557 1.03978 0.77038 0.96189 1.91504 1.94085 1.28367 1.96780 1.61873 1.58042 1.04335 1.02280 1.22245 0.99239 0.96718 0.92361 1.19376 0.90342 0.85744 0.95742 1.21502 1.14056 1.01498 1.18752 0.92499 1.25850 0.95882 0.98652 0.99332 1.70088 1.26283 1.17709 1.43537 0.85461 0.78998 0.77451 0.79189 1.19237 1.20972 1.19390 0.94813 0.90324 0.88534 0.73218 0.85948 0.80617 0.79413 0.92698 0.89371 0.96019 0.97275 1.01162 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 8.33 71.98 0.60 -4.42 16 2 C 0.07 2.19 2.70 44.17 0.12 2.31 16 3 H 0.14 3.32 7.85 -2.39 -0.02 3.30 16 4 C 0.51 18.60 6.69 87.66 0.59 19.19 16 5 O -0.53 -25.21 11.95 -3.08 -0.04 -25.25 16 6 N -0.66 -17.80 5.20 -303.32 -1.58 -19.37 16 7 C 0.12 3.33 6.32 38.16 0.24 3.57 16 8 C -0.12 -3.67 8.48 22.41 0.19 -3.48 16 9 C -0.04 -0.92 6.32 22.31 0.14 -0.78 16 10 Cl -0.07 -1.79 28.95 -2.72 -0.08 -1.86 16 11 C -0.09 -1.55 9.82 22.31 0.22 -1.34 16 12 C -0.11 -1.61 10.02 22.29 0.22 -1.39 16 13 C 0.07 1.54 7.31 22.48 0.16 1.71 16 14 F -0.13 -2.47 16.95 44.97 0.76 -1.71 16 15 N -0.54 -23.49 4.40 -906.05 -3.98 -27.47 16 16 C 0.04 1.52 9.02 127.69 1.15 2.67 16 17 C 0.21 11.77 3.26 85.56 0.28 12.05 16 18 C -0.52 -31.11 8.58 25.60 0.22 -30.89 16 19 H 0.06 3.36 7.10 -2.91 -0.02 3.34 16 20 C 0.00 0.01 5.46 84.65 0.46 0.47 16 21 N -0.94 -59.00 13.29 21.45 0.28 -58.71 16 22 Si 0.96 46.78 29.54 68.60 2.03 48.81 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 26 H 0.03 1.27 6.53 -2.39 -0.02 1.26 16 27 H 0.08 2.14 7.08 -2.39 -0.02 2.12 16 28 H 0.10 1.94 7.85 -2.38 -0.02 1.92 16 29 H 0.43 8.03 8.37 -92.71 -0.78 7.26 16 30 H 0.12 5.00 6.19 -2.91 -0.02 4.98 16 31 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.05 2.20 7.01 -2.38 -0.02 2.18 16 34 H 0.09 2.40 7.90 -2.39 -0.02 2.38 16 35 H 0.02 0.75 7.13 -2.38 -0.02 0.74 16 36 H 0.01 0.57 6.05 -2.39 -0.01 0.56 16 37 H -0.03 -1.68 6.79 -2.39 -0.02 -1.70 16 38 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -78.37 334.19 2.33 -76.04 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.34 Total: 9.88 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 4.60 Total: -0.34 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -5.28 Total: -105.56 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.04 Total: -25.25 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.76 Total: -1.71 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.86 kcal Total: -78.37 2.33 -76.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.812 kcal (2) G-P(sol) polarization free energy of solvation -78.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds