Wall clock time and date at job start Tue Mar 31 2020 10:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47288 * 2 1 4 4 N 1.46500 * 109.47183 * 239.99835 * 2 1 3 5 5 C 1.39737 * 119.99960 * 85.00107 * 4 2 1 6 6 C 1.38926 * 120.04868 * 359.97438 * 5 4 2 7 7 C 1.38112 * 119.98832 * 180.02562 * 6 5 4 8 8 C 1.38352 * 120.08290 * 359.74191 * 7 6 5 9 9 Cl 1.73598 * 119.95040 * 180.27739 * 8 7 6 10 10 C 1.38591 * 120.09773 * 0.51036 * 8 7 6 11 11 F 1.35104 * 119.99093 * 179.76496 * 10 8 7 12 12 C 1.38327 * 120.01561 * 359.49264 * 10 8 7 13 13 C 1.50705 * 109.47258 * 120.00018 * 2 1 3 14 14 O 1.21276 * 119.99888 * 120.00375 * 13 2 1 15 15 N 1.34770 * 119.99641 * 299.99840 * 13 2 1 16 16 C 1.46498 * 120.00360 * 0.02562 * 15 13 2 17 17 C 1.46507 * 119.99825 * 179.97438 * 15 13 2 18 18 C 1.50702 * 109.47033 * 90.00188 * 17 15 13 19 19 H 1.07996 * 120.00101 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99894 * 179.97438 * 18 17 15 21 21 N 1.31517 * 119.99794 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46955 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46725 * 120.00053 * 22 20 18 25 25 H 1.48497 * 109.47316 * 240.00332 * 22 20 18 26 26 H 1.08997 * 109.46862 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46873 * 299.99852 * 1 2 3 28 28 H 1.09000 * 109.46659 * 60.00145 * 1 2 3 29 29 H 0.96993 * 120.00292 * 264.99833 * 4 2 1 30 30 H 1.08007 * 120.00971 * 0.03987 * 6 5 4 31 31 H 1.07999 * 119.96227 * 180.02562 * 7 6 5 32 32 H 1.07995 * 120.04400 * 180.23130 * 12 10 8 33 33 H 1.08997 * 109.47534 * 89.99465 * 16 15 13 34 34 H 1.09004 * 109.47560 * 209.99646 * 16 15 13 35 35 H 1.08996 * 109.47352 * 329.99588 * 16 15 13 36 36 H 1.09000 * 109.46944 * 210.00408 * 17 15 13 37 37 H 1.08995 * 109.46830 * 329.99959 * 17 15 13 38 38 H 0.97005 * 119.99436 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1518 0.0064 -2.3999 6 6 1.8212 1.3543 -2.4635 7 6 1.9531 2.0419 -3.6540 8 6 2.4193 1.3915 -4.7826 9 17 2.5906 2.2609 -6.2754 10 6 2.7452 0.0457 -4.7244 11 9 3.1958 -0.5885 -5.8290 12 6 2.6146 -0.6470 -3.5342 13 6 2.0324 -0.7104 1.2305 14 8 2.7297 -1.6964 1.1192 15 7 1.7068 -0.2499 2.4545 16 6 0.8641 0.9409 2.5889 17 6 2.1947 -0.9408 3.6507 18 6 3.5224 -0.3579 4.0611 19 1 3.9589 0.4470 3.4885 20 6 4.1794 -0.8514 5.1683 21 7 3.6475 -1.8313 5.8659 22 14 5.8255 -0.1293 5.6766 23 1 6.2033 0.9537 4.7334 24 1 5.7196 0.4256 7.0500 25 1 6.8617 -1.1927 5.6508 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.2491 -1.6317 -1.1526 30 1 1.4613 1.8644 -1.5822 31 1 1.6964 3.0898 -3.7030 32 1 2.8720 -1.6948 -3.4873 33 1 -0.1837 0.6426 2.6224 34 1 1.1218 1.4665 3.5084 35 1 1.0272 1.5996 1.7360 36 1 1.4766 -0.8153 4.4611 37 1 2.3154 -2.0021 3.4335 38 1 4.1100 -2.1788 6.6447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112530572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:57 Heat of formation + Delta-G solvation = -71.520389 kcal Electronic energy + Delta-G solvation = -23340.985641 eV Core-core repulsion = 19544.268456 eV Total energy + Delta-G solvation = -3796.717185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.00280 -41.30502 -40.12018 -37.67917 -36.76777 -36.41864 -34.78956 -32.71845 -31.47170 -29.78185 -28.96362 -27.59075 -25.76871 -24.36580 -24.03970 -22.49873 -20.28896 -19.31759 -18.69011 -18.21196 -17.63019 -17.49242 -17.05616 -16.80031 -16.48413 -16.39528 -16.08412 -15.30860 -14.96830 -14.85247 -14.45127 -14.30642 -14.25566 -14.04332 -13.56440 -13.55229 -13.39857 -13.07299 -13.05988 -12.83579 -12.69861 -12.60366 -12.41766 -12.30316 -12.16958 -11.81634 -11.67873 -10.92981 -10.66354 -10.60274 -9.93469 -9.46343 -8.54395 -8.24446 -6.38785 0.09695 0.23584 1.17187 1.35953 1.38436 1.49518 1.71539 1.92707 2.35427 2.51672 2.55958 3.06029 3.18705 3.51257 3.68289 3.92871 4.08947 4.14030 4.21426 4.28261 4.44499 4.65343 4.71975 4.81010 4.82194 4.95838 4.99211 5.00105 5.11983 5.15510 5.21403 5.30736 5.52599 5.56106 5.79518 6.03565 6.10574 6.50424 6.67784 6.74900 7.24183 7.38952 8.82752 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002768 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.046818 B =10113.379939 C =10461.721179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 H 0.128 0.872 4 N -0.722 5.722 5 C 0.253 3.747 6 C -0.195 4.195 7 C -0.023 4.023 8 C -0.147 4.147 9 Cl -0.066 7.066 10 C 0.143 3.857 11 F -0.138 7.138 12 C -0.234 4.234 13 C 0.490 3.510 14 O -0.593 6.593 15 N -0.601 5.601 16 C 0.068 3.932 17 C 0.258 3.742 18 C -0.541 4.541 19 H 0.054 0.946 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.269 1.269 25 H -0.284 1.284 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.405 0.595 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.028 0.972 37 H -0.002 1.002 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.133 11.378 -18.230 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.145 0.855 4 N -0.349 5.349 5 C 0.147 3.853 6 C -0.218 4.218 7 C -0.042 4.042 8 C -0.177 4.177 9 Cl -0.038 7.038 10 C 0.123 3.877 11 F -0.117 7.117 12 C -0.258 4.258 13 C 0.278 3.722 14 O -0.474 6.474 15 N -0.331 5.331 16 C -0.073 4.073 17 C 0.137 3.863 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.191 4.191 21 N -0.568 5.568 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.210 1.210 26 H 0.069 0.931 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.242 0.758 30 H 0.181 0.819 31 H 0.187 0.813 32 H 0.159 0.841 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.809 10.923 -18.081 22.888 hybrid contribution 1.357 -0.931 0.318 1.676 sum -7.453 9.992 -17.763 21.700 Atomic orbital electron populations 1.22483 0.90811 1.03618 1.05782 1.20872 0.96957 0.97245 0.81682 0.85478 1.44672 1.71181 1.13083 1.05982 1.17674 0.90995 0.91806 0.84856 1.21004 1.08918 0.92025 0.99859 1.20965 0.93267 1.01128 0.88814 1.20802 1.14656 0.91463 0.90763 1.98352 1.96825 1.75820 1.32757 1.17172 0.98154 0.89432 0.82981 1.91498 1.86531 1.82197 1.51451 1.20469 1.12321 1.01996 0.91020 1.21273 0.80218 0.84849 0.85843 1.90648 1.40428 1.29480 1.86887 1.48063 1.49814 1.29481 1.05756 1.22250 0.94446 0.86349 1.04294 1.18791 0.93808 0.91727 0.81997 1.21731 1.05888 1.19061 1.11299 0.92732 1.25833 1.01689 0.95257 0.96345 1.70052 1.40617 1.27241 1.18894 0.85400 0.78861 0.78283 0.78462 1.19041 1.19419 1.21045 0.93053 0.88098 0.88641 0.75817 0.81933 0.81264 0.84055 0.90035 0.91373 0.88127 0.95392 0.98426 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.06 71.98 0.65 -2.12 16 2 C 0.14 3.28 1.87 44.25 0.08 3.36 16 3 H 0.13 2.33 5.74 -2.39 -0.01 2.32 16 4 N -0.72 -17.51 5.13 -322.48 -1.65 -19.16 16 5 C 0.25 5.34 6.64 38.19 0.25 5.59 16 6 C -0.20 -3.14 8.85 22.40 0.20 -2.94 16 7 C -0.02 -0.35 9.82 22.27 0.22 -0.13 16 8 C -0.15 -2.96 6.33 22.38 0.14 -2.82 16 9 Cl -0.07 -1.29 28.61 -2.72 -0.08 -1.37 16 10 C 0.14 3.29 7.27 22.38 0.16 3.46 16 11 F -0.14 -3.46 16.83 44.97 0.76 -2.71 16 12 C -0.23 -5.25 9.87 22.44 0.22 -5.03 16 13 C 0.49 18.19 7.14 87.66 0.63 18.81 16 14 O -0.59 -28.51 15.42 -3.02 -0.05 -28.56 16 15 N -0.60 -22.76 2.86 -851.14 -2.43 -25.20 16 16 C 0.07 1.64 8.80 127.77 1.12 2.77 16 17 C 0.26 13.20 5.16 85.63 0.44 13.64 16 18 C -0.54 -30.03 9.39 25.60 0.24 -29.79 16 19 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 20 C 0.01 0.44 5.46 84.65 0.46 0.90 16 21 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 22 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.34 4.53 -2.39 -0.01 1.33 16 28 H 0.09 1.11 7.71 -2.39 -0.02 1.09 16 29 H 0.41 11.29 7.80 -92.71 -0.72 10.57 16 30 H 0.16 1.76 6.11 -2.91 -0.02 1.74 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.08 1.51 6.95 -2.39 -0.02 1.50 16 34 H 0.07 1.80 8.07 -2.38 -0.02 1.78 16 35 H 0.10 1.60 6.01 -2.39 -0.01 1.59 16 36 H 0.03 1.44 8.07 -2.39 -0.02 1.43 16 37 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 38 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -72.39 337.44 4.08 -68.32 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.39 Total: 11.68 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.83 Total: 5.71 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -3.80 Total: -99.03 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.76 Total: -2.71 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -72.39 4.08 -68.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112530572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.202 kcal (2) G-P(sol) polarization free energy of solvation -72.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds