Wall clock time and date at job start Tue Mar 31 2020 10:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36932 * 120.00478 * 2 1 4 4 H 1.08010 * 119.99826 * 322.04425 * 3 2 1 5 5 C 1.38809 * 120.00401 * 142.04440 * 3 2 1 6 6 N 1.31619 * 120.00100 * 157.04819 * 5 3 2 7 7 Si 1.86799 * 120.00077 * 337.04966 * 5 3 2 8 8 H 1.48497 * 109.47035 * 95.68240 * 7 5 3 9 9 H 1.48498 * 109.47323 * 215.68895 * 7 5 3 10 10 H 1.48505 * 109.46762 * 335.68717 * 7 5 3 11 11 C 1.46504 * 120.00007 * 180.02562 * 2 1 3 12 12 C 1.50704 * 109.47378 * 89.99591 * 11 2 1 13 13 O 1.21284 * 119.99590 * 0.02562 * 12 11 2 14 14 N 1.34773 * 120.00341 * 179.97438 * 12 11 2 15 15 C 1.46499 * 119.99670 * 0.02562 * 14 12 11 16 16 C 1.46493 * 119.99932 * 180.02562 * 14 12 11 17 17 C 1.50698 * 109.47450 * 270.00088 * 16 14 12 18 18 C 1.38461 * 120.01780 * 90.00254 * 17 16 14 19 19 F 1.35095 * 120.02142 * 359.97438 * 18 17 16 20 20 C 1.38453 * 119.96277 * 179.97438 * 18 17 16 21 21 C 1.38226 * 119.99824 * 359.97438 * 20 18 17 22 22 C 1.38194 * 120.04092 * 0.02562 * 21 20 18 23 23 C 1.38290 * 120.02502 * 269.72638 * 17 16 14 24 24 Cl 1.73606 * 119.99582 * 0.02562 * 23 17 16 25 25 H 1.09003 * 109.47578 * 265.87588 * 1 2 3 26 26 H 1.09008 * 109.46986 * 25.87285 * 1 2 3 27 27 H 1.09002 * 109.47659 * 145.87186 * 1 2 3 28 28 H 0.97000 * 120.00075 * 179.97438 * 6 5 3 29 29 H 1.09005 * 109.46963 * 330.00056 * 11 2 1 30 30 H 1.08995 * 109.47827 * 210.00092 * 11 2 1 31 31 H 1.09002 * 109.47022 * 269.99177 * 15 14 12 32 32 H 1.09005 * 109.47529 * 29.99717 * 15 14 12 33 33 H 1.09002 * 109.46859 * 149.99729 * 15 14 12 34 34 H 1.08996 * 109.47140 * 30.00439 * 16 14 12 35 35 H 1.09003 * 109.46813 * 150.00480 * 16 14 12 36 36 H 1.07996 * 119.99621 * 179.97438 * 20 18 17 37 37 H 1.08003 * 119.97689 * 180.02562 * 21 20 18 38 38 H 1.07998 * 119.98558 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7810 2.0223 -0.5753 5 6 3.3176 1.3129 0.7393 6 7 4.2042 2.2306 0.4166 7 14 3.6310 0.1816 2.1924 8 1 4.4688 -0.9641 1.7559 9 1 4.3373 0.9326 3.2612 10 1 2.3358 -0.3231 2.7151 11 6 2.1975 -1.2688 -0.0006 12 6 2.4486 -1.7033 -1.4216 13 8 2.0548 -1.0201 -2.3431 14 7 3.1115 -2.8504 -1.6684 15 6 3.5876 -3.6753 -0.5552 16 6 3.3561 -3.2724 -3.0497 17 6 2.2097 -4.1279 -3.5241 18 6 1.1175 -3.5422 -4.1414 19 9 1.0785 -2.2035 -4.3183 20 6 0.0652 -4.3294 -4.5772 21 6 0.1057 -5.6992 -4.3966 22 6 1.1958 -6.2838 -3.7805 23 6 2.2506 -5.4990 -3.3484 24 17 3.6226 -6.2351 -2.5804 25 1 -0.3634 -0.0739 1.0250 26 1 -0.3633 0.9247 -0.4485 27 1 -0.3634 -0.8507 -0.5766 28 1 5.0202 2.3197 0.9335 29 1 1.6083 -2.0287 0.5129 30 1 3.1498 -1.1388 0.5133 31 1 4.5955 -3.3658 -0.2788 32 1 2.9222 -3.5515 0.2993 33 1 3.5992 -4.7224 -0.8580 34 1 3.4420 -2.3934 -3.6884 35 1 4.2813 -3.8468 -3.0957 36 1 -0.7873 -3.8731 -5.0584 37 1 -0.7152 -6.3129 -4.7371 38 1 1.2264 -7.3541 -3.6394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120752941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:55 Heat of formation + Delta-G solvation = -15.658899 kcal Electronic energy + Delta-G solvation = -24808.218864 eV Core-core repulsion = 21013.924015 eV Total energy + Delta-G solvation = -3794.294849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.69998 -39.77470 -38.76211 -36.75578 -35.65393 -34.78260 -32.12543 -31.53296 -30.59991 -28.29424 -26.98255 -26.03026 -25.13550 -22.99468 -22.13605 -21.14527 -18.99374 -17.76430 -17.12072 -16.71492 -16.25412 -16.24667 -15.82374 -15.36263 -15.05650 -14.91943 -14.58658 -13.84478 -13.60287 -13.52616 -13.30281 -13.05128 -12.83486 -12.63232 -12.52756 -12.29867 -12.15972 -11.82643 -11.64073 -11.55162 -11.33257 -11.27717 -10.89468 -10.74790 -10.49468 -10.13771 -9.63242 -9.30988 -8.90907 -8.83896 -8.48365 -8.26461 -6.81170 -5.98180 -3.38057 0.74911 0.87226 1.76660 3.11197 3.22370 3.38454 3.44805 3.51979 3.62619 4.18626 4.45515 4.49586 4.55428 4.66792 4.96676 4.99818 5.21043 5.23293 5.33930 5.39542 5.58551 5.66744 5.71902 5.75936 5.83713 5.91160 5.94809 6.01130 6.05965 6.20407 6.33800 6.55710 6.66315 6.77509 6.87414 7.83380 8.06691 8.42962 8.88507 9.07019 9.70387 10.09648 11.17597 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.004881 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.771260 B = 5735.110656 C = 6548.744321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.079 0.921 5 C 0.033 3.967 6 N -0.894 5.894 7 Si 0.867 3.133 8 H -0.285 1.285 9 H -0.296 1.296 10 H -0.266 1.266 11 C 0.122 3.878 12 C 0.483 3.517 13 O -0.500 6.500 14 N -0.625 5.625 15 C 0.072 3.928 16 C 0.150 3.850 17 C -0.131 4.131 18 C 0.138 3.862 19 F -0.105 7.105 20 C -0.157 4.157 21 C -0.079 4.079 22 C -0.130 4.130 23 C 0.000 4.000 24 Cl -0.056 7.056 25 H 0.011 0.989 26 H 0.048 0.952 27 H 0.026 0.974 28 H 0.263 0.737 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.694 -21.608 -7.267 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.307 5.307 3 C -0.387 4.387 4 H 0.097 0.903 5 C -0.167 4.167 6 N -0.535 5.535 7 Si 0.697 3.303 8 H -0.213 1.213 9 H -0.224 1.224 10 H -0.191 1.191 11 C -0.008 4.008 12 C 0.269 3.731 13 O -0.372 6.372 14 N -0.362 5.362 15 C -0.072 4.072 16 C 0.027 3.973 17 C -0.134 4.134 18 C 0.118 3.882 19 F -0.083 7.083 20 C -0.176 4.176 21 C -0.098 4.098 22 C -0.148 4.148 23 C -0.027 4.027 24 Cl -0.027 7.027 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.676 -21.035 -7.627 22.859 hybrid contribution 0.562 -0.583 0.853 1.176 sum -4.115 -21.618 -6.774 23.026 Atomic orbital electron populations 1.21051 0.83587 0.99580 0.97179 1.43698 1.01084 1.01057 1.84870 1.18808 1.06339 0.90115 1.23477 0.90297 1.25473 0.96650 0.96631 0.97955 1.69906 1.08265 1.36186 1.39145 0.87057 0.78083 0.80265 0.84937 1.21284 1.22400 1.19083 1.21388 0.98389 0.89806 0.91218 1.23066 0.76502 0.78815 0.94729 1.90656 1.48593 1.51856 1.46055 1.48332 1.59385 1.23818 1.04699 1.21943 0.99783 0.95668 0.89760 1.20160 0.93599 0.98169 0.85389 1.20297 0.98523 0.93198 1.01412 1.17493 0.94279 0.78743 0.97698 1.91709 1.96089 1.28087 1.92373 1.21326 0.98878 0.94370 1.03055 1.20920 0.97715 0.93867 0.97297 1.21026 0.92918 1.00380 1.00526 1.20545 0.90630 0.91833 0.99738 1.98359 1.42946 1.82015 1.79361 0.97121 0.93293 0.95558 0.92711 0.91556 0.90150 0.92826 0.91271 0.91007 0.88472 0.89373 0.84154 0.84217 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.84 10.70 59.84 0.64 3.48 16 2 N -0.59 -14.90 1.96 -182.50 -0.36 -15.26 16 3 C -0.26 -7.62 9.88 -15.06 -0.15 -7.77 16 4 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 5 C 0.03 0.98 5.29 -17.43 -0.09 0.89 16 6 N -0.89 -27.93 13.97 55.49 0.78 -27.15 16 7 Si 0.87 21.73 25.10 -169.99 -4.27 17.46 16 8 H -0.28 -6.71 6.68 56.52 0.38 -6.34 16 9 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 C 0.12 2.75 3.57 -5.19 -0.02 2.73 16 12 C 0.48 10.59 7.74 -10.99 -0.09 10.50 16 13 O -0.50 -12.64 13.74 5.55 0.08 -12.56 16 14 N -0.62 -10.92 2.86 -182.96 -0.52 -11.45 16 15 C 0.07 1.01 10.24 59.85 0.61 1.63 16 16 C 0.15 2.33 5.01 -5.20 -0.03 2.30 16 17 C -0.13 -1.82 5.47 -104.52 -0.57 -2.39 16 18 C 0.14 2.02 7.24 -39.42 -0.29 1.73 16 19 F -0.10 -1.91 14.20 2.25 0.03 -1.88 16 20 C -0.16 -1.73 10.03 -39.51 -0.40 -2.13 16 21 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 22 C -0.13 -1.18 9.83 -39.54 -0.39 -1.57 16 23 C 0.00 0.00 6.31 -39.51 -0.25 -0.25 16 24 Cl -0.06 -0.57 24.56 -51.86 -1.27 -1.84 16 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.05 1.06 8.01 -51.92 -0.42 0.64 16 27 H 0.03 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.07 1.28 7.33 -51.93 -0.38 0.90 16 30 H 0.08 1.91 3.34 -51.93 -0.17 1.73 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.94 6.44 -51.93 -0.33 0.60 16 33 H 0.07 0.85 5.02 -51.93 -0.26 0.59 16 34 H 0.10 1.72 6.92 -51.93 -0.36 1.36 16 35 H 0.09 1.15 6.82 -51.93 -0.35 0.80 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -34.75 327.45 -6.40 -41.16 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -4.40 Total: -1.49 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -1.41 Total: 8.08 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.10 Total: -53.86 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.03 Total: -1.88 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.27 Total: 17.46 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.27 Total: -1.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.75 -6.40 -41.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120752941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.499 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds