Wall clock time and date at job start Tue Mar 31 2020 10:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47290 * 2 1 4 4 C 1.36943 * 120.00027 * 269.42708 * 3 2 1 5 5 H 1.07994 * 119.99946 * 326.11424 * 4 3 2 6 6 C 1.38810 * 119.99621 * 146.11730 * 4 3 2 7 7 N 1.31613 * 120.00524 * 336.57444 * 6 4 3 8 8 Si 1.86803 * 119.99751 * 156.57424 * 6 4 3 9 9 H 1.48494 * 109.47421 * 89.99622 * 8 6 4 10 10 H 1.48503 * 109.47450 * 210.00032 * 8 6 4 11 11 H 1.48500 * 109.47020 * 329.99704 * 8 6 4 12 12 C 1.46502 * 120.00064 * 89.42599 * 3 2 1 13 13 C 1.50692 * 109.47331 * 90.00088 * 12 3 2 14 14 N 1.29907 * 124.85979 * 89.72282 * 13 12 3 15 15 C 1.36058 * 108.80040 * 179.83932 * 14 13 12 16 16 C 1.39585 * 133.79854 * 180.09590 * 15 14 13 17 17 C 1.37692 * 119.72623 * 180.35343 * 16 15 14 18 18 C 1.50699 * 119.79017 * 179.97438 * 17 16 15 19 19 F 1.39904 * 109.46989 * 89.99809 * 18 17 16 20 20 F 1.39899 * 109.47208 * 210.00331 * 18 17 16 21 21 F 1.39900 * 109.47119 * 330.00125 * 18 17 16 22 22 C 1.38719 * 120.42033 * 359.97438 * 17 16 15 23 23 C 1.37913 * 120.47702 * 359.97438 * 22 17 16 24 24 C 1.38667 * 119.87227 * 0.03646 * 23 22 17 25 25 O 1.34233 * 124.85484 * 270.03025 * 13 12 3 26 26 H 1.09003 * 109.47179 * 59.99770 * 1 2 3 27 27 H 1.09005 * 109.47159 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47349 * 299.99708 * 1 2 3 29 29 H 1.09006 * 109.46871 * 240.00132 * 2 1 3 30 30 H 1.08994 * 109.47135 * 120.00438 * 2 1 3 31 31 H 0.96999 * 120.00599 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.46943 * 210.00239 * 12 3 2 33 33 H 1.09008 * 109.46671 * 329.99924 * 12 3 2 34 34 H 1.07998 * 120.14147 * 0.32395 * 16 15 14 35 35 H 1.08001 * 119.76002 * 180.02562 * 22 17 16 36 36 H 1.07991 * 120.06052 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2578 2.0228 -1.1859 5 1 2.6233 1.4667 -2.0365 6 6 2.0307 3.3879 -1.2946 7 7 1.1868 3.9818 -0.4777 8 14 2.9230 4.3820 -2.6003 9 1 2.1157 4.4001 -3.8465 10 1 3.1181 5.7725 -2.1166 11 1 4.2448 3.7639 -2.8758 12 6 2.2506 2.0760 1.2687 13 6 3.6696 1.8407 1.7179 14 7 4.6824 2.5905 1.4021 15 6 5.8023 2.0827 1.9845 16 6 7.1446 2.4653 1.9939 17 6 8.0634 1.7157 2.6939 18 6 9.5131 2.1272 2.7045 19 9 9.7449 2.9907 3.7806 20 9 10.3192 0.9914 2.8359 21 9 9.8209 2.7815 1.5069 22 6 7.6630 0.5843 3.3894 23 6 6.3399 0.1951 3.3898 24 6 5.4013 0.9381 2.6899 25 8 4.0689 0.8231 2.4969 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.0278 4.9356 -0.5539 32 1 2.0848 3.1448 1.1332 33 1 1.5625 1.6944 2.0231 34 1 7.4615 3.3453 1.4540 35 1 8.3925 0.0044 3.9353 36 1 6.0356 -0.6867 3.9339 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126097877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:20 Heat of formation + Delta-G solvation = -108.808301 kcal Electronic energy + Delta-G solvation = -25914.393681 eV Core-core repulsion = 21564.262890 eV Total energy + Delta-G solvation = -4350.130791 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.23206 -48.74341 -48.68447 -44.26388 -39.42543 -37.95999 -35.75639 -33.88189 -32.77117 -32.02680 -30.50580 -28.67307 -26.91578 -25.63288 -23.77706 -23.52375 -22.93267 -21.86257 -19.96556 -19.55715 -19.51245 -18.98674 -18.60837 -17.81614 -17.34571 -16.88596 -16.01453 -15.79992 -15.67958 -15.66988 -15.48114 -15.29683 -15.12337 -15.01288 -14.84498 -14.83152 -14.42278 -14.18083 -13.70695 -13.54132 -13.31461 -13.19168 -12.97713 -12.69238 -12.61155 -12.54968 -12.34653 -12.20003 -11.99602 -11.58152 -11.43768 -10.64338 -10.18273 -9.59183 -8.87046 -8.02163 -5.54272 -0.46011 -0.27803 1.31463 1.42110 1.45523 1.47119 1.54267 1.58523 2.26473 2.45112 2.53520 2.81648 3.09722 3.25920 3.34183 3.36820 3.57960 3.79229 3.94240 4.07205 4.20905 4.40168 4.47333 4.56779 4.77141 4.82117 4.85145 4.90714 5.02751 5.06178 5.17025 5.27252 5.32702 5.37336 5.56294 5.67160 6.31170 6.71374 6.97329 7.64899 8.13549 9.00016 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.004025 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.274479 B = 6955.659489 C = 8119.084965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.134 3.866 3 N -0.577 5.577 4 C -0.274 4.274 5 H 0.056 0.944 6 C -0.011 4.011 7 N -0.901 5.901 8 Si 0.947 3.053 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.285 1.285 12 C 0.217 3.783 13 C 0.261 3.739 14 N -0.516 5.516 15 C -0.007 4.007 16 C -0.028 4.028 17 C -0.184 4.184 18 C 0.525 3.475 19 F -0.175 7.175 20 F -0.167 7.167 21 F -0.182 7.182 22 C -0.051 4.051 23 C -0.076 4.076 24 C 0.004 3.996 25 O -0.219 6.219 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.259 0.741 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.190 0.810 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.172 -8.274 10.501 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.009 3.991 3 N -0.297 5.297 4 C -0.404 4.404 5 H 0.073 0.927 6 C -0.210 4.210 7 N -0.543 5.543 8 Si 0.775 3.225 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.211 1.211 12 C 0.088 3.912 13 C 0.047 3.953 14 N -0.246 5.246 15 C -0.118 4.118 16 C -0.047 4.047 17 C -0.187 4.187 18 C 0.470 3.530 19 F -0.157 7.157 20 F -0.149 7.149 21 F -0.163 7.163 22 C -0.069 4.069 23 C -0.094 4.094 24 C -0.047 4.047 25 O -0.110 6.110 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.103 0.897 34 H 0.160 0.840 35 H 0.207 0.793 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 12.082 -7.590 10.086 17.472 hybrid contribution 0.502 0.581 -0.652 1.007 sum 12.583 -7.009 9.433 17.218 Atomic orbital electron populations 1.22069 0.97238 1.00715 1.00771 1.21154 0.93709 0.84481 0.99723 1.44039 1.72708 1.11927 1.01013 1.19103 1.38649 0.91935 0.90717 0.92668 1.25513 0.96829 0.98920 0.99713 1.69931 1.32691 1.10717 1.40988 0.85624 0.78991 0.78226 0.79657 1.20299 1.21469 1.21067 1.19979 0.80581 1.03138 0.87551 1.29509 1.00603 0.80081 0.85112 1.70765 0.98128 1.30799 1.24866 1.20230 0.94849 0.96180 1.00545 1.20022 0.88507 0.99446 0.96750 1.19798 0.91564 1.00953 1.06383 1.17878 0.86659 0.74857 0.73562 1.93236 1.95447 1.70911 1.56059 1.93202 1.75562 1.50540 1.95550 1.93203 1.94173 1.81959 1.46984 1.21084 0.95561 0.93901 0.96403 1.20246 0.89154 1.00656 0.99360 1.21140 0.83203 0.98698 1.01683 1.84607 1.21570 1.46994 1.57867 0.94882 0.91035 0.93811 0.93517 0.92502 0.93182 0.86406 0.89682 0.84029 0.79270 0.80179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 10.24 71.98 0.74 -4.49 16 2 C 0.13 5.18 6.39 86.38 0.55 5.73 16 3 N -0.58 -27.28 2.44 -706.35 -1.72 -29.00 16 4 C -0.27 -14.59 9.48 84.03 0.80 -13.79 16 5 H 0.06 2.99 7.93 -2.91 -0.02 2.97 16 6 C -0.01 -0.57 4.94 84.86 0.42 -0.15 16 7 N -0.90 -49.54 11.34 21.65 0.25 -49.29 16 8 Si 0.95 45.02 29.61 68.60 2.03 47.05 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 12 C 0.22 9.80 5.92 85.63 0.51 10.31 16 13 C 0.26 11.33 7.82 88.39 0.69 12.02 16 14 N -0.52 -23.69 11.34 -296.28 -3.36 -27.05 16 15 C -0.01 -0.25 7.24 39.32 0.28 0.03 16 16 C -0.03 -0.88 9.44 22.47 0.21 -0.67 16 17 C -0.18 -4.42 5.45 -19.88 -0.11 -4.53 16 18 C 0.52 11.33 3.36 71.24 0.24 11.56 16 19 F -0.18 -3.83 17.30 44.97 0.78 -3.05 16 20 F -0.17 -3.18 16.44 44.97 0.74 -2.44 16 21 F -0.18 -4.42 16.44 44.97 0.74 -3.68 16 22 C -0.05 -0.97 9.38 22.31 0.21 -0.76 16 23 C -0.08 -1.68 10.06 22.30 0.22 -1.45 16 24 C 0.00 0.15 7.43 22.88 0.17 0.32 16 25 O -0.22 -8.26 10.77 -10.02 -0.11 -8.37 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.80 8.04 -2.38 -0.02 1.78 16 30 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 31 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 32 H 0.12 6.10 5.33 -2.39 -0.01 6.08 16 33 H 0.09 3.36 8.07 -2.38 -0.02 3.34 16 34 H 0.14 4.33 7.59 -2.91 -0.02 4.30 16 35 H 0.19 1.99 7.58 -2.91 -0.02 1.97 16 36 H 0.18 2.59 8.06 -2.92 -0.02 2.56 16 Total: -1.00 -62.45 327.53 5.41 -57.04 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.13 Total: 4.66 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 4.93 Total: 14.13 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -4.83 Total: -105.34 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.11 Total: -8.37 kcal Atomic # 9 Polarization: -11.43 SS G_CDS: 2.26 Total: -9.17 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -62.45 5.41 -57.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126097877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.766 kcal (2) G-P(sol) polarization free energy of solvation -62.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds