Wall clock time and date at job start Tue Mar 31 2020 10:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47516 * 2 1 4 4 C 1.50698 * 109.47059 * 119.99871 * 2 1 3 5 5 H 1.08005 * 120.00348 * 119.99540 * 4 2 1 6 6 C 1.37880 * 120.00047 * 300.00044 * 4 2 1 7 7 N 1.31520 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00231 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47025 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47184 * 300.00000 * 8 6 4 11 11 H 1.48501 * 109.46856 * 59.99993 * 8 6 4 12 12 N 1.46905 * 109.47106 * 239.99593 * 2 1 3 13 13 C 1.46902 * 110.99854 * 306.04772 * 12 2 1 14 14 C 1.46896 * 110.99767 * 70.00670 * 12 2 1 15 15 C 1.50703 * 109.47016 * 170.00169 * 14 12 2 16 16 O 1.21293 * 119.99899 * 359.97438 * 15 14 12 17 17 N 1.34774 * 120.00145 * 179.97438 * 15 14 12 18 18 C 1.40024 * 120.00226 * 174.72455 * 17 15 14 19 19 C 1.38869 * 120.04244 * 146.81655 * 18 17 15 20 20 C 1.38110 * 119.98160 * 179.97438 * 19 18 17 21 21 C 1.38457 * 120.05653 * 359.97438 * 20 19 18 22 22 F 1.35103 * 119.96208 * 180.02562 * 21 20 19 23 23 C 1.38566 * 120.08023 * 0.02562 * 21 20 19 24 24 Cl 1.73601 * 119.99033 * 179.97438 * 23 21 20 25 25 C 1.38240 * 120.01960 * 359.70211 * 23 21 20 26 26 H 1.09001 * 109.47253 * 300.00839 * 1 2 3 27 27 H 1.09004 * 109.46731 * 60.00190 * 1 2 3 28 28 H 1.08993 * 109.47516 * 180.02562 * 1 2 3 29 29 H 0.96999 * 119.99478 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46694 * 60.00350 * 13 12 2 31 31 H 1.09003 * 109.46789 * 179.97438 * 13 12 2 32 32 H 1.08993 * 109.47225 * 299.99997 * 13 12 2 33 33 H 1.09001 * 109.47280 * 289.99354 * 14 12 2 34 34 H 1.08991 * 109.47421 * 49.99828 * 14 12 2 35 35 H 0.96999 * 119.99618 * 354.72448 * 17 15 14 36 36 H 1.08002 * 120.00925 * 0.02562 * 19 18 17 37 37 H 1.08006 * 119.97324 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.02730 * 180.30077 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0078 11 1 3.8062 -1.1208 4.0082 12 7 2.0197 -0.6926 -1.1994 13 6 1.4342 -2.0356 -1.3077 14 6 1.7530 0.0971 -2.4090 15 6 2.4775 -0.5165 -3.5794 16 8 3.1502 -1.5133 -3.4212 17 7 2.3780 0.0424 -4.8017 18 6 3.1370 -0.4606 -5.8655 19 6 2.6264 -0.4361 -7.1566 20 6 3.3764 -0.9320 -8.2050 21 6 4.6373 -1.4533 -7.9699 22 9 5.3696 -1.9374 -8.9969 23 6 5.1493 -1.4789 -6.6825 24 17 6.7303 -2.1336 -6.3903 25 6 4.4037 -0.9783 -5.6316 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 0.7088 1.1615 3.4843 30 1 0.3490 -1.9549 -1.3693 31 1 1.8133 -2.5259 -2.2044 32 1 1.7058 -2.6221 -0.4301 33 1 0.6815 0.1052 -2.6088 34 1 2.1026 1.1187 -2.2604 35 1 1.7805 0.7930 -4.9446 36 1 1.6434 -0.0286 -7.3411 37 1 2.9789 -0.9133 -9.2091 38 1 4.8046 -0.9938 -4.6289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129556883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:14 Heat of formation + Delta-G solvation = -41.487055 kcal Electronic energy + Delta-G solvation = -23320.977760 eV Core-core repulsion = 19525.562918 eV Total energy + Delta-G solvation = -3795.414842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.13056 -40.67124 -38.76279 -36.94018 -36.58861 -34.66128 -32.75813 -31.27415 -30.11680 -28.84351 -27.28478 -25.27479 -24.32378 -23.66627 -22.58809 -20.64237 -19.36738 -18.25425 -17.68817 -17.32755 -16.49236 -16.04663 -15.91523 -15.35911 -15.16531 -14.87079 -14.25656 -14.17274 -14.04523 -13.72535 -13.43378 -13.26863 -13.10602 -12.77546 -12.56468 -12.05402 -11.71688 -11.63790 -11.19524 -11.10762 -11.02134 -10.86625 -10.73593 -10.58049 -10.32932 -10.15039 -10.03518 -9.54690 -9.18923 -8.94575 -8.41425 -8.31312 -7.25008 -6.04701 -4.07707 0.63082 0.79668 1.78500 2.59033 2.85143 3.24382 3.32958 3.36517 3.40862 3.85889 4.32480 4.39761 4.64745 4.71494 4.95537 4.99183 5.05622 5.27945 5.35817 5.61810 5.63989 5.69363 5.73678 5.89195 6.03388 6.26381 6.34806 6.55230 6.61260 6.73687 6.91605 7.00494 7.17725 7.36943 7.63814 7.79462 8.01657 8.17872 8.29752 8.50769 8.98304 9.57455 11.02653 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.024524 B = 0.002783 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.480853 B =10058.731468 C =10900.884918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.212 3.788 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.276 1.276 12 N -0.517 5.517 13 C 0.029 3.971 14 C 0.038 3.962 15 C 0.513 3.487 16 O -0.492 6.492 17 N -0.682 5.682 18 C 0.164 3.836 19 C -0.120 4.120 20 C -0.121 4.121 21 C 0.083 3.917 22 F -0.130 7.130 23 C -0.051 4.051 24 Cl -0.046 7.046 25 C -0.089 4.089 26 H 0.090 0.910 27 H 0.005 0.995 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.014 0.986 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.414 0.586 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 0.420 -21.490 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.106 3.894 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.241 5.241 13 C -0.119 4.119 14 C -0.094 4.094 15 C 0.301 3.699 16 O -0.363 6.363 17 N -0.329 5.329 18 C 0.068 3.932 19 C -0.141 4.141 20 C -0.140 4.140 21 C 0.062 3.938 22 F -0.109 7.109 23 C -0.079 4.079 24 Cl -0.017 7.017 25 C -0.110 4.110 26 H 0.109 0.891 27 H 0.024 0.976 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.250 0.750 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.864 -0.311 -21.055 21.252 hybrid contribution -0.716 -0.043 0.549 0.903 sum 2.149 -0.354 -20.506 20.621 Atomic orbital electron populations 1.22439 1.00714 0.99662 1.00525 1.19374 0.89803 0.94470 0.85732 0.94229 1.21053 1.30598 1.12605 0.89418 0.91817 1.24913 0.95194 0.95137 0.99011 1.69866 1.37102 1.23066 1.23591 0.86549 0.79314 0.79608 0.81893 1.21416 1.20320 1.20164 1.62140 1.59155 1.02371 1.00432 1.22378 0.95688 0.91393 1.02417 1.21937 0.97818 0.99222 0.90380 1.21445 0.81519 0.83837 0.83081 1.90696 1.38650 1.23618 1.83354 1.43812 1.44713 1.36065 1.08307 1.17617 0.90165 0.97579 0.87805 1.20859 1.00437 1.02103 0.90680 1.20860 0.92363 1.00039 1.00762 1.17345 0.91478 1.01925 0.83070 1.91525 1.76590 1.85770 1.57002 1.20796 0.90028 1.04018 0.93054 1.98397 1.22816 1.84217 1.96254 1.21051 0.91966 0.98249 0.99780 0.89123 0.97576 0.94720 0.92926 0.96729 0.92231 0.90828 0.92383 0.87999 0.74993 0.83996 0.83503 0.82381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.22 37.16 0.31 -3.64 16 2 C 0.21 5.08 2.31 -68.86 -0.16 4.92 16 3 H 0.04 1.02 7.93 -51.93 -0.41 0.61 16 4 C -0.50 -13.42 7.97 -34.44 -0.27 -13.69 16 5 H 0.06 1.75 7.10 -52.48 -0.37 1.38 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -24.83 11.32 55.43 0.63 -24.21 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.52 -10.78 4.44 -237.74 -1.06 -11.83 16 13 C 0.03 0.59 8.46 60.07 0.51 1.10 16 14 C 0.04 0.60 5.02 -4.98 -0.02 0.58 16 15 C 0.51 7.51 7.26 -10.98 -0.08 7.43 16 16 O -0.49 -8.99 12.03 5.55 0.07 -8.93 16 17 N -0.68 -7.07 5.34 -9.85 -0.05 -7.12 16 18 C 0.16 1.77 6.28 -83.67 -0.53 1.25 16 19 C -0.12 -0.97 9.96 -39.39 -0.39 -1.36 16 20 C -0.12 -1.00 10.02 -39.55 -0.40 -1.40 16 21 C 0.08 0.90 7.27 -39.38 -0.29 0.61 16 22 F -0.13 -1.48 16.83 2.25 0.04 -1.44 16 23 C -0.05 -0.62 6.32 -39.46 -0.25 -0.87 16 24 Cl -0.05 -0.57 28.61 -51.86 -1.48 -2.05 16 25 C -0.09 -1.14 8.44 -39.37 -0.33 -1.47 16 26 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 27 H 0.01 0.11 6.91 -51.93 -0.36 -0.25 16 28 H 0.03 0.77 6.33 -51.93 -0.33 0.45 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.01 0.28 6.21 -51.93 -0.32 -0.05 16 31 H 0.06 1.15 5.82 -51.93 -0.30 0.85 16 32 H 0.07 1.60 6.86 -51.93 -0.36 1.24 16 33 H 0.06 0.83 7.06 -51.93 -0.37 0.46 16 34 H 0.10 1.48 7.93 -51.93 -0.41 1.07 16 35 H 0.41 2.76 8.82 -40.82 -0.36 2.40 16 36 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.16 2.34 6.43 -52.49 -0.34 2.00 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -30.46 330.16 -8.13 -38.59 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.22 Total: 0.87 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.00 Total: -5.06 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.48 Total: -43.16 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.93 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.46 -8.13 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129556883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.893 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds