Wall clock time and date at job start Tue Mar 31 2020 10:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47516 * 2 1 4 4 C 1.50698 * 109.47059 * 119.99871 * 2 1 3 5 5 H 1.08005 * 120.00348 * 119.99540 * 4 2 1 6 6 C 1.37880 * 120.00047 * 300.00044 * 4 2 1 7 7 N 1.31520 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00231 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47025 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47184 * 300.00000 * 8 6 4 11 11 H 1.48501 * 109.46856 * 59.99993 * 8 6 4 12 12 N 1.46905 * 109.47106 * 239.99593 * 2 1 3 13 13 C 1.46902 * 110.99854 * 306.04772 * 12 2 1 14 14 C 1.46896 * 110.99767 * 70.00670 * 12 2 1 15 15 C 1.50703 * 109.47016 * 170.00169 * 14 12 2 16 16 O 1.21293 * 119.99899 * 359.97438 * 15 14 12 17 17 N 1.34774 * 120.00145 * 179.97438 * 15 14 12 18 18 C 1.40024 * 120.00226 * 174.72455 * 17 15 14 19 19 C 1.38869 * 120.04244 * 146.81655 * 18 17 15 20 20 C 1.38110 * 119.98160 * 179.97438 * 19 18 17 21 21 C 1.38457 * 120.05653 * 359.97438 * 20 19 18 22 22 F 1.35103 * 119.96208 * 180.02562 * 21 20 19 23 23 C 1.38566 * 120.08023 * 0.02562 * 21 20 19 24 24 Cl 1.73601 * 119.99033 * 179.97438 * 23 21 20 25 25 C 1.38240 * 120.01960 * 359.70211 * 23 21 20 26 26 H 1.09001 * 109.47253 * 300.00839 * 1 2 3 27 27 H 1.09004 * 109.46731 * 60.00190 * 1 2 3 28 28 H 1.08993 * 109.47516 * 180.02562 * 1 2 3 29 29 H 0.96999 * 119.99478 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46694 * 60.00350 * 13 12 2 31 31 H 1.09003 * 109.46789 * 179.97438 * 13 12 2 32 32 H 1.08993 * 109.47225 * 299.99997 * 13 12 2 33 33 H 1.09001 * 109.47280 * 289.99354 * 14 12 2 34 34 H 1.08991 * 109.47421 * 49.99828 * 14 12 2 35 35 H 0.96999 * 119.99618 * 354.72448 * 17 15 14 36 36 H 1.08002 * 120.00925 * 0.02562 * 19 18 17 37 37 H 1.08006 * 119.97324 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.02730 * 180.30077 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0078 11 1 3.8062 -1.1208 4.0082 12 7 2.0197 -0.6926 -1.1994 13 6 1.4342 -2.0356 -1.3077 14 6 1.7530 0.0971 -2.4090 15 6 2.4775 -0.5165 -3.5794 16 8 3.1502 -1.5133 -3.4212 17 7 2.3780 0.0424 -4.8017 18 6 3.1370 -0.4606 -5.8655 19 6 2.6264 -0.4361 -7.1566 20 6 3.3764 -0.9320 -8.2050 21 6 4.6373 -1.4533 -7.9699 22 9 5.3696 -1.9374 -8.9969 23 6 5.1493 -1.4789 -6.6825 24 17 6.7303 -2.1336 -6.3903 25 6 4.4037 -0.9783 -5.6316 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 0.7088 1.1615 3.4843 30 1 0.3490 -1.9549 -1.3693 31 1 1.8133 -2.5259 -2.2044 32 1 1.7058 -2.6221 -0.4301 33 1 0.6815 0.1052 -2.6088 34 1 2.1026 1.1187 -2.2604 35 1 1.7805 0.7930 -4.9446 36 1 1.6434 -0.0286 -7.3411 37 1 2.9789 -0.9133 -9.2091 38 1 4.8046 -0.9938 -4.6289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129556883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:13 Heat of formation + Delta-G solvation = -61.188102 kcal Electronic energy + Delta-G solvation = -23321.832062 eV Core-core repulsion = 19525.562918 eV Total energy + Delta-G solvation = -3796.269144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.97407 -41.68587 -39.81307 -38.36216 -37.63838 -35.67154 -34.69993 -32.07179 -31.39528 -30.30711 -28.64287 -27.24895 -25.84758 -24.52694 -23.57183 -21.83347 -20.96777 -19.14265 -18.64259 -18.44623 -18.02890 -17.37786 -16.86065 -16.71366 -16.36767 -16.12843 -15.86705 -15.44579 -15.10532 -14.75389 -14.51831 -14.33851 -14.27548 -14.14551 -14.04751 -13.43363 -12.98434 -12.89197 -12.76408 -12.58576 -12.54264 -12.50173 -12.22987 -12.10699 -12.03101 -11.88720 -11.28843 -11.01938 -10.71097 -10.47000 -10.03165 -9.17841 -8.84378 -8.10551 -6.19528 -0.18762 0.00054 0.90411 1.43340 1.44236 1.51380 1.51873 1.87877 2.42637 2.44719 3.05376 3.19098 3.42933 3.59027 3.74374 3.96988 4.08424 4.30704 4.36738 4.45053 4.59422 4.61256 4.72434 4.84458 4.86655 4.93845 4.97869 5.06049 5.13555 5.20766 5.29832 5.53101 5.72229 5.72255 5.82438 6.18700 6.35887 6.46638 6.72440 6.92003 7.14666 7.49235 8.94958 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.024524 B = 0.002783 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.480853 B =10058.731468 C =10900.884918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.218 3.782 3 H 0.018 0.982 4 C -0.518 4.518 5 H 0.048 0.952 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.277 1.277 12 N -0.538 5.538 13 C 0.042 3.958 14 C 0.037 3.963 15 C 0.519 3.481 16 O -0.535 6.535 17 N -0.659 5.659 18 C 0.151 3.849 19 C -0.096 4.096 20 C -0.107 4.107 21 C 0.074 3.926 22 F -0.135 7.135 23 C -0.068 4.068 24 Cl -0.061 7.061 25 C -0.109 4.109 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.434 0.566 36 H 0.186 0.814 37 H 0.184 0.816 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 1.105 -23.708 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.111 3.889 3 H 0.036 0.964 4 C -0.556 4.556 5 H 0.066 0.934 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.778 3.222 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.203 1.203 12 N -0.262 5.262 13 C -0.106 4.106 14 C -0.094 4.094 15 C 0.307 3.693 16 O -0.410 6.410 17 N -0.307 5.307 18 C 0.055 3.945 19 C -0.116 4.116 20 C -0.126 4.126 21 C 0.053 3.947 22 F -0.114 7.114 23 C -0.096 4.096 24 Cl -0.032 7.032 25 C -0.130 4.130 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.275 0.725 36 H 0.203 0.797 37 H 0.201 0.799 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.197 0.409 -23.319 23.353 hybrid contribution -0.196 -0.223 1.117 1.156 sum 1.001 0.186 -22.202 22.225 Atomic orbital electron populations 1.22225 0.99630 0.99421 1.00716 1.19107 0.90457 0.93026 0.86280 0.96417 1.21333 1.30609 1.12426 0.91246 0.93419 1.25557 0.95430 0.95816 1.01391 1.69966 1.37707 1.23870 1.24075 0.85703 0.78606 0.78756 0.79095 1.20683 1.19986 1.20266 1.61906 1.59850 1.02957 1.01522 1.22220 0.96105 0.90918 1.01406 1.21999 0.99552 0.99031 0.88809 1.21144 0.80812 0.83304 0.84020 1.90697 1.40497 1.25637 1.84160 1.43422 1.44352 1.36065 1.06884 1.17776 0.89587 0.98191 0.88910 1.21266 1.01649 0.99931 0.88758 1.21306 0.90775 0.97932 1.02566 1.17624 0.92482 1.02306 0.82304 1.91513 1.76972 1.85935 1.56987 1.20897 0.89745 1.05096 0.93849 1.98382 1.23876 1.84525 1.96394 1.20884 0.93444 1.00051 0.98671 0.91876 0.94314 0.95028 0.92892 0.95751 0.91530 0.93485 0.89914 0.86771 0.72515 0.79718 0.79854 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.15 8.22 71.98 0.59 -6.56 16 2 C 0.22 10.49 2.31 44.17 0.10 10.59 16 3 H 0.02 0.93 7.93 -2.39 -0.02 0.91 16 4 C -0.52 -28.42 7.97 25.60 0.20 -28.21 16 5 H 0.05 2.71 7.10 -2.91 -0.02 2.69 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -51.10 11.32 21.45 0.24 -50.86 16 8 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 N -0.54 -22.36 4.44 -906.06 -4.02 -26.38 16 13 C 0.04 1.67 8.46 127.69 1.08 2.75 16 14 C 0.04 1.11 5.02 85.56 0.43 1.54 16 15 C 0.52 14.50 7.26 87.66 0.64 15.14 16 16 O -0.54 -19.66 12.03 -3.07 -0.04 -19.70 16 17 N -0.66 -11.87 5.34 -303.46 -1.62 -13.49 16 18 C 0.15 2.89 6.28 38.12 0.24 3.13 16 19 C -0.10 -1.10 9.96 22.39 0.22 -0.88 16 20 C -0.11 -1.33 10.02 22.29 0.22 -1.11 16 21 C 0.07 1.46 7.27 22.40 0.16 1.62 16 22 F -0.14 -2.88 16.83 44.97 0.76 -2.12 16 23 C -0.07 -1.64 6.32 22.35 0.14 -1.50 16 24 Cl -0.06 -1.55 28.61 -2.72 -0.08 -1.63 16 25 C -0.11 -2.78 8.44 22.41 0.19 -2.59 16 26 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 27 H 0.04 1.42 6.91 -2.38 -0.02 1.41 16 28 H 0.03 1.38 6.33 -2.39 -0.02 1.37 16 29 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.02 0.91 6.21 -2.39 -0.01 0.89 16 31 H 0.07 2.57 5.82 -2.39 -0.01 2.56 16 32 H 0.05 2.09 6.86 -2.39 -0.02 2.07 16 33 H 0.08 2.08 7.06 -2.39 -0.02 2.07 16 34 H 0.11 3.10 7.93 -2.39 -0.02 3.09 16 35 H 0.43 4.05 8.82 -92.71 -0.82 3.23 16 36 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 37 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 38 H 0.13 4.04 6.43 -2.91 -0.02 4.03 16 Total: -1.00 -68.58 330.16 2.24 -66.35 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.30 Total: 6.62 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.67 Total: -4.70 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -5.40 Total: -90.73 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.04 Total: -19.70 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.76 Total: -2.12 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -68.58 2.24 -66.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129556883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.157 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds