Wall clock time and date at job start Tue Mar 31 2020 10:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.50704 * 109.46984 * 240.00548 * 2 1 3 5 5 H 1.07994 * 119.99891 * 239.99559 * 4 2 1 6 6 C 1.37884 * 120.00053 * 59.99596 * 4 2 1 7 7 N 1.31511 * 119.99624 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99998 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47212 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47298 * 119.99817 * 8 6 4 11 11 H 1.48497 * 109.47395 * 240.00159 * 8 6 4 12 12 N 1.46896 * 109.47463 * 120.00260 * 2 1 3 13 13 C 1.46897 * 111.00051 * 58.95611 * 12 2 1 14 14 C 1.46900 * 111.00225 * 295.00072 * 12 2 1 15 15 C 1.50694 * 109.47260 * 189.99953 * 14 12 2 16 16 O 1.21298 * 120.00126 * 0.02562 * 15 14 12 17 17 N 1.34780 * 119.99967 * 180.02562 * 15 14 12 18 18 C 1.40085 * 119.99671 * 175.52101 * 17 15 14 19 19 C 1.38826 * 120.05361 * 34.68398 * 18 17 15 20 20 C 1.38116 * 119.97081 * 179.74185 * 19 18 17 21 21 C 1.38496 * 120.06497 * 0.55576 * 20 19 18 22 22 F 1.35097 * 119.95188 * 179.71936 * 21 20 19 23 23 C 1.38453 * 120.09356 * 359.69692 * 21 20 19 24 24 C 1.38226 * 120.03549 * 0.02562 * 23 21 20 25 25 Cl 1.73605 * 120.03223 * 179.97438 * 24 23 21 26 26 H 1.08999 * 109.46926 * 299.99494 * 1 2 3 27 27 H 1.08997 * 109.47131 * 60.00064 * 1 2 3 28 28 H 1.09002 * 109.46551 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99370 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47593 * 59.99705 * 13 12 2 31 31 H 1.09002 * 109.47604 * 179.97438 * 13 12 2 32 32 H 1.09002 * 109.47133 * 300.00224 * 13 12 2 33 33 H 1.09004 * 109.46842 * 310.00158 * 14 12 2 34 34 H 1.09002 * 109.46860 * 69.99692 * 14 12 2 35 35 H 0.96992 * 120.00056 * 355.52049 * 17 15 14 36 36 H 1.08007 * 120.01456 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.96729 * 180.24673 * 20 19 18 38 38 H 1.08002 * 119.98171 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 3.1464 -2.2867 -3.6041 10 1 1.1659 -1.5864 -4.8162 11 1 3.1464 -0.1871 -4.8167 12 7 2.0198 -0.6925 1.1993 13 6 1.5285 -2.0761 1.2458 14 6 1.6488 0.0390 2.4180 15 6 2.3681 -0.5573 3.6004 16 8 3.1165 -1.4988 3.4433 17 7 2.1797 -0.0445 4.8325 18 6 2.7738 -0.6561 5.9440 19 6 4.0234 -1.2491 5.8260 20 6 4.6099 -1.8470 6.9243 21 6 3.9475 -1.8655 8.1405 22 9 4.5208 -2.4559 9.2118 23 6 2.6989 -1.2794 8.2599 24 6 2.1107 -0.6750 7.1648 25 17 0.5447 0.0593 7.3144 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 0.7094 1.1620 -3.4843 30 1 1.8763 -2.6151 0.3645 31 1 1.9062 -2.5659 2.1433 32 1 0.4386 -2.0743 1.2638 33 1 1.9298 1.0869 2.3125 34 1 0.5723 -0.0347 2.5726 35 1 1.6329 0.7480 4.9496 36 1 4.5385 -1.2398 4.8767 37 1 5.5838 -2.3048 6.8334 38 1 2.1841 -1.2946 9.2092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129587804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:22 Heat of formation + Delta-G solvation = -42.727756 kcal Electronic energy + Delta-G solvation = -23417.239244 eV Core-core repulsion = 19621.770601 eV Total energy + Delta-G solvation = -3795.468643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.16220 -40.68892 -38.78296 -36.89063 -36.68868 -34.74096 -32.75049 -31.29418 -30.10740 -28.81668 -27.31091 -25.22185 -24.29233 -23.66500 -22.62187 -20.62222 -19.37208 -18.29983 -17.70625 -17.30932 -16.48317 -16.07211 -15.87138 -15.38962 -15.13410 -14.80879 -14.35341 -14.23914 -14.01885 -13.89304 -13.58199 -13.27270 -13.09603 -12.76361 -12.53245 -11.86489 -11.65281 -11.61492 -11.42528 -11.12798 -11.02181 -10.85622 -10.78369 -10.55802 -10.37876 -10.12892 -10.01916 -9.51236 -9.25573 -8.91137 -8.42876 -8.31783 -7.24047 -6.05228 -4.08219 0.62391 0.78218 1.65430 2.61033 2.82479 3.22083 3.29133 3.37240 3.42811 3.97535 4.34614 4.39348 4.57750 4.76418 4.85611 5.01644 5.11105 5.27788 5.33104 5.60137 5.63789 5.72261 5.79064 5.91384 6.11907 6.29122 6.38359 6.55076 6.62626 6.75034 6.93938 7.01484 7.17579 7.39388 7.65260 7.78775 8.01138 8.17384 8.30326 8.51184 8.98173 9.57014 11.02238 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.025871 B = 0.002863 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.023457 B = 9777.847922 C =10598.333044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.498 4.498 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.517 5.517 13 C 0.030 3.970 14 C 0.038 3.962 15 C 0.517 3.483 16 O -0.495 6.495 17 N -0.680 5.680 18 C 0.161 3.839 19 C -0.083 4.083 20 C -0.126 4.126 21 C 0.088 3.912 22 F -0.136 7.136 23 C -0.128 4.128 24 C -0.045 4.045 25 Cl -0.053 7.053 26 H 0.007 0.993 27 H 0.090 0.910 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.014 0.986 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.413 0.587 36 H 0.163 0.837 37 H 0.145 0.855 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.257 -0.559 21.386 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.537 4.537 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.241 5.241 13 C -0.119 4.119 14 C -0.094 4.094 15 C 0.306 3.694 16 O -0.366 6.366 17 N -0.327 5.327 18 C 0.064 3.936 19 C -0.104 4.104 20 C -0.146 4.146 21 C 0.068 3.932 22 F -0.114 7.114 23 C -0.148 4.148 24 C -0.074 4.074 25 Cl -0.024 7.024 26 H 0.026 0.974 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.119 0.881 34 H 0.079 0.921 35 H 0.250 0.750 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.085 -1.098 21.023 21.155 hybrid contribution -1.091 0.051 -0.469 1.189 sum 0.994 -1.047 20.553 20.604 Atomic orbital electron populations 1.22441 1.00755 0.99602 1.00609 1.19387 0.89790 0.94597 0.85703 0.94120 1.21141 1.30529 1.12571 0.89434 0.91672 1.24919 0.95199 0.95135 0.99041 1.69886 1.37155 1.23077 1.23377 0.86443 0.78536 0.79720 0.82755 1.19660 1.21184 1.21046 1.62146 1.59531 1.02142 1.00244 1.22374 0.96440 0.90588 1.02465 1.21930 0.97531 0.99806 0.90141 1.21410 0.81770 0.83091 0.83138 1.90650 1.35017 1.26909 1.84070 1.43822 1.52268 1.31305 1.05292 1.17567 0.92089 0.97871 0.86031 1.21287 0.92351 0.96729 1.00014 1.21221 1.01448 1.01054 0.90857 1.17413 0.92684 0.98844 0.84297 1.91514 1.84208 1.81708 1.54008 1.20736 0.94885 0.99994 0.99210 1.20437 0.88963 1.03577 0.94452 1.98385 1.24866 1.81185 1.97969 0.97450 0.89117 0.94853 0.93035 0.90698 0.92283 0.96800 0.88083 0.92131 0.75008 0.81941 0.83701 0.83487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.28 37.16 0.31 -3.69 16 2 C 0.21 5.08 2.34 -68.86 -0.16 4.92 16 3 H 0.04 1.06 8.03 -51.93 -0.42 0.64 16 4 C -0.50 -13.37 7.94 -34.44 -0.27 -13.65 16 5 H 0.07 1.79 6.75 -52.49 -0.35 1.43 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -24.82 11.32 55.43 0.63 -24.20 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.52 -10.83 4.48 -237.73 -1.06 -11.89 16 13 C 0.03 0.60 8.53 60.06 0.51 1.11 16 14 C 0.04 0.61 4.89 -4.98 -0.02 0.59 16 15 C 0.52 7.78 7.37 -10.99 -0.08 7.70 16 16 O -0.49 -8.87 11.75 5.54 0.07 -8.80 16 17 N -0.68 -7.90 5.05 -9.82 -0.05 -7.95 16 18 C 0.16 1.86 6.31 -83.61 -0.53 1.34 16 19 C -0.08 -0.98 8.70 -39.41 -0.34 -1.32 16 20 C -0.13 -1.26 10.02 -39.53 -0.40 -1.66 16 21 C 0.09 0.88 7.30 -39.41 -0.29 0.59 16 22 F -0.14 -1.40 17.26 2.25 0.04 -1.36 16 23 C -0.13 -1.21 9.80 -39.51 -0.39 -1.59 16 24 C -0.04 -0.46 6.34 -39.33 -0.25 -0.71 16 25 Cl -0.05 -0.49 27.96 -51.86 -1.45 -1.94 16 26 H 0.01 0.13 6.75 -51.93 -0.35 -0.22 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 28 H 0.03 0.75 6.39 -51.93 -0.33 0.42 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.07 1.63 6.53 -51.93 -0.34 1.29 16 31 H 0.06 1.15 5.83 -51.93 -0.30 0.84 16 32 H 0.01 0.27 6.28 -51.93 -0.33 -0.06 16 33 H 0.10 1.50 8.00 -51.93 -0.42 1.09 16 34 H 0.06 0.93 6.94 -51.93 -0.36 0.57 16 35 H 0.41 3.81 8.08 -40.82 -0.33 3.48 16 36 H 0.16 2.13 6.20 -52.48 -0.33 1.80 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -29.19 328.06 -8.06 -37.25 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.15 Total: 2.73 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -2.00 Total: -4.89 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.49 Total: -44.04 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.45 Total: -1.94 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.19 -8.06 -37.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129587804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.479 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds