Wall clock time and date at job start Tue Mar 31 2020 10:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.50704 * 109.46984 * 240.00548 * 2 1 3 5 5 H 1.07994 * 119.99891 * 239.99559 * 4 2 1 6 6 C 1.37884 * 120.00053 * 59.99596 * 4 2 1 7 7 N 1.31511 * 119.99624 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99998 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47212 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47298 * 119.99817 * 8 6 4 11 11 H 1.48497 * 109.47395 * 240.00159 * 8 6 4 12 12 N 1.46896 * 109.47463 * 120.00260 * 2 1 3 13 13 C 1.46897 * 111.00051 * 58.95611 * 12 2 1 14 14 C 1.46900 * 111.00225 * 295.00072 * 12 2 1 15 15 C 1.50694 * 109.47260 * 189.99953 * 14 12 2 16 16 O 1.21298 * 120.00126 * 0.02562 * 15 14 12 17 17 N 1.34780 * 119.99967 * 180.02562 * 15 14 12 18 18 C 1.40085 * 119.99671 * 175.52101 * 17 15 14 19 19 C 1.38826 * 120.05361 * 34.68398 * 18 17 15 20 20 C 1.38116 * 119.97081 * 179.74185 * 19 18 17 21 21 C 1.38496 * 120.06497 * 0.55576 * 20 19 18 22 22 F 1.35097 * 119.95188 * 179.71936 * 21 20 19 23 23 C 1.38453 * 120.09356 * 359.69692 * 21 20 19 24 24 C 1.38226 * 120.03549 * 0.02562 * 23 21 20 25 25 Cl 1.73605 * 120.03223 * 179.97438 * 24 23 21 26 26 H 1.08999 * 109.46926 * 299.99494 * 1 2 3 27 27 H 1.08997 * 109.47131 * 60.00064 * 1 2 3 28 28 H 1.09002 * 109.46551 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99370 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47593 * 59.99705 * 13 12 2 31 31 H 1.09002 * 109.47604 * 179.97438 * 13 12 2 32 32 H 1.09002 * 109.47133 * 300.00224 * 13 12 2 33 33 H 1.09004 * 109.46842 * 310.00158 * 14 12 2 34 34 H 1.09002 * 109.46860 * 69.99692 * 14 12 2 35 35 H 0.96992 * 120.00056 * 355.52049 * 17 15 14 36 36 H 1.08007 * 120.01456 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.96729 * 180.24673 * 20 19 18 38 38 H 1.08002 * 119.98171 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 3.1464 -2.2867 -3.6041 10 1 1.1659 -1.5864 -4.8162 11 1 3.1464 -0.1871 -4.8167 12 7 2.0198 -0.6925 1.1993 13 6 1.5285 -2.0761 1.2458 14 6 1.6488 0.0390 2.4180 15 6 2.3681 -0.5573 3.6004 16 8 3.1165 -1.4988 3.4433 17 7 2.1797 -0.0445 4.8325 18 6 2.7738 -0.6561 5.9440 19 6 4.0234 -1.2491 5.8260 20 6 4.6099 -1.8470 6.9243 21 6 3.9475 -1.8655 8.1405 22 9 4.5208 -2.4559 9.2118 23 6 2.6989 -1.2794 8.2599 24 6 2.1107 -0.6750 7.1648 25 17 0.5447 0.0593 7.3144 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 0.7094 1.1620 -3.4843 30 1 1.8763 -2.6151 0.3645 31 1 1.9062 -2.5659 2.1433 32 1 0.4386 -2.0743 1.2638 33 1 1.9298 1.0869 2.3125 34 1 0.5723 -0.0347 2.5726 35 1 1.6329 0.7480 4.9496 36 1 4.5385 -1.2398 4.8767 37 1 5.5838 -2.3048 6.8334 38 1 2.1841 -1.2946 9.2092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129587804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:21 Heat of formation + Delta-G solvation = -60.420554 kcal Electronic energy + Delta-G solvation = -23418.006461 eV Core-core repulsion = 19621.770601 eV Total energy + Delta-G solvation = -3796.235860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.96368 -41.74096 -39.85752 -38.35552 -37.56613 -35.80328 -34.69378 -32.10589 -31.39942 -30.33360 -28.69675 -27.19895 -25.83348 -24.55100 -23.62337 -21.86078 -20.97936 -19.21243 -18.64436 -18.47937 -18.04630 -17.39586 -16.87094 -16.64527 -16.39193 -15.99492 -15.85190 -15.61318 -15.10187 -14.90109 -14.62507 -14.47885 -14.36264 -14.13957 -14.00988 -13.41436 -12.92726 -12.81204 -12.67404 -12.62958 -12.53137 -12.42433 -12.22457 -12.16698 -12.01545 -11.88489 -11.41416 -10.97349 -10.70486 -10.47968 -10.07745 -9.21392 -8.86929 -8.10612 -6.19616 -0.21067 -0.03389 0.86653 1.41667 1.44638 1.47690 1.55761 1.79680 2.36685 2.44840 3.17139 3.19490 3.40861 3.55005 3.67021 3.87826 4.05804 4.21073 4.33523 4.42571 4.51452 4.60350 4.72536 4.81613 4.85168 4.92780 4.95804 5.05748 5.13691 5.20508 5.30299 5.54232 5.67842 5.72227 5.81495 6.14234 6.25392 6.45261 6.69704 6.92377 7.06415 7.49234 8.95595 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.025871 B = 0.002863 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.023457 B = 9777.847922 C =10598.333044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.217 3.783 3 H 0.018 0.982 4 C -0.516 4.516 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.534 5.534 13 C 0.041 3.959 14 C 0.036 3.964 15 C 0.525 3.475 16 O -0.528 6.528 17 N -0.663 5.663 18 C 0.145 3.855 19 C -0.095 4.095 20 C -0.123 4.123 21 C 0.087 3.913 22 F -0.136 7.136 23 C -0.121 4.121 24 C -0.043 4.043 25 Cl -0.042 7.042 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.019 0.981 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.425 0.575 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 -0.613 23.017 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.110 3.890 3 H 0.036 0.964 4 C -0.554 4.554 5 H 0.070 0.930 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.257 5.257 13 C -0.107 4.107 14 C -0.095 4.095 15 C 0.313 3.687 16 O -0.403 6.403 17 N -0.311 5.311 18 C 0.049 3.951 19 C -0.116 4.116 20 C -0.142 4.142 21 C 0.067 3.933 22 F -0.115 7.115 23 C -0.141 4.141 24 C -0.072 4.072 25 Cl -0.013 7.013 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.264 0.736 36 H 0.163 0.837 37 H 0.179 0.821 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.677 -1.131 22.699 22.789 hybrid contribution -0.955 0.085 -0.843 1.277 sum 0.722 -1.045 21.856 21.893 Atomic orbital electron populations 1.22235 0.99819 0.99343 1.00694 1.19128 0.90341 0.93198 0.86335 0.96402 1.21397 1.30524 1.12413 0.91072 0.93025 1.25586 0.95434 0.95814 1.01512 1.69987 1.37817 1.23960 1.23946 0.85559 0.78080 0.78653 0.79646 1.19715 1.20627 1.20659 1.61938 1.60198 1.02528 1.01080 1.22230 0.96583 0.90203 1.01693 1.21989 0.98742 1.00038 0.88742 1.21049 0.81232 0.82615 0.83764 1.90648 1.36474 1.28464 1.84677 1.43494 1.51863 1.31367 1.04379 1.17657 0.92425 0.98725 0.86299 1.21178 0.92780 0.97746 0.99879 1.21353 1.02060 1.00411 0.90426 1.17476 0.92904 0.98735 0.84170 1.91519 1.84260 1.81714 1.53959 1.20966 0.94554 0.98792 0.99804 1.20427 0.89362 1.03435 0.93999 1.98393 1.24019 1.80959 1.97912 0.94456 0.91826 0.95137 0.92939 0.93021 0.91424 0.96237 0.86714 0.90397 0.73554 0.83654 0.82107 0.81330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.31 8.28 71.98 0.60 -6.71 16 2 C 0.22 10.48 2.34 44.17 0.10 10.59 16 3 H 0.02 0.95 8.03 -2.39 -0.02 0.93 16 4 C -0.52 -28.08 7.94 25.60 0.20 -27.87 16 5 H 0.05 2.89 6.75 -2.91 -0.02 2.87 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -51.20 11.32 21.45 0.24 -50.96 16 8 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 N -0.53 -22.26 4.48 -906.05 -4.06 -26.32 16 13 C 0.04 1.66 8.53 127.69 1.09 2.75 16 14 C 0.04 1.13 4.89 85.56 0.42 1.54 16 15 C 0.52 15.26 7.37 87.65 0.65 15.91 16 16 O -0.53 -18.81 11.75 -3.08 -0.04 -18.85 16 17 N -0.66 -14.42 5.05 -303.36 -1.53 -15.95 16 18 C 0.15 3.15 6.31 38.13 0.24 3.39 16 19 C -0.10 -2.16 8.70 22.38 0.19 -1.97 16 20 C -0.12 -2.30 10.02 22.30 0.22 -2.08 16 21 C 0.09 1.57 7.30 22.38 0.16 1.73 16 22 F -0.14 -2.50 17.26 44.97 0.78 -1.73 16 23 C -0.12 -1.98 9.80 22.32 0.22 -1.76 16 24 C -0.04 -0.78 6.34 22.43 0.14 -0.64 16 25 Cl -0.04 -0.67 27.96 -2.72 -0.08 -0.75 16 26 H 0.04 1.41 6.75 -2.39 -0.02 1.40 16 27 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 28 H 0.03 1.35 6.39 -2.39 -0.02 1.34 16 29 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 30 H 0.05 2.29 6.53 -2.39 -0.02 2.27 16 31 H 0.07 2.61 5.83 -2.39 -0.01 2.60 16 32 H 0.02 0.75 6.28 -2.39 -0.01 0.73 16 33 H 0.11 3.25 8.00 -2.38 -0.02 3.23 16 34 H 0.08 2.19 6.94 -2.39 -0.02 2.17 16 35 H 0.43 6.97 8.08 -92.71 -0.75 6.22 16 36 H 0.15 3.85 6.20 -2.91 -0.02 3.83 16 37 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -62.23 328.06 2.40 -59.83 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.37 Total: 12.93 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 4.69 Total: -3.83 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -5.35 Total: -93.23 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.04 Total: -18.85 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -62.23 2.40 -59.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129587804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.593 kcal (2) G-P(sol) polarization free energy of solvation -62.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds