Wall clock time and date at job start Tue Mar 31 2020 10:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 O 1.42906 * 109.47129 * 119.99962 * 2 1 3 5 5 C 1.42898 * 114.00145 * 149.99772 * 4 2 1 6 6 C 1.52996 * 109.47085 * 179.97438 * 5 4 2 7 7 S 1.81398 * 109.47148 * 180.02562 * 6 5 4 8 8 O 1.42101 * 110.53896 * 68.38147 * 7 6 5 9 9 O 1.42094 * 110.54607 * 291.63047 * 7 6 5 10 10 O 1.52203 * 104.45294 * 180.02562 * 7 6 5 11 11 C 1.35675 * 113.99436 * 75.00148 * 10 7 6 12 12 C 1.39318 * 119.81652 * 269.72394 * 11 10 7 13 13 C 1.36442 * 120.18307 * 179.76291 * 12 11 10 14 14 C 1.40835 * 119.80911 * 0.51582 * 13 12 11 15 15 C 1.41214 * 120.17843 * 179.71730 * 14 13 12 16 16 H 1.08003 * 120.00174 * 204.56675 * 15 14 13 17 17 C 1.39900 * 119.99877 * 24.57006 * 15 14 13 18 18 N 1.30880 * 119.99674 * 17.92004 * 17 15 14 19 19 Si 1.86796 * 119.99905 * 197.92306 * 17 15 14 20 20 H 1.48500 * 109.47080 * 59.99753 * 19 17 15 21 21 H 1.48500 * 109.47310 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47433 * 299.99853 * 19 17 15 23 23 C 1.40835 * 119.64367 * 359.74335 * 14 13 12 24 24 C 1.36435 * 119.81068 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.47333 * 300.00157 * 1 2 3 26 26 H 1.09003 * 109.46924 * 60.00396 * 1 2 3 27 27 H 1.08996 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47333 * 239.99843 * 2 1 3 29 29 H 1.09000 * 109.47110 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47207 * 300.00242 * 3 2 1 31 31 H 1.09007 * 109.46932 * 60.00107 * 3 2 1 32 32 H 1.09007 * 109.46928 * 60.00606 * 5 4 2 33 33 H 1.08994 * 109.47528 * 300.00438 * 5 4 2 34 34 H 1.09010 * 109.46968 * 60.00519 * 6 5 4 35 35 H 1.08994 * 109.47562 * 300.00744 * 6 5 4 36 36 H 1.07997 * 119.91044 * 0.02749 * 12 11 10 37 37 H 1.07995 * 120.09167 * 180.25683 * 13 12 11 38 38 H 0.96998 * 119.99381 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.09414 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.90678 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2659 -1.3245 0.9887 6 6 3.6760 -2.0081 2.2946 7 16 5.2753 -2.8337 2.0687 8 8 6.3111 -1.8760 1.8980 9 8 5.1458 -3.9383 1.1843 10 8 5.5694 -3.4684 3.4205 11 6 4.8360 -4.5801 3.6793 12 6 3.6066 -4.4642 4.3244 13 6 2.8606 -5.5767 4.5841 14 6 3.3417 -6.8457 4.2078 15 6 2.5788 -8.0029 4.4781 16 1 3.0664 -8.9623 4.5688 17 6 1.1912 -7.9066 4.6284 18 7 0.5567 -6.8513 4.1850 19 14 0.2442 -9.2841 5.4621 20 1 0.7441 -9.4594 6.8494 21 1 -1.2003 -8.9415 5.4965 22 1 0.4361 -10.5463 4.7037 23 6 4.5879 -6.9546 3.5610 24 6 5.3188 -5.8316 3.3035 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 4.0200 -0.5874 0.7126 33 1 3.1809 -2.0707 0.1987 34 1 2.9220 -2.7452 2.5712 35 1 3.7611 -1.2617 3.0843 36 1 3.2411 -3.4907 4.6159 37 1 1.9059 -5.4848 5.0805 38 1 -0.4054 -6.7847 4.2889 39 1 4.9640 -7.9241 3.2696 40 1 6.2749 -5.9133 2.8079 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175064339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:38 Heat of formation + Delta-G solvation = -164.677716 kcal Electronic energy + Delta-G solvation = -24224.050243 eV Core-core repulsion = 20516.504713 eV Total energy + Delta-G solvation = -3707.545530 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51065 -39.53722 -38.74534 -38.21861 -37.15295 -35.51097 -34.53166 -32.11045 -31.54625 -31.27736 -28.14852 -27.26242 -24.88867 -23.66272 -23.02246 -22.35364 -21.14929 -19.52357 -19.28976 -18.60564 -18.21252 -17.65469 -17.24201 -17.05122 -16.19139 -16.00299 -15.87666 -15.79829 -14.93306 -14.70678 -14.23474 -14.15606 -14.07215 -13.86199 -13.67934 -13.65102 -13.33010 -13.26937 -13.19083 -13.05791 -12.98877 -12.81199 -12.67651 -12.63093 -12.36389 -12.29584 -11.95229 -11.81307 -11.63795 -11.35971 -11.09311 -10.68278 -9.71472 -9.44958 -8.82775 -6.49849 -0.87678 0.60840 1.00847 1.32687 1.42850 1.53199 1.56491 2.17001 2.37921 2.54397 2.86196 3.11101 3.46726 3.49895 3.67673 3.97319 4.04584 4.08230 4.19378 4.24365 4.27114 4.28493 4.48781 4.58501 4.72876 4.82960 4.87170 4.90391 4.91399 4.96632 5.07670 5.17901 5.24590 5.30179 5.47086 5.77340 5.80512 5.91426 6.11748 6.13572 6.45790 6.71313 6.78498 8.12583 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.004122 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.183725 B = 6790.810013 C = 8578.665628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 C -0.174 4.174 4 O -0.391 6.391 5 C 0.073 3.927 6 C -0.644 4.644 7 S 2.592 3.408 8 O -0.974 6.974 9 O -0.982 6.982 10 O -0.642 6.642 11 C -0.114 4.114 12 C -0.093 4.093 13 C -0.175 4.175 14 C 0.094 3.906 15 C -0.458 4.458 16 H 0.094 0.906 17 C 0.037 3.963 18 N -0.796 5.796 19 Si 0.989 3.011 20 H -0.257 1.257 21 H -0.266 1.266 22 H -0.257 1.257 23 C -0.231 4.231 24 C -0.055 4.055 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.299 0.701 39 H 0.119 0.881 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 9.359 -4.336 10.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.003 3.997 3 C -0.232 4.232 4 O -0.311 6.311 5 C -0.005 4.005 6 C -0.771 4.771 7 S 2.691 3.309 8 O -0.972 6.972 9 O -0.981 6.981 10 O -0.602 6.602 11 C -0.158 4.158 12 C -0.114 4.114 13 C -0.195 4.195 14 C 0.090 3.910 15 C -0.485 4.485 16 H 0.112 0.888 17 C -0.183 4.183 18 N -0.419 5.419 19 Si 0.809 3.191 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.251 4.251 24 C -0.076 4.076 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.160 0.840 35 H 0.177 0.823 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.881 9.434 -4.434 10.815 hybrid contribution -0.642 -0.104 0.169 0.672 sum -3.524 9.330 -4.265 10.847 Atomic orbital electron populations 1.21891 0.92486 1.02665 1.03522 1.22502 0.96147 0.93342 0.87697 1.22314 1.01577 0.95687 1.03580 1.87971 1.35638 1.70244 1.37262 1.22108 0.88140 0.96492 0.93772 1.30849 1.23716 1.14367 1.08144 1.05920 0.76378 0.74352 0.74238 1.93517 1.54110 1.64705 1.84891 1.93562 1.87240 1.50401 1.66887 1.85559 1.68393 1.47273 1.58973 1.17656 0.95670 0.81732 1.20761 1.20782 0.92308 0.99929 0.98351 1.20986 1.00948 0.91848 1.05672 1.18169 0.91598 0.94036 0.87187 1.20131 0.92697 0.95791 1.39899 0.88799 1.26934 0.98828 0.99671 0.92870 1.69840 1.12032 1.29246 1.30773 0.85117 0.76849 0.77675 0.79464 1.18124 1.19030 1.18146 1.20844 0.98465 0.97380 1.08377 1.20619 0.98785 0.91584 0.96593 0.92088 0.88714 0.92806 0.91046 0.92556 0.89327 0.92026 0.90393 0.91375 0.84046 0.82306 0.84957 0.85769 0.88988 0.86277 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.56 71.98 0.69 -1.99 16 2 C 0.06 1.26 3.34 30.59 0.10 1.36 16 3 C -0.17 -2.94 9.53 71.98 0.69 -2.26 16 4 O -0.39 -10.88 9.99 -148.98 -1.49 -12.37 16 5 C 0.07 2.00 5.75 71.98 0.41 2.42 16 6 C -0.64 -19.40 5.83 71.98 0.42 -18.98 16 7 S 2.59 95.54 5.17 -56.49 -0.29 95.25 16 8 O -0.97 -38.41 18.09 -118.57 -2.15 -40.56 16 9 O -0.98 -42.13 16.25 -118.57 -1.93 -44.05 16 10 O -0.64 -25.99 10.04 -59.02 -0.59 -26.59 16 11 C -0.11 -5.05 4.82 22.79 0.11 -4.94 16 12 C -0.09 -4.03 8.38 22.11 0.19 -3.85 16 13 C -0.17 -8.30 8.64 22.49 0.19 -8.10 16 14 C 0.09 4.64 5.57 -21.28 -0.12 4.52 16 15 C -0.46 -21.76 9.04 23.40 0.21 -21.55 16 16 H 0.09 4.19 7.91 -2.91 -0.02 4.17 16 17 C 0.04 1.60 5.13 85.24 0.44 2.04 16 18 N -0.80 -36.47 10.96 21.82 0.24 -36.23 16 19 Si 0.99 33.02 29.60 68.60 2.03 35.05 16 20 H -0.26 -8.43 7.11 99.48 0.71 -7.72 16 21 H -0.27 -8.43 7.11 99.48 0.71 -7.72 16 22 H -0.26 -8.38 7.11 99.48 0.71 -7.68 16 23 C -0.23 -10.81 9.74 22.48 0.22 -10.59 16 24 C -0.06 -2.53 8.97 22.11 0.20 -2.33 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.34 7.79 -2.39 -0.02 1.32 16 29 H 0.06 0.97 7.87 -2.39 -0.02 0.95 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.08 1.83 7.87 -2.38 -0.02 1.81 16 33 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 34 H 0.14 4.55 6.61 -2.38 -0.02 4.53 16 35 H 0.16 4.03 8.14 -2.39 -0.02 4.01 16 36 H 0.13 4.78 7.51 -2.91 -0.02 4.76 16 37 H 0.12 5.94 6.16 -2.91 -0.02 5.92 16 38 H 0.30 12.22 8.30 -92.71 -0.77 11.45 16 39 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 40 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -61.38 348.78 0.61 -60.77 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 1.03 Total: 32.98 kcal Atomic # 6 Polarization: -67.99 SS G_CDS: 3.75 Total: -64.24 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.24 Total: -36.23 kcal Atomic # 8 Polarization: -117.42 SS G_CDS: -6.15 Total: -123.57 kcal Atomic # 14 Polarization: 33.02 SS G_CDS: 2.03 Total: 35.05 kcal Atomic # 16 Polarization: 95.54 SS G_CDS: -0.29 Total: 95.25 kcal Total: -61.38 0.61 -60.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175064339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.905 kcal (2) G-P(sol) polarization free energy of solvation -61.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds