Wall clock time and date at job start Tue Mar 31 2020 10:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47055 * 2 1 4 4 C 1.46500 * 120.00123 * 270.00331 * 3 2 1 5 5 C 1.50702 * 109.46904 * 269.99929 * 4 3 2 6 6 H 1.07993 * 120.00490 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99735 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00009 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99850 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46883 * 90.00692 * 9 7 5 11 11 H 1.48506 * 109.46975 * 210.00197 * 9 7 5 12 12 H 1.48494 * 109.47208 * 330.00066 * 9 7 5 13 13 C 1.34779 * 119.99707 * 90.00663 * 3 2 1 14 14 O 1.21282 * 119.99922 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00037 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47140 * 180.02562 * 15 13 3 17 17 C 1.39919 * 110.99849 * 179.97438 * 16 15 13 18 18 C 1.39060 * 120.08582 * 299.72319 * 17 16 15 19 19 F 1.35097 * 120.04969 * 0.02562 * 18 17 16 20 20 C 1.38275 * 119.90299 * 179.72396 * 18 17 16 21 21 C 1.38319 * 120.06568 * 0.52912 * 20 18 17 22 22 C 1.38230 * 120.16752 * 359.77140 * 21 20 18 23 23 C 1.38281 * 120.10098 * 359.95052 * 22 21 20 24 24 Cl 1.73601 * 120.03850 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.47495 * 59.99636 * 1 2 3 26 26 H 1.08998 * 109.46821 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46447 * 299.99424 * 1 2 3 28 28 H 1.09002 * 109.47160 * 240.00485 * 2 1 3 29 29 H 1.09001 * 109.47495 * 120.00364 * 2 1 3 30 30 H 1.08991 * 109.47410 * 30.00046 * 4 3 2 31 31 H 1.09007 * 109.47039 * 150.00320 * 4 3 2 32 32 H 0.97004 * 120.00211 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47247 * 60.00371 * 15 13 3 34 34 H 1.09001 * 109.47358 * 299.99798 * 15 13 3 35 35 H 1.00902 * 110.99923 * 303.95945 * 16 15 13 36 36 H 1.07996 * 119.96761 * 180.27453 * 20 18 17 37 37 H 1.08002 * 119.91649 * 179.74308 * 21 20 18 38 38 H 1.08005 * 119.95486 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 5.3911 2.1836 -3.2575 9 14 3.0128 3.4361 -3.9286 10 1 3.1155 4.8562 -3.5068 11 1 3.4064 3.3139 -5.3554 12 1 1.6133 2.9694 -3.7595 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 7 2.3093 2.2063 3.5890 17 6 2.0860 1.5776 4.8189 18 6 0.8149 1.1187 5.1465 19 9 -0.2070 1.2785 4.2774 20 6 0.5997 0.4929 6.3607 21 6 1.6446 0.3332 7.2528 22 6 2.9079 0.7939 6.9326 23 6 3.1321 1.4156 5.7179 24 17 4.7195 1.9930 5.3172 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6879 -2.0283 31 1 2.0955 3.1412 -1.1383 32 1 5.7172 2.5741 -4.0834 33 1 2.6213 0.4185 2.5302 34 1 0.9433 1.0124 2.5300 35 1 3.2576 2.5445 3.5221 36 1 -0.3861 0.1320 6.6143 37 1 1.4729 -0.1523 8.2021 38 1 3.7212 0.6678 7.6320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183190293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:16 Heat of formation + Delta-G solvation = -50.760853 kcal Electronic energy + Delta-G solvation = -23870.813662 eV Core-core repulsion = 20074.996677 eV Total energy + Delta-G solvation = -3795.816984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -49.08516 -39.95396 -39.06155 -36.73797 -35.95843 -35.24761 -32.73685 -30.79708 -30.48503 -30.05068 -28.08572 -25.99292 -23.33853 -23.01097 -22.55562 -21.77031 -18.69515 -18.07290 -17.45610 -16.98107 -16.86589 -16.16191 -15.85811 -15.56206 -15.19904 -15.07215 -14.59188 -14.39726 -13.99967 -13.83121 -13.51017 -13.30248 -13.18059 -12.63329 -12.48276 -12.26058 -12.17700 -11.84616 -11.74504 -11.62580 -11.41670 -11.19986 -10.97385 -10.78924 -10.50745 -10.28654 -10.15524 -9.55393 -9.05605 -9.03337 -8.59583 -8.16677 -7.76610 -6.09633 -4.08589 0.66201 0.77970 1.76899 3.05203 3.25066 3.29150 3.34825 3.37353 3.46081 3.87717 4.10620 4.39248 4.44998 4.47527 4.82011 4.86052 4.97745 5.14069 5.24121 5.26348 5.36022 5.46376 5.51124 5.54418 5.68345 5.70833 5.88527 5.95428 6.12767 6.21466 6.38872 6.60981 6.73852 6.94386 7.00193 7.30876 7.59792 8.18572 8.45185 8.88044 8.94529 9.50572 11.03671 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.003764 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.766767 B = 7436.365918 C = 8417.844595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.590 5.590 4 C 0.217 3.783 5 C -0.530 4.530 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.525 6.525 15 C 0.034 3.966 16 N -0.611 5.611 17 C 0.102 3.898 18 C 0.087 3.913 19 F -0.125 7.125 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.092 4.092 23 C -0.070 4.070 24 Cl -0.047 7.047 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.375 0.625 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.676 -7.896 20.819 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.323 5.323 4 C 0.097 3.903 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.401 6.401 15 C -0.096 4.096 16 N -0.238 5.238 17 C -0.001 4.001 18 C 0.065 3.935 19 F -0.104 7.104 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.111 4.111 23 C -0.100 4.100 24 Cl -0.018 7.018 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.129 0.871 35 H 0.202 0.798 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.785 -6.813 20.426 23.652 hybrid contribution 0.239 0.133 -0.821 0.865 sum -9.546 -6.680 19.605 22.806 Atomic orbital electron populations 1.22243 0.96557 1.01704 1.02430 1.21481 0.93601 0.83747 1.03139 1.47899 1.64128 1.13408 1.06818 1.19667 0.97354 0.93445 0.79855 1.21319 0.95313 1.32970 1.07216 0.90797 1.24850 0.95000 0.95769 0.97336 1.69894 1.15148 1.44950 1.23566 0.86849 0.81468 0.81648 0.79731 1.19868 1.21063 1.19044 1.19947 0.78893 0.87032 0.84668 1.90696 1.45027 1.17607 1.86802 1.22194 1.04148 0.94021 0.89206 1.57140 1.33751 1.34237 0.98700 1.18677 0.91781 0.96366 0.93289 1.17076 0.83015 1.03816 0.89614 1.91494 1.56901 1.93806 1.68165 1.21155 1.01196 0.99695 0.92257 1.20850 0.91434 1.00945 0.99926 1.20996 0.98278 0.97189 0.94646 1.20964 0.86372 1.04781 0.97909 1.98407 1.22439 1.87464 1.93468 0.92059 0.91865 0.92854 0.89455 0.91621 0.95101 0.94492 0.92547 0.91162 0.87060 0.79775 0.83938 0.84131 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.10 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.15 2.46 -175.06 -0.43 -12.58 16 4 C 0.22 5.33 4.23 -5.19 -0.02 5.31 16 5 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 6 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 9 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.51 10.58 7.71 -10.99 -0.08 10.49 16 14 O -0.53 -13.15 15.78 5.56 0.09 -13.07 16 15 C 0.03 0.53 4.39 -4.97 -0.02 0.51 16 16 N -0.61 -9.69 6.12 -59.42 -0.36 -10.05 16 17 C 0.10 1.32 5.78 -83.62 -0.48 0.84 16 18 C 0.09 1.01 6.99 -39.26 -0.27 0.74 16 19 F -0.13 -1.62 15.11 2.25 0.03 -1.58 16 20 C -0.12 -1.03 10.02 -39.54 -0.40 -1.42 16 21 C -0.11 -0.78 10.04 -39.55 -0.40 -1.18 16 22 C -0.09 -0.77 9.82 -39.57 -0.39 -1.16 16 23 C -0.07 -0.79 6.34 -39.32 -0.25 -1.04 16 24 Cl -0.05 -0.56 27.21 -51.86 -1.41 -1.97 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.67 7.22 -51.93 -0.37 0.30 16 28 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 29 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 30 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 31 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.07 0.99 7.40 -51.93 -0.38 0.61 16 34 H 0.11 1.59 5.12 -51.93 -0.27 1.32 16 35 H 0.38 6.27 6.41 -39.29 -0.25 6.02 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 38 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -34.20 337.23 -7.76 -41.96 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.46 Total: 2.78 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.40 Total: -0.66 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.02 Total: -49.57 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.03 Total: -1.58 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.41 Total: -1.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.20 -7.76 -41.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183190293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.800 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds