Wall clock time and date at job start Tue Mar 31 2020 10:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47055 * 2 1 4 4 C 1.46500 * 120.00123 * 270.00331 * 3 2 1 5 5 C 1.50702 * 109.46904 * 269.99929 * 4 3 2 6 6 H 1.07993 * 120.00490 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99735 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00009 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99850 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46883 * 90.00692 * 9 7 5 11 11 H 1.48506 * 109.46975 * 210.00197 * 9 7 5 12 12 H 1.48494 * 109.47208 * 330.00066 * 9 7 5 13 13 C 1.34779 * 119.99707 * 90.00663 * 3 2 1 14 14 O 1.21282 * 119.99922 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00037 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47140 * 180.02562 * 15 13 3 17 17 C 1.39919 * 110.99849 * 179.97438 * 16 15 13 18 18 C 1.39060 * 120.08582 * 299.72319 * 17 16 15 19 19 F 1.35097 * 120.04969 * 0.02562 * 18 17 16 20 20 C 1.38275 * 119.90299 * 179.72396 * 18 17 16 21 21 C 1.38319 * 120.06568 * 0.52912 * 20 18 17 22 22 C 1.38230 * 120.16752 * 359.77140 * 21 20 18 23 23 C 1.38281 * 120.10098 * 359.95052 * 22 21 20 24 24 Cl 1.73601 * 120.03850 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.47495 * 59.99636 * 1 2 3 26 26 H 1.08998 * 109.46821 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46447 * 299.99424 * 1 2 3 28 28 H 1.09002 * 109.47160 * 240.00485 * 2 1 3 29 29 H 1.09001 * 109.47495 * 120.00364 * 2 1 3 30 30 H 1.08991 * 109.47410 * 30.00046 * 4 3 2 31 31 H 1.09007 * 109.47039 * 150.00320 * 4 3 2 32 32 H 0.97004 * 120.00211 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47247 * 60.00371 * 15 13 3 34 34 H 1.09001 * 109.47358 * 299.99798 * 15 13 3 35 35 H 1.00902 * 110.99923 * 303.95945 * 16 15 13 36 36 H 1.07996 * 119.96761 * 180.27453 * 20 18 17 37 37 H 1.08002 * 119.91649 * 179.74308 * 21 20 18 38 38 H 1.08005 * 119.95486 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 5.3911 2.1836 -3.2575 9 14 3.0128 3.4361 -3.9286 10 1 3.1155 4.8562 -3.5068 11 1 3.4064 3.3139 -5.3554 12 1 1.6133 2.9694 -3.7595 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 7 2.3093 2.2063 3.5890 17 6 2.0860 1.5776 4.8189 18 6 0.8149 1.1187 5.1465 19 9 -0.2070 1.2785 4.2774 20 6 0.5997 0.4929 6.3607 21 6 1.6446 0.3332 7.2528 22 6 2.9079 0.7939 6.9326 23 6 3.1321 1.4156 5.7179 24 17 4.7195 1.9930 5.3172 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6879 -2.0283 31 1 2.0955 3.1412 -1.1383 32 1 5.7172 2.5741 -4.0834 33 1 2.6213 0.4185 2.5302 34 1 0.9433 1.0124 2.5300 35 1 3.2576 2.5445 3.5221 36 1 -0.3861 0.1320 6.6143 37 1 1.4729 -0.1523 8.2021 38 1 3.7212 0.6678 7.6320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183190293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:15 Heat of formation + Delta-G solvation = -73.796359 kcal Electronic energy + Delta-G solvation = -23871.812556 eV Core-core repulsion = 20074.996677 eV Total energy + Delta-G solvation = -3796.815879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.96442 -41.15513 -40.27157 -37.58891 -37.26433 -36.63336 -34.87608 -32.07082 -31.51407 -31.09784 -29.67809 -27.38655 -24.50353 -24.17210 -23.93016 -22.87495 -20.18146 -19.14200 -18.97085 -18.50158 -18.03672 -17.41010 -17.07842 -16.69423 -16.53313 -16.14655 -15.89238 -15.48603 -15.32464 -14.97545 -14.76059 -14.63914 -14.38166 -14.24416 -13.85103 -13.61735 -13.39432 -13.16706 -13.01802 -12.62926 -12.55733 -12.45265 -12.39751 -12.08492 -12.06787 -11.96991 -11.76623 -11.30698 -10.85323 -10.66356 -9.79721 -9.49749 -9.10746 -8.36309 -6.41516 -0.06795 0.01885 0.94233 1.30740 1.35216 1.43294 1.64541 2.02885 2.28989 2.39655 2.77666 2.98030 3.22490 3.45298 3.72268 3.84782 3.93040 4.04621 4.16406 4.23237 4.27480 4.36795 4.57631 4.69188 4.75826 4.81625 4.87492 4.94855 4.97364 5.11302 5.23950 5.34309 5.42437 5.44522 5.59071 5.70584 5.94379 6.20607 6.58421 6.60261 7.16950 7.31242 8.80541 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.003764 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.766767 B = 7436.365918 C = 8417.844595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.596 5.596 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.029 0.971 7 C 0.013 3.987 8 N -0.944 5.944 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.273 1.273 12 H -0.238 1.238 13 C 0.499 3.501 14 O -0.580 6.580 15 C 0.052 3.948 16 N -0.631 5.631 17 C 0.072 3.928 18 C 0.069 3.931 19 F -0.138 7.138 20 C -0.113 4.113 21 C -0.091 4.091 22 C -0.088 4.088 23 C -0.081 4.081 24 Cl -0.065 7.065 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.017 0.983 32 H 0.269 0.731 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.364 0.636 36 H 0.173 0.827 37 H 0.184 0.816 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.382 -9.591 22.883 27.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.328 5.328 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.048 0.952 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.198 1.198 12 H -0.161 1.161 13 C 0.287 3.713 14 O -0.459 6.459 15 C -0.077 4.077 16 N -0.258 5.258 17 C -0.030 4.030 18 C 0.047 3.953 19 F -0.116 7.116 20 C -0.132 4.132 21 C -0.110 4.110 22 C -0.107 4.107 23 C -0.111 4.111 24 Cl -0.036 7.036 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.148 0.852 35 H 0.189 0.811 36 H 0.190 0.810 37 H 0.202 0.798 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.532 -8.575 22.528 27.167 hybrid contribution 1.141 0.546 -1.281 1.800 sum -11.391 -8.028 21.247 25.409 Atomic orbital electron populations 1.22166 0.93838 1.03851 1.02063 1.21827 0.95768 0.80960 1.04085 1.48015 1.63932 1.15228 1.05593 1.19322 0.95002 0.92981 0.82280 1.21539 0.96977 1.32218 1.06824 0.95230 1.25825 0.96701 0.97104 0.98898 1.70042 1.17369 1.46478 1.24489 0.85736 0.80509 0.78975 0.77872 1.20335 1.19805 1.16128 1.20865 0.77541 0.86667 0.86243 1.90653 1.47395 1.20133 1.87759 1.22053 1.05382 0.93671 0.86631 1.57193 1.33278 1.35448 0.99913 1.18812 0.93112 0.98491 0.92551 1.17423 0.82193 1.04950 0.90769 1.91453 1.57250 1.94085 1.68854 1.21561 1.03017 0.97951 0.90661 1.21383 0.89974 0.98781 1.00834 1.21390 0.99899 0.95779 0.93622 1.21164 0.85315 1.05725 0.98894 1.98400 1.23648 1.87851 1.93734 0.93113 0.88394 0.92522 0.90252 0.89032 0.93051 0.96492 0.92219 0.89651 0.85213 0.81097 0.80977 0.79828 0.81842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 10.24 71.98 0.74 -2.99 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -24.89 2.46 -826.15 -2.03 -26.92 16 4 C 0.23 11.29 4.23 85.63 0.36 11.65 16 5 C -0.54 -32.09 9.94 25.60 0.25 -31.84 16 6 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.77 5.47 84.66 0.46 1.24 16 8 N -0.94 -60.27 13.96 21.45 0.30 -59.97 16 9 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 13 C 0.50 21.37 7.71 87.66 0.68 22.04 16 14 O -0.58 -30.57 15.78 -3.04 -0.05 -30.62 16 15 C 0.05 1.64 4.39 85.56 0.38 2.01 16 16 N -0.63 -20.51 6.12 -341.91 -2.09 -22.60 16 17 C 0.07 1.82 5.78 38.20 0.22 2.04 16 18 C 0.07 1.46 6.99 22.48 0.16 1.62 16 19 F -0.14 -3.35 15.11 44.97 0.68 -2.67 16 20 C -0.11 -1.42 10.02 22.30 0.22 -1.20 16 21 C -0.09 -0.83 10.04 22.29 0.22 -0.61 16 22 C -0.09 -1.19 9.82 22.28 0.22 -0.97 16 23 C -0.08 -1.75 6.34 22.44 0.14 -1.60 16 24 Cl -0.07 -1.60 27.21 -2.72 -0.07 -1.67 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.28 7.22 -2.38 -0.02 1.27 16 28 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 29 H 0.09 2.25 6.44 -2.39 -0.02 2.23 16 30 H 0.05 2.35 7.13 -2.39 -0.02 2.33 16 31 H 0.02 0.92 6.85 -2.38 -0.02 0.90 16 32 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 33 H 0.09 2.38 7.40 -2.39 -0.02 2.36 16 34 H 0.13 3.57 5.12 -2.39 -0.01 3.56 16 35 H 0.36 12.87 6.41 -89.69 -0.58 12.30 16 36 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 37 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -80.19 337.23 3.66 -76.54 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.47 Total: 16.06 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.57 Total: 4.77 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -3.82 Total: -109.49 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.05 Total: -30.62 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.68 Total: -2.67 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.07 Total: -1.67 kcal Total: -80.19 3.66 -76.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183190293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.741 kcal (2) G-P(sol) polarization free energy of solvation -80.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds