Wall clock time and date at job start Tue Mar 31 2020 10:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00277 * 2 1 4 4 C 1.50694 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.38296 * 119.96882 * 270.01896 * 4 3 2 6 6 C 1.38239 * 120.11105 * 180.02562 * 5 4 3 7 7 C 1.38173 * 120.05417 * 359.68222 * 6 5 4 8 8 C 1.38704 * 119.94347 * 0.57075 * 7 6 5 9 9 O 1.35907 * 120.05498 * 179.72125 * 8 7 6 10 10 S 1.52198 * 114.00092 * 269.72660 * 9 8 7 11 11 O 1.42105 * 104.27751 * 318.92762 * 10 9 8 12 12 O 1.42101 * 104.27671 * 191.07197 * 10 9 8 13 13 C 1.81395 * 104.44745 * 75.00105 * 10 9 8 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 9 15 15 C 1.53002 * 109.47213 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.47210 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00074 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00176 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99881 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99769 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47153 * 90.00084 * 20 18 16 22 22 H 1.48497 * 109.46916 * 210.00200 * 20 18 16 23 23 H 1.48506 * 109.47238 * 329.99805 * 20 18 16 24 24 C 1.38122 * 119.97576 * 89.99319 * 4 3 2 25 25 H 1.09004 * 109.47423 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47391 * 300.00742 * 1 2 3 27 27 H 1.09006 * 109.47109 * 60.00784 * 1 2 3 28 28 H 1.08991 * 109.47118 * 59.99275 * 3 2 1 29 29 H 1.09002 * 109.46603 * 299.99977 * 3 2 1 30 30 H 1.07997 * 119.94448 * 0.02562 * 5 4 3 31 31 H 1.07997 * 119.97253 * 179.97438 * 6 5 4 32 32 H 1.08006 * 120.02693 * 180.29371 * 7 6 5 33 33 H 1.09003 * 109.47393 * 299.99560 * 13 10 9 34 34 H 1.08994 * 109.47678 * 60.00177 * 13 10 9 35 35 H 1.09004 * 109.47080 * 299.99725 * 14 13 10 36 36 H 1.09005 * 109.47285 * 59.99790 * 14 13 10 37 37 H 1.09003 * 109.47218 * 299.99466 * 15 14 13 38 38 H 1.08995 * 109.47220 * 59.99596 * 15 14 13 39 39 H 0.97010 * 119.99674 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.02518 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2016 1.1313 1.1971 6 6 5.5797 1.0227 1.2000 7 6 6.2716 0.9623 0.0055 8 6 5.5831 1.0227 -1.1972 9 8 6.2619 0.9693 -2.3734 10 16 6.6807 2.3310 -2.9089 11 8 5.5561 3.1647 -2.6646 12 8 7.1221 2.0661 -4.2334 13 6 8.0763 2.8206 -1.8587 14 6 8.5922 4.1910 -2.3024 15 6 9.7698 4.6038 -1.4170 16 6 10.2783 5.9533 -1.8544 17 1 9.8083 6.4656 -2.6809 18 6 11.3429 6.5345 -1.1987 19 7 11.7863 7.7124 -1.5801 20 14 12.1544 5.6494 0.2322 21 1 13.2557 4.7927 -0.2760 22 1 12.7031 6.6478 1.1847 23 1 11.1493 4.8042 0.9256 24 6 4.1999 1.1320 -1.1974 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.6886 1.8464 0.8898 29 1 1.6886 1.8463 -0.8900 30 1 3.6622 1.1731 2.1318 31 1 6.1156 0.9802 2.1366 32 1 7.3479 0.8727 0.0082 33 1 7.7483 2.8750 -0.8206 34 1 8.8750 2.0846 -1.9493 35 1 8.9201 4.1371 -3.3405 36 1 7.7932 4.9269 -2.2114 37 1 9.4423 4.6576 -0.3787 38 1 10.5685 3.8678 -1.5084 39 1 12.5356 8.1211 -1.1190 40 1 3.6613 1.1751 -2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264846645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:00 Heat of formation + Delta-G solvation = -132.029570 kcal Electronic energy + Delta-G solvation = -23778.110889 eV Core-core repulsion = 20071.981089 eV Total energy + Delta-G solvation = -3706.129800 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.26105 -38.99373 -37.62886 -37.10671 -36.02167 -34.89771 -32.50795 -32.19911 -30.73009 -28.52895 -27.71654 -25.78347 -23.96537 -23.66486 -22.27496 -20.67452 -20.17673 -18.31793 -17.66818 -17.48725 -16.81016 -16.75911 -16.67808 -16.19121 -15.76906 -15.36420 -15.20524 -14.43119 -14.24142 -14.18326 -13.47778 -13.29997 -13.16077 -12.90621 -12.58117 -12.49306 -12.38039 -12.22721 -12.08661 -12.03165 -11.98216 -11.80921 -11.65365 -11.28272 -11.04384 -10.97861 -10.12930 -10.12883 -9.90216 -9.67721 -9.36140 -9.29693 -9.16710 -8.60906 -6.10411 -4.09856 0.01880 0.76337 0.94281 2.11851 2.99652 3.24864 3.32310 3.33821 3.65087 3.68095 4.00205 4.33027 4.38222 4.38454 4.49479 4.68033 4.76178 4.85493 4.87930 4.93082 4.95512 5.01901 5.09485 5.15570 5.23235 5.27440 5.47934 5.66244 5.72824 5.79770 5.91606 6.06864 6.09825 6.20255 6.46762 6.62555 6.68339 7.09011 7.23138 7.68427 8.45283 8.93877 9.50502 11.02823 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.003153 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.738386 B = 8878.978716 C = 9574.477363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.101 3.899 4 C -0.078 4.078 5 C -0.083 4.083 6 C -0.103 4.103 7 C -0.122 4.122 8 C 0.069 3.931 9 O -0.669 6.669 10 S 2.584 3.416 11 O -0.953 6.953 12 O -0.929 6.929 13 C -0.638 4.638 14 C -0.095 4.095 15 C -0.005 4.005 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C -0.070 4.070 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.020 0.980 38 H 0.016 0.984 39 H 0.264 0.736 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.976 -16.942 7.466 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.024 3.976 4 C -0.078 4.078 5 C -0.102 4.102 6 C -0.121 4.121 7 C -0.142 4.142 8 C 0.028 3.972 9 O -0.627 6.627 10 S 2.683 3.317 11 O -0.952 6.952 12 O -0.928 6.928 13 C -0.768 4.768 14 C -0.134 4.134 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.538 5.538 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.090 4.090 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.193 -17.150 6.842 27.362 hybrid contribution 1.039 -0.036 0.992 1.437 sum -19.154 -17.185 7.834 26.899 Atomic orbital electron populations 1.22783 0.80648 1.02988 1.00226 1.87962 1.19887 1.27199 1.95486 1.21367 0.88959 0.85333 1.01893 1.19424 0.94625 1.01271 0.92510 1.21267 0.94323 0.96739 0.97860 1.21057 0.94088 0.99264 0.97670 1.21504 1.01571 1.00036 0.91098 1.17973 0.90658 1.07569 0.81028 1.85751 1.74645 1.59204 1.43126 1.05786 0.76951 0.72884 0.76117 1.93617 1.47819 1.67901 1.85855 1.93622 1.83420 1.82119 1.33606 1.30869 1.19272 1.10621 1.15994 1.21303 1.01101 0.89301 1.01664 1.19539 0.92457 0.97327 0.94996 1.21121 1.15815 1.01596 1.17987 0.90698 1.25026 0.96579 0.94747 0.97073 1.69911 1.26453 1.15942 1.41505 0.86774 0.79951 0.79708 0.82809 1.20209 1.21263 1.19056 1.21167 0.92063 0.96247 0.99528 0.89436 0.93874 0.93788 0.91599 0.91597 0.84691 0.83990 0.83753 0.85159 0.84721 0.90800 0.90772 0.96137 0.96534 0.92606 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.55 10.69 -35.23 -0.38 -3.92 16 3 C 0.10 0.82 6.06 36.00 0.22 1.04 16 4 C -0.08 -0.79 5.51 -104.65 -0.58 -1.36 16 5 C -0.08 -0.71 9.70 -39.56 -0.38 -1.09 16 6 C -0.10 -0.87 10.04 -39.61 -0.40 -1.27 16 7 C -0.12 -1.26 8.47 -39.43 -0.33 -1.59 16 8 C 0.07 0.88 4.79 -39.22 -0.19 0.69 16 9 O -0.67 -9.28 10.05 -51.77 -0.52 -9.80 16 10 S 2.58 39.95 5.17 -107.50 -0.56 39.40 16 11 O -0.95 -16.18 16.26 -67.04 -1.09 -17.27 16 12 O -0.93 -17.24 18.09 -67.04 -1.21 -18.45 16 13 C -0.64 -9.39 5.47 37.16 0.20 -9.18 16 14 C -0.09 -1.83 5.16 -26.73 -0.14 -1.96 16 15 C 0.00 -0.11 4.04 -27.88 -0.11 -0.22 16 16 C -0.53 -14.88 9.66 -34.44 -0.33 -15.21 16 17 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 20 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 24 C -0.07 -0.84 8.70 -39.43 -0.34 -1.19 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.14 1.19 7.52 -52.48 -0.39 0.80 16 33 H 0.13 1.63 6.63 -51.92 -0.34 1.29 16 34 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 38 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -36.03 350.93 -9.47 -45.50 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.74 Total: -2.30 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: -1.37 Total: -28.22 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.75 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -3.20 Total: -49.45 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 39.95 SS G_CDS: -0.56 Total: 39.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.03 -9.47 -45.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264846645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.530 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds