Wall clock time and date at job start Tue Mar 31 2020 10:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00277 * 2 1 4 4 C 1.50694 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.38296 * 119.96882 * 270.01896 * 4 3 2 6 6 C 1.38239 * 120.11105 * 180.02562 * 5 4 3 7 7 C 1.38173 * 120.05417 * 359.68222 * 6 5 4 8 8 C 1.38704 * 119.94347 * 0.57075 * 7 6 5 9 9 O 1.35907 * 120.05498 * 179.72125 * 8 7 6 10 10 S 1.52198 * 114.00092 * 269.72660 * 9 8 7 11 11 O 1.42105 * 104.27751 * 318.92762 * 10 9 8 12 12 O 1.42101 * 104.27671 * 191.07197 * 10 9 8 13 13 C 1.81395 * 104.44745 * 75.00105 * 10 9 8 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 9 15 15 C 1.53002 * 109.47213 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.47210 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00074 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00176 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99881 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99769 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47153 * 90.00084 * 20 18 16 22 22 H 1.48497 * 109.46916 * 210.00200 * 20 18 16 23 23 H 1.48506 * 109.47238 * 329.99805 * 20 18 16 24 24 C 1.38122 * 119.97576 * 89.99319 * 4 3 2 25 25 H 1.09004 * 109.47423 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47391 * 300.00742 * 1 2 3 27 27 H 1.09006 * 109.47109 * 60.00784 * 1 2 3 28 28 H 1.08991 * 109.47118 * 59.99275 * 3 2 1 29 29 H 1.09002 * 109.46603 * 299.99977 * 3 2 1 30 30 H 1.07997 * 119.94448 * 0.02562 * 5 4 3 31 31 H 1.07997 * 119.97253 * 179.97438 * 6 5 4 32 32 H 1.08006 * 120.02693 * 180.29371 * 7 6 5 33 33 H 1.09003 * 109.47393 * 299.99560 * 13 10 9 34 34 H 1.08994 * 109.47678 * 60.00177 * 13 10 9 35 35 H 1.09004 * 109.47080 * 299.99725 * 14 13 10 36 36 H 1.09005 * 109.47285 * 59.99790 * 14 13 10 37 37 H 1.09003 * 109.47218 * 299.99466 * 15 14 13 38 38 H 1.08995 * 109.47220 * 59.99596 * 15 14 13 39 39 H 0.97010 * 119.99674 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.02518 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2016 1.1313 1.1971 6 6 5.5797 1.0227 1.2000 7 6 6.2716 0.9623 0.0055 8 6 5.5831 1.0227 -1.1972 9 8 6.2619 0.9693 -2.3734 10 16 6.6807 2.3310 -2.9089 11 8 5.5561 3.1647 -2.6646 12 8 7.1221 2.0661 -4.2334 13 6 8.0763 2.8206 -1.8587 14 6 8.5922 4.1910 -2.3024 15 6 9.7698 4.6038 -1.4170 16 6 10.2783 5.9533 -1.8544 17 1 9.8083 6.4656 -2.6809 18 6 11.3429 6.5345 -1.1987 19 7 11.7863 7.7124 -1.5801 20 14 12.1544 5.6494 0.2322 21 1 13.2557 4.7927 -0.2760 22 1 12.7031 6.6478 1.1847 23 1 11.1493 4.8042 0.9256 24 6 4.1999 1.1320 -1.1974 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.6886 1.8464 0.8898 29 1 1.6886 1.8463 -0.8900 30 1 3.6622 1.1731 2.1318 31 1 6.1156 0.9802 2.1366 32 1 7.3479 0.8727 0.0082 33 1 7.7483 2.8750 -0.8206 34 1 8.8750 2.0846 -1.9493 35 1 8.9201 4.1371 -3.3405 36 1 7.7932 4.9269 -2.2114 37 1 9.4423 4.6576 -0.3787 38 1 10.5685 3.8678 -1.5084 39 1 12.5356 8.1211 -1.1190 40 1 3.6613 1.1751 -2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264846645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:00 Heat of formation + Delta-G solvation = -157.651607 kcal Electronic energy + Delta-G solvation = -23779.221944 eV Core-core repulsion = 20071.981089 eV Total energy + Delta-G solvation = -3707.240855 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.18235 -39.73208 -38.43299 -38.25027 -37.31737 -36.56355 -34.29351 -33.11119 -31.49545 -30.26070 -28.29208 -26.37515 -25.53844 -24.66306 -23.12273 -22.19488 -21.29239 -19.44047 -19.02587 -18.73587 -18.27630 -17.52806 -17.31831 -17.06760 -16.75066 -16.31378 -16.13580 -16.02749 -15.69703 -14.89904 -14.85413 -14.38370 -14.27713 -14.13653 -13.75500 -13.66645 -13.43576 -13.40302 -13.28347 -13.26257 -13.13907 -12.72532 -12.69473 -12.59236 -12.35414 -11.97523 -11.84765 -11.64874 -11.41354 -11.28129 -10.76687 -10.67629 -10.08534 -9.96603 -8.28827 -6.35030 -1.10516 -0.00588 0.15385 1.04708 1.38412 1.40924 1.52478 2.32098 2.37644 2.48671 2.87508 3.06010 3.06444 3.51177 3.66124 3.68919 3.73329 3.87830 4.05775 4.14347 4.21653 4.30006 4.36509 4.47252 4.55705 4.57967 4.59772 4.74332 4.82864 4.88743 4.92663 4.97299 5.05837 5.23743 5.32252 5.38341 5.45686 5.62771 5.76517 6.16204 6.25740 6.73202 7.29549 8.88095 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.003153 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.738386 B = 8878.978716 C = 9574.477363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.098 3.902 4 C -0.090 4.090 5 C -0.077 4.077 6 C -0.098 4.098 7 C -0.128 4.128 8 C 0.031 3.969 9 O -0.664 6.664 10 S 2.599 3.401 11 O -0.976 6.976 12 O -0.970 6.970 13 C -0.627 4.627 14 C -0.100 4.100 15 C -0.005 4.005 16 C -0.544 4.544 17 H 0.029 0.971 18 C -0.001 4.001 19 N -0.953 5.953 20 Si 0.956 3.044 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.233 1.233 24 C -0.095 4.095 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.167 0.833 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.267 0.733 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.162 -19.125 11.125 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.023 3.977 4 C -0.090 4.090 5 C -0.095 4.095 6 C -0.116 4.116 7 C -0.148 4.148 8 C -0.010 4.010 9 O -0.624 6.624 10 S 2.699 3.301 11 O -0.975 6.975 12 O -0.969 6.969 13 C -0.757 4.757 14 C -0.139 4.139 15 C -0.043 4.043 16 C -0.582 4.582 17 H 0.047 0.953 18 C -0.197 4.197 19 N -0.593 5.593 20 Si 0.778 3.222 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.156 1.156 24 C -0.116 4.116 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.185 0.815 31 H 0.196 0.804 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.412 -19.345 10.470 30.008 hybrid contribution 0.966 0.660 -0.136 1.178 sum -19.446 -18.685 10.334 28.880 Atomic orbital electron populations 1.22963 0.79123 1.03926 1.01188 1.87916 1.21648 1.27785 1.95688 1.21453 0.88042 0.85291 1.02960 1.19741 0.95715 1.01054 0.92480 1.21728 0.94782 0.94633 0.98378 1.21550 0.94217 0.97463 0.98356 1.21887 1.02901 0.99373 0.90595 1.18418 0.91105 1.10273 0.81194 1.85719 1.74825 1.57570 1.44236 1.05244 0.76674 0.72721 0.75455 1.93575 1.48998 1.68909 1.85979 1.93565 1.83974 1.82966 1.36350 1.30721 1.19473 1.08290 1.17172 1.21174 0.99955 0.92031 1.00784 1.19516 0.94017 0.94555 0.96251 1.21542 1.15845 1.03968 1.16827 0.95258 1.26136 0.97356 0.95561 1.00676 1.70090 1.27461 1.18202 1.43576 0.85585 0.79425 0.78680 0.78525 1.19174 1.21237 1.15617 1.21340 0.92436 0.97575 1.00243 0.88597 0.92306 0.93422 0.89203 0.91872 0.81545 0.80407 0.81508 0.82184 0.81793 0.91769 0.91403 0.94468 0.94942 0.92463 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -7.03 10.69 -148.98 -1.59 -8.62 16 3 C 0.10 1.47 6.06 71.23 0.43 1.91 16 4 C -0.09 -1.66 5.51 -19.88 -0.11 -1.77 16 5 C -0.08 -1.03 9.70 22.28 0.22 -0.81 16 6 C -0.10 -1.24 10.04 22.25 0.22 -1.02 16 7 C -0.13 -2.21 8.47 22.37 0.19 -2.02 16 8 C 0.03 0.76 4.79 22.50 0.11 0.86 16 9 O -0.66 -18.10 10.05 -61.60 -0.62 -18.72 16 10 S 2.60 79.80 5.17 -56.49 -0.29 79.51 16 11 O -0.98 -33.64 16.26 -118.57 -1.93 -35.56 16 12 O -0.97 -36.76 18.09 -118.57 -2.15 -38.91 16 13 C -0.63 -16.85 5.47 71.98 0.39 -16.46 16 14 C -0.10 -3.79 5.16 30.59 0.16 -3.63 16 15 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 16 C -0.54 -31.15 9.66 25.60 0.25 -30.90 16 17 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 18 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 19 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 20 Si 0.96 42.34 27.47 68.60 1.88 44.22 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.23 -9.06 6.54 99.48 0.65 -8.41 16 24 C -0.10 -2.29 8.70 22.37 0.19 -2.09 16 25 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.09 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 30 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.17 2.00 7.52 -2.91 -0.02 1.98 16 33 H 0.16 3.35 6.63 -2.39 -0.02 3.34 16 34 H 0.16 3.48 8.14 -2.39 -0.02 3.46 16 35 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 37 H 0.04 1.52 7.20 -2.39 -0.02 1.51 16 38 H 0.03 1.33 7.57 -2.39 -0.02 1.32 16 39 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 40 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -81.38 350.93 0.46 -80.91 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.97 Total: 10.79 kcal Atomic # 6 Polarization: -58.01 SS G_CDS: 3.88 Total: -54.13 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.30 Total: -59.50 kcal Atomic # 8 Polarization: -95.52 SS G_CDS: -6.28 Total: -101.81 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal Atomic # 16 Polarization: 79.80 SS G_CDS: -0.29 Total: 79.51 kcal Total: -81.38 0.46 -80.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264846645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.740 kcal (2) G-P(sol) polarization free energy of solvation -81.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds