Wall clock time and date at job start Tue Mar 31 2020 10:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99899 * 2 1 4 4 C 1.50703 * 109.47064 * 270.00279 * 3 2 1 5 5 C 1.38459 * 120.01976 * 89.99990 * 4 3 2 6 6 F 1.35096 * 120.01818 * 359.97438 * 5 4 3 7 7 C 1.38443 * 119.96169 * 179.97438 * 5 4 3 8 8 C 1.38231 * 120.00353 * 359.97438 * 7 5 4 9 9 C 1.38206 * 120.03621 * 359.97438 * 8 7 5 10 10 C 1.38291 * 120.01607 * 269.72116 * 4 3 2 11 11 Cl 1.73602 * 120.00435 * 0.02562 * 10 4 3 12 12 C 1.34773 * 120.00646 * 180.02562 * 2 1 3 13 13 O 1.21585 * 120.00914 * 179.97438 * 12 2 1 14 14 N 1.34781 * 119.99568 * 359.97438 * 12 2 1 15 15 C 1.46500 * 120.00006 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47327 * 179.97438 * 15 14 12 17 17 C 1.50693 * 109.47316 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00422 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00084 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99759 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00029 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47592 * 89.99549 * 21 19 17 23 23 H 1.48505 * 109.46817 * 209.99469 * 21 19 17 24 24 H 1.48504 * 109.47006 * 329.98950 * 21 19 17 25 25 H 1.08994 * 109.47405 * 90.00269 * 1 2 3 26 26 H 1.09006 * 109.46911 * 209.99921 * 1 2 3 27 27 H 1.08996 * 109.47170 * 329.99434 * 1 2 3 28 28 H 1.09002 * 109.47068 * 30.00248 * 3 2 1 29 29 H 1.09001 * 109.47372 * 150.00336 * 3 2 1 30 30 H 1.08003 * 120.00056 * 179.97438 * 7 5 4 31 31 H 1.07991 * 119.98233 * 180.02562 * 8 7 5 32 32 H 1.08000 * 119.98254 * 180.02562 * 9 8 7 33 33 H 0.97002 * 119.99826 * 359.97438 * 14 12 2 34 34 H 1.09003 * 109.47193 * 299.99874 * 15 14 12 35 35 H 1.09001 * 109.47647 * 59.99787 * 15 14 12 36 36 H 1.09003 * 109.47100 * 300.00199 * 16 15 14 37 37 H 1.09001 * 109.46712 * 59.99482 * 16 15 14 38 38 H 0.97001 * 119.99830 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 6 1.5257 2.5032 -2.0739 6 9 0.3994 2.8932 -1.4379 7 6 1.7578 2.9026 -3.3790 8 6 2.9106 2.5039 -4.0292 9 6 3.8323 1.7068 -3.3770 10 6 3.6036 1.3096 -2.0712 11 17 4.7644 0.3128 -1.2512 12 6 2.1389 -1.1671 -0.0005 13 8 3.3548 -1.1671 -0.0010 14 7 1.4651 -2.3344 -0.0005 15 6 2.1976 -3.6030 -0.0005 16 6 1.2035 -4.7660 0.0001 17 6 1.9570 -6.0711 -0.0005 18 1 3.0369 -6.0711 -0.0017 19 6 1.2676 -7.2652 -0.0006 20 7 -0.0475 -7.2652 0.0003 21 14 2.2017 -8.8829 -0.0007 22 1 2.4493 -9.3117 1.3993 23 1 1.3991 -9.9178 -0.7008 24 1 3.4992 -8.7052 -0.7009 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6083 2.0284 0.5139 29 1 3.1499 1.1385 0.5138 30 1 1.0382 3.5259 -3.8891 31 1 3.0915 2.8160 -5.0471 32 1 4.7329 1.3961 -3.8858 33 1 0.4950 -2.3344 0.0002 34 1 2.8243 -3.6608 -0.8905 35 1 2.8243 -3.6608 0.8894 36 1 0.5771 -4.7081 0.8903 37 1 0.5764 -4.7084 -0.8896 38 1 -0.5325 -8.1053 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273113892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:57 Heat of formation + Delta-G solvation = -43.178022 kcal Electronic energy + Delta-G solvation = -23712.182929 eV Core-core repulsion = 19916.694760 eV Total energy + Delta-G solvation = -3795.488168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.20297 -40.02422 -39.04875 -36.24445 -35.64215 -34.68741 -32.92688 -31.91555 -30.61216 -29.42448 -27.38014 -25.96202 -24.30281 -23.00773 -22.12785 -20.92064 -19.62129 -18.07768 -17.68945 -16.76483 -16.52065 -16.40457 -16.12630 -15.56395 -15.28465 -14.76936 -14.49544 -14.01171 -13.95541 -13.87140 -13.47497 -13.27031 -13.12037 -12.69200 -12.53039 -12.32881 -12.24653 -11.68721 -11.59032 -11.27153 -11.10910 -11.01297 -10.73867 -10.59909 -10.24423 -9.62766 -9.41453 -9.22974 -9.10226 -8.88239 -8.51841 -8.44067 -8.14369 -6.06753 -4.09084 0.75038 0.78882 2.19239 2.89707 3.31173 3.32830 3.37329 3.42063 3.65333 3.95973 4.33167 4.39997 4.45522 4.57172 4.60776 4.92923 5.11024 5.16885 5.21524 5.30389 5.43234 5.57381 5.62440 5.68714 5.78059 5.90203 5.93754 6.30961 6.45290 6.45811 6.58215 6.82674 7.09723 7.20658 7.59797 7.67322 7.92855 8.29088 8.44918 8.96229 9.08991 9.55465 11.04985 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.003182 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.982097 B = 8797.934521 C = 9356.979692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.633 5.633 3 C 0.173 3.827 4 C -0.137 4.137 5 C 0.122 3.878 6 F -0.133 7.133 7 C -0.160 4.160 8 C -0.078 4.078 9 C -0.130 4.130 10 C 0.003 3.997 11 Cl -0.002 7.002 12 C 0.693 3.307 13 O -0.574 6.574 14 N -0.739 5.739 15 C 0.142 3.858 16 C 0.013 3.987 17 C -0.519 4.519 18 H 0.059 0.941 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.391 0.609 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 23.735 -5.399 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.371 5.371 3 C 0.049 3.951 4 C -0.140 4.140 5 C 0.102 3.898 6 F -0.111 7.111 7 C -0.179 4.179 8 C -0.096 4.096 9 C -0.149 4.149 10 C -0.025 4.025 11 Cl 0.027 6.973 12 C 0.395 3.605 13 O -0.451 6.451 14 N -0.394 5.394 15 C 0.019 3.981 16 C -0.024 4.024 17 C -0.558 4.558 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.226 0.774 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.930 23.469 -5.266 24.230 hybrid contribution -0.426 -0.915 -0.016 1.009 sum 2.504 22.554 -5.282 23.299 Atomic orbital electron populations 1.21710 0.79970 1.02967 1.01563 1.46990 1.06015 1.04415 1.79714 1.20078 0.99481 0.84955 0.90617 1.20234 0.94079 1.00177 0.99551 1.17345 0.83508 0.97756 0.91223 1.91497 1.48604 1.89144 1.81869 1.21173 0.99817 1.03475 0.93476 1.20963 0.92576 0.96126 0.99977 1.21205 1.01108 0.99397 0.93160 1.20922 0.92622 0.95385 0.93575 1.98503 1.56646 1.64959 1.77147 1.16077 0.85779 0.80310 0.78375 1.90987 1.10929 1.85908 1.57255 1.45688 1.09852 1.05291 1.78546 1.21540 0.95549 0.80479 1.00492 1.19315 0.94284 0.91163 0.97680 1.21053 0.93246 0.90380 1.51114 0.92258 1.24994 0.94881 0.99371 0.95056 1.69959 1.06086 1.26798 1.50545 0.86521 0.79857 0.83051 0.78179 1.20580 1.21200 1.19723 0.93157 0.91009 0.91067 0.89565 0.87798 0.84361 0.84290 0.84394 0.77442 0.92915 0.92896 0.96082 0.96100 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.25 59.84 0.61 1.51 16 2 N -0.63 -8.81 2.86 -188.74 -0.54 -9.35 16 3 C 0.17 2.13 5.22 -5.19 -0.03 2.11 16 4 C -0.14 -1.66 5.47 -104.52 -0.57 -2.24 16 5 C 0.12 1.31 7.24 -39.42 -0.29 1.02 16 6 F -0.13 -1.40 16.48 2.25 0.04 -1.36 16 7 C -0.16 -1.42 10.03 -39.51 -0.40 -1.81 16 8 C -0.08 -0.64 10.04 -39.60 -0.40 -1.04 16 9 C -0.13 -1.31 9.83 -39.54 -0.39 -1.70 16 10 C 0.00 0.04 6.31 -39.50 -0.25 -0.21 16 11 Cl 0.00 -0.04 23.22 -51.86 -1.20 -1.24 16 12 C 0.69 12.26 8.28 -86.92 -0.72 11.54 16 13 O -0.57 -11.40 11.61 5.29 0.06 -11.34 16 14 N -0.74 -13.54 5.42 -65.22 -0.35 -13.90 16 15 C 0.14 3.11 5.61 -4.04 -0.02 3.08 16 16 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 27 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 28 H 0.09 0.87 7.39 -51.93 -0.38 0.48 16 29 H 0.10 1.41 6.29 -51.93 -0.33 1.08 16 30 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.39 6.41 6.20 -40.82 -0.25 6.15 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 336.74 15.07 5.07 5.07 Total: -1.00 -31.93 336.74 -8.83 -40.76 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.63 Total: 1.30 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.00 Total: -0.88 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.16 Total: -48.86 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.06 Total: -11.34 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.20 Total: -1.24 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.93 -8.83 -40.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273113892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.417 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds