Wall clock time and date at job start Tue Mar 31 2020 10:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99899 * 2 1 4 4 C 1.50703 * 109.47064 * 270.00279 * 3 2 1 5 5 C 1.38459 * 120.01976 * 89.99990 * 4 3 2 6 6 F 1.35096 * 120.01818 * 359.97438 * 5 4 3 7 7 C 1.38443 * 119.96169 * 179.97438 * 5 4 3 8 8 C 1.38231 * 120.00353 * 359.97438 * 7 5 4 9 9 C 1.38206 * 120.03621 * 359.97438 * 8 7 5 10 10 C 1.38291 * 120.01607 * 269.72116 * 4 3 2 11 11 Cl 1.73602 * 120.00435 * 0.02562 * 10 4 3 12 12 C 1.34773 * 120.00646 * 180.02562 * 2 1 3 13 13 O 1.21585 * 120.00914 * 179.97438 * 12 2 1 14 14 N 1.34781 * 119.99568 * 359.97438 * 12 2 1 15 15 C 1.46500 * 120.00006 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47327 * 179.97438 * 15 14 12 17 17 C 1.50693 * 109.47316 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00422 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00084 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99759 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00029 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47592 * 89.99549 * 21 19 17 23 23 H 1.48505 * 109.46817 * 209.99469 * 21 19 17 24 24 H 1.48504 * 109.47006 * 329.98950 * 21 19 17 25 25 H 1.08994 * 109.47405 * 90.00269 * 1 2 3 26 26 H 1.09006 * 109.46911 * 209.99921 * 1 2 3 27 27 H 1.08996 * 109.47170 * 329.99434 * 1 2 3 28 28 H 1.09002 * 109.47068 * 30.00248 * 3 2 1 29 29 H 1.09001 * 109.47372 * 150.00336 * 3 2 1 30 30 H 1.08003 * 120.00056 * 179.97438 * 7 5 4 31 31 H 1.07991 * 119.98233 * 180.02562 * 8 7 5 32 32 H 1.08000 * 119.98254 * 180.02562 * 9 8 7 33 33 H 0.97002 * 119.99826 * 359.97438 * 14 12 2 34 34 H 1.09003 * 109.47193 * 299.99874 * 15 14 12 35 35 H 1.09001 * 109.47647 * 59.99787 * 15 14 12 36 36 H 1.09003 * 109.47100 * 300.00199 * 16 15 14 37 37 H 1.09001 * 109.46712 * 59.99482 * 16 15 14 38 38 H 0.97001 * 119.99830 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 6 1.5257 2.5032 -2.0739 6 9 0.3994 2.8932 -1.4379 7 6 1.7578 2.9026 -3.3790 8 6 2.9106 2.5039 -4.0292 9 6 3.8323 1.7068 -3.3770 10 6 3.6036 1.3096 -2.0712 11 17 4.7644 0.3128 -1.2512 12 6 2.1389 -1.1671 -0.0005 13 8 3.3548 -1.1671 -0.0010 14 7 1.4651 -2.3344 -0.0005 15 6 2.1976 -3.6030 -0.0005 16 6 1.2035 -4.7660 0.0001 17 6 1.9570 -6.0711 -0.0005 18 1 3.0369 -6.0711 -0.0017 19 6 1.2676 -7.2652 -0.0006 20 7 -0.0475 -7.2652 0.0003 21 14 2.2017 -8.8829 -0.0007 22 1 2.4493 -9.3117 1.3993 23 1 1.3991 -9.9178 -0.7008 24 1 3.4992 -8.7052 -0.7009 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6083 2.0284 0.5139 29 1 3.1499 1.1385 0.5138 30 1 1.0382 3.5259 -3.8891 31 1 3.0915 2.8160 -5.0471 32 1 4.7329 1.3961 -3.8858 33 1 0.4950 -2.3344 0.0002 34 1 2.8243 -3.6608 -0.8905 35 1 2.8243 -3.6608 0.8894 36 1 0.5771 -4.7081 0.8903 37 1 0.5764 -4.7084 -0.8896 38 1 -0.5325 -8.1053 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273113892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:57 Heat of formation + Delta-G solvation = -61.604210 kcal Electronic energy + Delta-G solvation = -23712.981948 eV Core-core repulsion = 19916.694760 eV Total energy + Delta-G solvation = -3796.287188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.99249 -41.21909 -40.00264 -37.21555 -36.95875 -36.27161 -34.82782 -32.99762 -31.39684 -31.20577 -28.31598 -27.35349 -25.97571 -23.79667 -23.24083 -22.60863 -20.97755 -19.16558 -18.64409 -18.47343 -17.63181 -17.40207 -17.32310 -16.57625 -16.48700 -16.41319 -15.67028 -15.39247 -15.24368 -15.02984 -14.50727 -14.39635 -14.27416 -14.11577 -13.77189 -13.50677 -13.30713 -13.03453 -12.92982 -12.52717 -12.51315 -12.40341 -12.29053 -12.11301 -11.82077 -11.57582 -11.40496 -10.68195 -10.58788 -10.09033 -9.86721 -9.61633 -9.50730 -8.23497 -6.33739 -0.04609 0.00679 1.26684 1.41781 1.42491 1.53911 1.76694 2.26960 2.40415 2.48568 3.11219 3.12483 3.19791 3.57578 3.69389 3.89826 4.21464 4.22797 4.33922 4.42548 4.50098 4.54690 4.59511 4.66764 4.83064 4.85784 4.88925 5.03368 5.12563 5.21612 5.34223 5.50329 5.56607 5.60519 5.73069 5.80271 5.96482 6.18391 6.79394 7.06236 7.35541 7.69554 8.88560 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.003182 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.982097 B = 8797.934521 C = 9356.979692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.627 5.627 3 C 0.171 3.829 4 C -0.153 4.153 5 C 0.114 3.886 6 F -0.132 7.132 7 C -0.153 4.153 8 C -0.066 4.066 9 C -0.135 4.135 10 C -0.020 4.020 11 Cl -0.035 7.035 12 C 0.688 3.312 13 O -0.598 6.598 14 N -0.738 5.738 15 C 0.166 3.834 16 C 0.025 3.975 17 C -0.545 4.545 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.266 1.266 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.150 0.850 33 H 0.400 0.600 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.007 0.993 37 H 0.005 0.995 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 24.945 -6.631 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.364 5.364 3 C 0.048 3.952 4 C -0.156 4.156 5 C 0.094 3.906 6 F -0.111 7.111 7 C -0.172 4.172 8 C -0.084 4.084 9 C -0.154 4.154 10 C -0.048 4.048 11 Cl -0.005 7.005 12 C 0.389 3.611 13 O -0.476 6.476 14 N -0.394 5.394 15 C 0.042 3.958 16 C -0.012 4.012 17 C -0.584 4.584 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.191 1.191 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.105 0.895 30 H 0.185 0.815 31 H 0.194 0.806 32 H 0.168 0.832 33 H 0.237 0.763 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.023 0.977 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.417 24.731 -6.497 25.685 hybrid contribution -0.333 -1.156 0.306 1.241 sum 2.084 23.575 -6.191 24.464 Atomic orbital electron populations 1.21902 0.78007 1.04336 1.02249 1.47003 1.07236 1.03656 1.78471 1.20173 0.99029 0.84553 0.91441 1.20204 0.94674 1.01341 0.99408 1.17466 0.83295 0.97851 0.91981 1.91495 1.48451 1.89105 1.82021 1.21575 1.00321 1.02708 0.92577 1.21395 0.91380 0.94379 1.01284 1.21479 1.02160 0.99465 0.92304 1.21110 0.92650 0.96343 0.94651 1.98485 1.57837 1.66220 1.78002 1.16216 0.85609 0.80944 0.78291 1.90985 1.12102 1.86418 1.58133 1.45422 1.10186 1.04596 1.79240 1.20977 0.94412 0.81117 0.99305 1.19109 0.94240 0.91837 0.96061 1.21454 0.93555 0.91897 1.51463 0.92359 1.25869 0.95792 1.03064 0.94405 1.70063 1.07544 1.27966 1.51066 0.85448 0.78635 0.78449 0.78536 1.19744 1.20450 1.19076 0.92749 0.90931 0.88444 0.87141 0.89529 0.81494 0.80575 0.83235 0.76325 0.94182 0.93957 0.97512 0.97661 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.58 10.25 127.77 1.31 2.89 16 2 N -0.63 -17.08 2.86 -869.32 -2.48 -19.56 16 3 C 0.17 4.14 5.22 85.63 0.45 4.59 16 4 C -0.15 -3.58 5.47 -19.80 -0.11 -3.69 16 5 C 0.11 2.20 7.24 22.37 0.16 2.36 16 6 F -0.13 -2.46 16.48 44.97 0.74 -1.72 16 7 C -0.15 -2.18 10.03 22.32 0.22 -1.95 16 8 C -0.07 -0.87 10.04 22.26 0.22 -0.64 16 9 C -0.14 -2.52 9.83 22.30 0.22 -2.30 16 10 C -0.02 -0.49 6.31 22.32 0.14 -0.35 16 11 Cl -0.03 -1.07 23.22 -2.72 -0.06 -1.13 16 12 C 0.69 24.60 8.28 179.05 1.48 26.08 16 13 O -0.60 -24.40 11.61 -3.98 -0.05 -24.45 16 14 N -0.74 -27.45 5.42 -478.53 -2.59 -30.05 16 15 C 0.17 7.46 5.61 86.38 0.48 7.95 16 16 C 0.03 1.30 5.09 29.85 0.15 1.45 16 17 C -0.55 -31.04 9.11 25.60 0.23 -30.81 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.01 0.42 5.46 84.66 0.46 0.88 16 20 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 21 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.47 6.36 -2.38 -0.02 1.46 16 27 H 0.10 1.49 7.89 -2.39 -0.02 1.47 16 28 H 0.11 2.06 7.39 -2.39 -0.02 2.04 16 29 H 0.09 2.40 6.29 -2.39 -0.01 2.39 16 30 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 32 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.40 13.20 6.20 -92.71 -0.58 12.63 16 34 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -69.53 336.74 3.81 -65.71 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.52 Total: 13.20 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 5.43 Total: 6.46 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -4.79 Total: -104.24 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.74 Total: -1.72 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.06 Total: -1.13 kcal Total: -69.53 3.81 -65.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273113892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.110 kcal (2) G-P(sol) polarization free energy of solvation -69.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds