Wall clock time and date at job start Tue Mar 31 2020 10:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47140 * 2 1 4 4 N 1.46504 * 109.46789 * 240.00205 * 2 1 3 5 5 C 1.34769 * 119.99864 * 82.99538 * 4 2 1 6 6 O 1.21588 * 120.00529 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00047 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00333 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47141 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.46847 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00214 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99932 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99953 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00008 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47144 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46793 * 120.00281 * 14 12 10 17 17 H 1.48501 * 109.47161 * 240.00531 * 14 12 10 18 18 C 1.50699 * 109.47075 * 120.00319 * 2 1 3 19 19 C 1.38456 * 120.01981 * 73.36182 * 18 2 1 20 20 F 1.35097 * 120.02031 * 359.97266 * 19 18 2 21 21 C 1.38446 * 119.96047 * 180.02562 * 19 18 2 22 22 C 1.38228 * 120.00415 * 359.97438 * 21 19 18 23 23 C 1.38199 * 120.03441 * 359.97438 * 22 21 19 24 24 C 1.38293 * 120.01879 * 253.08315 * 18 2 1 25 25 Cl 1.73601 * 119.99956 * 359.97438 * 24 18 2 26 26 H 1.09007 * 109.46979 * 299.99471 * 1 2 3 27 27 H 1.09001 * 109.47378 * 59.99568 * 1 2 3 28 28 H 1.09003 * 109.47206 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99968 * 262.99255 * 4 2 1 30 30 H 0.97000 * 119.99785 * 0.02562 * 7 5 4 31 31 H 1.09004 * 109.46693 * 300.00180 * 8 7 5 32 32 H 1.08999 * 109.47204 * 59.99764 * 8 7 5 33 33 H 1.08994 * 109.47472 * 299.99903 * 9 8 7 34 34 H 1.09001 * 109.47435 * 60.00128 * 9 8 7 35 35 H 0.96998 * 120.00242 * 179.97438 * 13 12 10 36 36 H 1.08006 * 119.99715 * 180.02562 * 21 19 18 37 37 H 1.07997 * 119.98094 * 179.97438 * 22 21 19 38 38 H 1.08006 * 119.97946 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1086 -0.0287 -2.3667 6 8 1.7854 1.1417 -2.4299 7 7 2.5583 -0.6638 -3.4671 8 6 2.6571 0.0558 -4.7394 9 6 3.1905 -0.8879 -5.8190 10 6 3.2915 -0.1478 -7.1279 11 1 3.0044 0.8918 -7.1839 12 6 3.7514 -0.7976 -8.2536 13 7 4.1014 -2.0635 -8.1853 14 14 3.8773 0.1200 -9.8758 15 1 3.4264 1.5223 -9.6876 16 1 5.2876 0.1121 -10.3408 17 1 3.0184 -0.5448 -10.8885 18 6 2.0323 -0.7105 1.2304 19 6 1.9396 -2.0890 1.3207 20 9 1.3982 -2.7979 0.3061 21 6 2.4010 -2.7404 2.4519 22 6 2.9543 -2.0147 3.4901 23 6 3.0478 -0.6388 3.3995 24 6 2.5915 0.0135 2.2676 25 17 2.7154 1.7412 2.1521 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 2.2765 -1.6242 -1.1458 30 1 2.8165 -1.5975 -3.4167 31 1 1.6709 0.4185 -5.0291 32 1 3.3364 0.9008 -4.6271 33 1 4.1765 -1.2510 -5.5295 34 1 2.5108 -1.7327 -5.9313 35 1 4.4246 -2.5208 -8.9773 36 1 2.3293 -3.8157 2.5227 37 1 3.3137 -2.5232 4.3725 38 1 3.4807 -0.0727 4.2111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273572280.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:05 Heat of formation + Delta-G solvation = -66.903907 kcal Electronic energy + Delta-G solvation = -23218.699235 eV Core-core repulsion = 19422.182235 eV Total energy + Delta-G solvation = -3796.517000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.43632 -40.14872 -39.24871 -36.86961 -35.93400 -34.57556 -32.87136 -31.82137 -30.90958 -29.76510 -28.84488 -24.94116 -24.12578 -23.40654 -21.75337 -20.84638 -20.43688 -18.45398 -18.02991 -17.10094 -16.46993 -16.30090 -16.05485 -15.55750 -15.15053 -15.10678 -14.50630 -14.37472 -14.20180 -13.93468 -13.71300 -13.34764 -13.29299 -12.87005 -12.44584 -12.27695 -12.23102 -11.94250 -11.79864 -11.66770 -11.14370 -11.02766 -10.81763 -10.58871 -10.28769 -9.89897 -9.54561 -9.36805 -9.20689 -9.19493 -9.01336 -8.46089 -8.21495 -6.06402 -4.08725 0.47387 0.52458 1.61814 2.82729 3.13131 3.30643 3.38161 3.43905 3.62447 3.73061 4.02863 4.31278 4.35061 4.43252 4.67146 4.72349 4.89754 5.13665 5.20574 5.30779 5.32128 5.45514 5.50276 5.64601 5.68115 5.86803 6.11148 6.22060 6.34178 6.44418 6.60924 6.82044 7.05031 7.26590 7.60908 7.67401 7.93256 8.29340 8.46984 8.96424 9.03910 9.55858 11.05362 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.022704 B = 0.002658 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.947072 B =10531.004431 C =11093.775502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.198 3.802 3 H 0.109 0.891 4 N -0.749 5.749 5 C 0.702 3.298 6 O -0.595 6.595 7 N -0.738 5.738 8 C 0.141 3.859 9 C 0.012 3.988 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.118 4.118 19 C 0.120 3.880 20 F -0.124 7.124 21 C -0.147 4.147 22 C -0.079 4.079 23 C -0.118 4.118 24 C -0.001 4.001 25 Cl -0.044 7.044 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.394 0.606 30 H 0.393 0.607 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.261 0.739 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 -1.932 28.189 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.092 3.908 3 H 0.127 0.873 4 N -0.408 5.408 5 C 0.401 3.599 6 O -0.474 6.474 7 N -0.391 5.391 8 C 0.018 3.982 9 C -0.025 4.025 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.121 4.121 19 C 0.100 3.900 20 F -0.103 7.103 21 C -0.166 4.166 22 C -0.097 4.097 23 C -0.137 4.137 24 C -0.028 4.028 25 Cl -0.015 7.015 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.230 0.770 30 H 0.226 0.774 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.702 -0.832 27.909 28.166 hybrid contribution 0.295 -0.605 -1.037 1.236 sum -3.407 -1.436 26.872 27.125 Atomic orbital electron populations 1.22197 0.93929 1.02571 1.03166 1.19633 0.94524 0.97089 0.79524 0.87284 1.45298 1.72484 1.14889 1.08088 1.15999 0.78623 0.85022 0.80217 1.90882 1.56640 1.15038 1.84853 1.45530 1.69304 1.14954 1.09307 1.21591 1.00548 0.95741 0.80325 1.19331 0.96556 0.94656 0.91975 1.21098 1.43705 0.97542 0.93428 0.92157 1.25001 0.95207 0.94919 0.99232 1.69968 1.44200 1.09712 1.29492 0.86459 0.77676 0.80076 0.83373 1.19563 1.20968 1.20959 1.19923 1.02162 0.92321 0.97647 1.17327 0.97976 0.88315 0.86409 1.91500 1.83254 1.77863 1.57654 1.21299 1.00788 1.01639 0.92847 1.21003 0.97218 0.93013 0.98477 1.21149 1.00680 0.94825 0.97056 1.20566 1.00720 0.86041 0.95477 1.98415 1.96508 1.08739 1.97789 0.91673 0.90613 0.92239 0.77022 0.77417 0.92757 0.92767 0.95980 0.95959 0.92946 0.83776 0.83807 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.36 37.16 0.35 -1.57 16 2 C 0.20 2.55 2.43 -69.08 -0.17 2.38 16 3 H 0.11 1.58 5.82 -51.93 -0.30 1.28 16 4 N -0.75 -10.80 4.86 -59.81 -0.29 -11.09 16 5 C 0.70 12.99 8.50 -86.92 -0.74 12.25 16 6 O -0.60 -13.09 16.03 5.29 0.08 -13.01 16 7 N -0.74 -13.77 5.56 -65.23 -0.36 -14.14 16 8 C 0.14 3.12 5.61 -4.04 -0.02 3.10 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 11 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 14 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C -0.12 -1.23 4.95 -104.52 -0.52 -1.75 16 19 C 0.12 1.11 6.76 -39.42 -0.27 0.85 16 20 F -0.12 -1.28 14.22 2.25 0.03 -1.25 16 21 C -0.15 -0.99 10.03 -39.51 -0.40 -1.38 16 22 C -0.08 -0.43 10.04 -39.60 -0.40 -0.82 16 23 C -0.12 -0.78 9.83 -39.54 -0.39 -1.17 16 24 C 0.00 -0.01 6.31 -39.51 -0.25 -0.25 16 25 Cl -0.04 -0.43 27.06 -51.86 -1.40 -1.84 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 28 H 0.06 0.68 7.46 -51.93 -0.39 0.29 16 29 H 0.39 4.98 6.37 -40.82 -0.26 4.72 16 30 H 0.39 6.43 8.49 -40.82 -0.35 6.08 16 31 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 38 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -32.76 342.56 -9.05 -41.82 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.64 Total: 5.03 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -3.35 Total: -1.61 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.08 Total: -50.94 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.03 Total: -1.25 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.40 Total: -1.84 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.76 -9.05 -41.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273572280.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.089 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds