Wall clock time and date at job start Tue Mar 31 2020 10:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47140 * 2 1 4 4 N 1.46504 * 109.46789 * 240.00205 * 2 1 3 5 5 C 1.34769 * 119.99864 * 82.99538 * 4 2 1 6 6 O 1.21588 * 120.00529 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00047 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00333 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47141 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.46847 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00214 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99932 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99953 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00008 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47144 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46793 * 120.00281 * 14 12 10 17 17 H 1.48501 * 109.47161 * 240.00531 * 14 12 10 18 18 C 1.50699 * 109.47075 * 120.00319 * 2 1 3 19 19 C 1.38456 * 120.01981 * 73.36182 * 18 2 1 20 20 F 1.35097 * 120.02031 * 359.97266 * 19 18 2 21 21 C 1.38446 * 119.96047 * 180.02562 * 19 18 2 22 22 C 1.38228 * 120.00415 * 359.97438 * 21 19 18 23 23 C 1.38199 * 120.03441 * 359.97438 * 22 21 19 24 24 C 1.38293 * 120.01879 * 253.08315 * 18 2 1 25 25 Cl 1.73601 * 119.99956 * 359.97438 * 24 18 2 26 26 H 1.09007 * 109.46979 * 299.99471 * 1 2 3 27 27 H 1.09001 * 109.47378 * 59.99568 * 1 2 3 28 28 H 1.09003 * 109.47206 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99968 * 262.99255 * 4 2 1 30 30 H 0.97000 * 119.99785 * 0.02562 * 7 5 4 31 31 H 1.09004 * 109.46693 * 300.00180 * 8 7 5 32 32 H 1.08999 * 109.47204 * 59.99764 * 8 7 5 33 33 H 1.08994 * 109.47472 * 299.99903 * 9 8 7 34 34 H 1.09001 * 109.47435 * 60.00128 * 9 8 7 35 35 H 0.96998 * 120.00242 * 179.97438 * 13 12 10 36 36 H 1.08006 * 119.99715 * 180.02562 * 21 19 18 37 37 H 1.07997 * 119.98094 * 179.97438 * 22 21 19 38 38 H 1.08006 * 119.97946 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1086 -0.0287 -2.3667 6 8 1.7854 1.1417 -2.4299 7 7 2.5583 -0.6638 -3.4671 8 6 2.6571 0.0558 -4.7394 9 6 3.1905 -0.8879 -5.8190 10 6 3.2915 -0.1478 -7.1279 11 1 3.0044 0.8918 -7.1839 12 6 3.7514 -0.7976 -8.2536 13 7 4.1014 -2.0635 -8.1853 14 14 3.8773 0.1200 -9.8758 15 1 3.4264 1.5223 -9.6876 16 1 5.2876 0.1121 -10.3408 17 1 3.0184 -0.5448 -10.8885 18 6 2.0323 -0.7105 1.2304 19 6 1.9396 -2.0890 1.3207 20 9 1.3982 -2.7979 0.3061 21 6 2.4010 -2.7404 2.4519 22 6 2.9543 -2.0147 3.4901 23 6 3.0478 -0.6388 3.3995 24 6 2.5915 0.0135 2.2676 25 17 2.7154 1.7412 2.1521 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 2.2765 -1.6242 -1.1458 30 1 2.8165 -1.5975 -3.4167 31 1 1.6709 0.4185 -5.0291 32 1 3.3364 0.9008 -4.6271 33 1 4.1765 -1.2510 -5.5295 34 1 2.5108 -1.7327 -5.9313 35 1 4.4246 -2.5208 -8.9773 36 1 2.3293 -3.8157 2.5227 37 1 3.3137 -2.5232 4.3725 38 1 3.4807 -0.0727 4.2111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273572280.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:04 Heat of formation + Delta-G solvation = -87.691237 kcal Electronic energy + Delta-G solvation = -23219.600641 eV Core-core repulsion = 19422.182235 eV Total energy + Delta-G solvation = -3797.418406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.15293 -41.28587 -40.23964 -37.55194 -37.18999 -36.25412 -34.84902 -33.02450 -31.52535 -31.19502 -30.09032 -26.77274 -25.14744 -24.04030 -23.12842 -22.37521 -21.77171 -19.72770 -18.82018 -18.47037 -17.90966 -17.31350 -16.83948 -16.64545 -16.53898 -16.46892 -15.84577 -15.58380 -15.33043 -15.16928 -14.85722 -14.50463 -14.36285 -14.28008 -13.83833 -13.31571 -13.21153 -12.96845 -12.91510 -12.85107 -12.51334 -12.43825 -12.40128 -12.25211 -11.68628 -11.63686 -11.50575 -11.22241 -10.61515 -10.44757 -9.99617 -9.80076 -9.79260 -8.24167 -6.34460 -0.13100 -0.06357 0.95468 1.41237 1.41771 1.55150 1.68881 2.11087 2.37115 2.41981 3.10281 3.10583 3.23334 3.30109 3.72146 3.83007 4.13180 4.21212 4.22138 4.38293 4.45729 4.51337 4.58833 4.72818 4.79803 4.85562 4.96713 5.06213 5.12947 5.18569 5.29746 5.42017 5.50234 5.58603 5.65569 5.77892 5.95421 6.16699 6.78718 7.03767 7.34768 7.53535 8.88109 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.022704 B = 0.002658 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.947072 B =10531.004431 C =11093.775502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.194 3.806 3 H 0.090 0.910 4 N -0.732 5.732 5 C 0.701 3.299 6 O -0.632 6.632 7 N -0.733 5.733 8 C 0.161 3.839 9 C 0.024 3.976 10 C -0.545 4.545 11 H 0.059 0.941 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.136 4.136 19 C 0.102 3.898 20 F -0.136 7.136 21 C -0.140 4.140 22 C -0.063 4.063 23 C -0.113 4.113 24 C -0.014 4.014 25 Cl -0.060 7.060 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.404 0.596 30 H 0.405 0.595 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.008 0.992 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.168 0.832 37 H 0.184 0.816 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 -2.833 29.994 30.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.089 3.911 3 H 0.108 0.892 4 N -0.390 5.390 5 C 0.401 3.599 6 O -0.513 6.513 7 N -0.388 5.388 8 C 0.037 3.963 9 C -0.013 4.013 10 C -0.584 4.584 11 H 0.077 0.923 12 C -0.192 4.192 13 N -0.566 5.566 14 Si 0.791 3.209 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.138 4.138 19 C 0.082 3.918 20 F -0.114 7.114 21 C -0.159 4.159 22 C -0.080 4.080 23 C -0.131 4.131 24 C -0.041 4.041 25 Cl -0.030 7.030 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.242 0.758 30 H 0.240 0.760 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.186 0.814 37 H 0.201 0.799 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.246 -1.772 29.761 29.990 hybrid contribution 0.169 -0.392 -1.459 1.520 sum -3.078 -2.164 28.303 28.551 Atomic orbital electron populations 1.22120 0.93502 1.02801 1.02759 1.19687 0.94960 0.96473 0.79940 0.89171 1.45198 1.71298 1.15221 1.07320 1.16082 0.78261 0.84618 0.80934 1.90854 1.58176 1.16758 1.85535 1.45244 1.69658 1.15392 1.08480 1.21094 0.99391 0.94793 0.81014 1.19127 0.95476 0.94453 0.92283 1.21487 1.44129 0.97856 0.94905 0.92279 1.25883 0.94594 0.95781 1.02959 1.70068 1.44675 1.11116 1.30779 0.85376 0.77980 0.78883 0.78684 1.18982 1.20158 1.20161 1.19693 1.04235 0.92919 0.96976 1.17563 0.99025 0.87933 0.87243 1.91467 1.83634 1.77961 1.58361 1.21653 0.99445 1.02957 0.91828 1.21490 0.95145 0.92376 0.99037 1.21509 0.99489 0.95651 0.96478 1.20739 1.01694 0.85336 0.96326 1.98409 1.96631 1.10130 1.97875 0.89848 0.93183 0.91598 0.75807 0.75984 0.93735 0.93742 0.97332 0.97341 0.92531 0.81405 0.79852 0.81628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.36 71.98 0.67 -3.07 16 2 C 0.19 5.08 2.43 44.24 0.11 5.19 16 3 H 0.09 2.72 5.82 -2.39 -0.01 2.71 16 4 N -0.73 -21.39 4.86 -461.42 -2.24 -23.64 16 5 C 0.70 26.57 8.50 179.06 1.52 28.09 16 6 O -0.63 -28.69 16.03 -3.99 -0.06 -28.76 16 7 N -0.73 -27.91 5.56 -478.54 -2.66 -30.57 16 8 C 0.16 7.34 5.61 86.38 0.48 7.82 16 9 C 0.02 1.26 5.09 29.85 0.15 1.41 16 10 C -0.55 -31.16 9.11 25.60 0.23 -30.92 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.01 0.37 5.46 84.66 0.46 0.83 16 13 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 14 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 18 C -0.14 -2.72 4.95 -19.80 -0.10 -2.81 16 19 C 0.10 1.74 6.76 22.37 0.15 1.89 16 20 F -0.14 -2.67 14.22 44.97 0.64 -2.03 16 21 C -0.14 -1.41 10.03 22.32 0.22 -1.19 16 22 C -0.06 -0.41 10.04 22.26 0.22 -0.19 16 23 C -0.11 -1.14 9.83 22.30 0.22 -0.92 16 24 C -0.01 -0.23 6.31 22.32 0.14 -0.09 16 25 Cl -0.06 -1.17 27.06 -2.72 -0.07 -1.24 16 26 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 28 H 0.06 1.49 7.46 -2.39 -0.02 1.48 16 29 H 0.40 10.17 6.37 -92.71 -0.59 9.58 16 30 H 0.41 13.38 8.49 -92.71 -0.79 12.60 16 31 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 38 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -71.74 342.56 2.14 -69.60 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -0.27 Total: 19.02 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 4.50 Total: 6.03 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -4.62 Total: -108.97 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.06 Total: -28.76 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.64 Total: -2.03 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.07 Total: -1.24 kcal Total: -71.74 2.14 -69.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273572280.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.088 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds