Wall clock time and date at job start Tue Mar 31 2020 10:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47308 * 2 1 4 4 S 1.81003 * 109.47177 * 240.00410 * 2 1 3 5 5 C 1.76202 * 100.00137 * 64.99748 * 4 2 1 6 6 N 1.32391 * 126.25911 * 0.03049 * 5 4 2 7 7 N 1.28507 * 110.20751 * 179.97438 * 6 5 4 8 8 C 1.33102 * 109.74317 * 359.97438 * 7 6 5 9 9 C 1.39784 * 126.56422 * 179.97438 * 8 7 6 10 10 H 1.07990 * 119.99937 * 186.21013 * 9 8 7 11 11 C 1.40079 * 119.99787 * 6.21173 * 9 8 7 12 12 N 1.30818 * 120.00007 * 6.44701 * 11 9 8 13 13 Si 1.86802 * 120.00049 * 186.44417 * 11 9 8 14 14 H 1.48499 * 109.47321 * 265.01629 * 13 11 9 15 15 H 1.48499 * 109.46774 * 25.01756 * 13 11 9 16 16 H 1.48500 * 109.47127 * 145.01048 * 13 11 9 17 17 N 1.36665 * 126.26238 * 180.29412 * 5 4 2 18 18 C 1.46502 * 127.15103 * 0.03828 * 17 5 4 19 19 C 1.50696 * 109.47558 * 120.00460 * 2 1 3 20 20 C 1.38361 * 119.84688 * 59.71764 * 19 2 1 21 21 C 1.37949 * 120.15159 * 179.76873 * 20 19 2 22 22 C 1.39637 * 119.84529 * 0.51176 * 21 20 19 23 23 C 1.43193 * 120.14799 * 179.76420 * 22 21 20 24 24 N 6.84441 * 109.46601 * 119.99909 * 2 1 3 25 25 C 1.39631 * 119.69559 * 359.74929 * 22 21 20 26 26 C 1.37948 * 119.84869 * 359.97438 * 25 22 21 27 27 H 1.08999 * 109.47033 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47296 * 299.99736 * 1 2 3 29 29 H 1.09002 * 109.47274 * 59.99488 * 1 2 3 30 30 H 0.97004 * 120.00095 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.47327 * 270.17862 * 18 17 5 32 32 H 1.09003 * 109.47363 * 30.17355 * 18 17 5 33 33 H 1.08999 * 109.47241 * 150.17819 * 18 17 5 34 34 H 1.07997 * 119.92662 * 0.03457 * 20 19 2 35 35 H 1.07992 * 120.07696 * 180.28430 * 21 20 19 36 36 H 1.08001 * 120.07539 * 179.97438 * 25 22 21 37 37 H 1.08001 * 119.92238 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8531 -1.4779 5 6 1.5438 0.2424 -2.7258 6 7 0.8580 1.3575 -2.5284 7 7 0.5864 1.9165 -3.6532 8 6 1.0859 1.1885 -4.6493 9 6 0.9947 1.4721 -6.0150 10 1 1.3524 0.7563 -6.7402 11 6 0.4392 2.6848 -6.4430 12 7 0.1221 3.6039 -5.5678 13 14 0.1513 2.9895 -8.2633 14 1 1.3086 3.7269 -8.8309 15 1 0.0003 1.6894 -8.9649 16 1 -1.0840 3.7942 -8.4412 17 7 1.7066 0.0938 -4.0745 18 6 2.3977 -0.9963 -4.7675 19 6 2.0324 -0.7105 1.2303 20 6 1.6914 -2.0335 1.4490 21 6 2.1518 -2.6913 2.5707 22 6 2.9548 -2.0158 3.4920 23 6 3.4320 -2.6909 4.6611 24 7 3.8108 -3.2265 5.5887 25 6 3.2905 -0.6791 3.2677 26 6 2.8279 -0.0352 2.1388 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.2622 4.4439 -5.8641 31 1 3.4503 -0.7403 -4.8885 32 1 2.3115 -1.9116 -4.1820 33 1 1.9458 -1.1480 -5.7477 34 1 1.0670 -2.5536 0.7377 35 1 1.8887 -3.7253 2.7379 36 1 3.9109 -0.1506 3.9764 37 1 3.0872 0.9986 1.9640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279989415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:07 Heat of formation + Delta-G solvation = 118.688226 kcal Electronic energy + Delta-G solvation = -21908.777958 eV Core-core repulsion = 18585.414519 eV Total energy + Delta-G solvation = -3323.363439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56930 -39.83407 -36.82681 -34.31695 -33.71456 -33.31407 -31.36916 -30.07100 -29.18571 -26.53422 -25.56608 -24.81235 -23.03944 -21.78024 -20.87737 -20.43932 -19.15661 -17.43828 -16.69926 -16.12233 -15.53010 -15.18296 -14.82186 -14.75524 -14.59362 -14.29580 -13.99050 -13.70240 -13.51421 -13.30564 -13.19419 -12.85955 -12.48850 -12.35475 -12.22983 -12.11031 -11.74502 -11.43791 -11.34659 -11.22238 -11.07502 -10.93904 -10.42545 -10.11624 -9.74085 -9.61589 -9.27515 -8.94358 -8.75879 -8.50934 -8.41592 -6.91224 -6.71366 -4.61525 0.43856 1.09733 1.96311 2.41568 2.64156 2.82868 2.87645 3.03795 3.07543 3.30783 3.62886 3.65874 3.83584 4.18645 4.35535 4.47681 4.57674 4.62270 5.09883 5.11827 5.26801 5.31360 5.38972 5.50057 5.58361 5.74169 5.84540 5.89256 6.00311 6.01527 6.03041 6.11861 6.36369 6.53743 6.60303 6.74402 6.87912 7.19779 7.22717 7.43422 7.84146 8.13615 8.65567 8.80478 10.22140 10.57512 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.040679 B = 0.002630 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.158590 B =10644.094385 C =10982.061136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 H 0.108 0.892 4 S -0.044 6.044 5 C 0.045 3.955 6 N -0.282 5.282 7 N -0.335 5.335 8 C 0.349 3.651 9 C -0.448 4.448 10 H 0.084 0.916 11 C 0.080 3.920 12 N -0.737 5.737 13 Si 0.919 3.081 14 H -0.270 1.270 15 H -0.262 1.262 16 H -0.274 1.274 17 N -0.515 5.515 18 C 0.102 3.898 19 C -0.028 4.028 20 C -0.107 4.107 21 C -0.067 4.067 22 C -0.038 4.038 23 C 0.260 3.740 24 N -0.426 5.426 25 C -0.068 4.068 26 C -0.105 4.105 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.280 0.720 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 -8.458 8.758 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 H 0.126 0.874 4 S 0.186 5.814 5 C -0.327 4.327 6 N -0.128 5.128 7 N -0.183 5.183 8 C 0.104 3.896 9 C -0.488 4.488 10 H 0.102 0.898 11 C -0.145 4.145 12 N -0.361 5.361 13 Si 0.743 3.257 14 H -0.195 1.195 15 H -0.186 1.186 16 H -0.199 1.199 17 N -0.217 5.217 18 C -0.043 4.043 19 C -0.031 4.031 20 C -0.126 4.126 21 C -0.088 4.088 22 C -0.042 4.042 23 C -0.055 4.055 24 N -0.101 5.101 25 C -0.088 4.088 26 C -0.125 4.125 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.770 -8.956 10.863 14.574 hybrid contribution -0.193 0.492 -1.976 2.046 sum 3.577 -8.464 8.886 12.783 Atomic orbital electron populations 1.22126 0.91267 1.02564 1.04351 1.22059 1.00299 1.02170 0.91278 0.87354 1.84535 1.71716 1.30427 0.94736 1.25291 1.16451 1.04440 0.86503 1.74444 1.12132 1.03296 1.22921 1.75427 1.27429 1.23217 0.92220 1.21604 0.90498 0.81629 0.95819 1.18096 1.39622 1.03290 0.87824 0.89793 1.25780 0.93743 0.94975 1.00050 1.69984 1.26485 1.04312 1.35341 0.86125 0.78678 0.79385 0.81491 1.19477 1.18570 1.19890 1.46043 1.48865 1.22524 1.04278 1.21492 0.96678 0.88449 0.97727 1.19764 0.95044 0.93983 0.94259 1.21070 1.00099 0.94064 0.97352 1.21136 0.95065 0.99853 0.92722 1.16006 1.03086 0.93854 0.91242 1.25766 0.93408 0.93403 0.92964 1.81254 1.09168 1.08642 1.11059 1.21131 0.98080 0.92310 0.97296 1.21049 0.97159 1.00775 0.93480 0.92294 0.92201 0.88924 0.90922 0.92505 0.91581 0.90383 0.84255 0.84889 0.84868 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.82 37.15 0.33 -1.74 16 2 C -0.03 -0.40 2.52 -27.89 -0.07 -0.47 16 3 H 0.11 1.65 7.87 -51.91 -0.41 1.24 16 4 S -0.04 -0.72 20.85 -107.50 -2.24 -2.96 16 5 C 0.04 1.00 7.77 -87.28 -0.68 0.32 16 6 N -0.28 -7.18 9.74 30.89 0.30 -6.87 16 7 N -0.34 -9.62 10.56 31.26 0.33 -9.29 16 8 C 0.35 9.37 7.50 -154.81 -1.16 8.21 16 9 C -0.45 -11.49 9.05 -38.31 -0.35 -11.84 16 10 H 0.08 1.95 7.26 -52.49 -0.38 1.57 16 11 C 0.08 1.99 5.49 -17.29 -0.09 1.90 16 12 N -0.74 -19.67 12.00 55.56 0.67 -19.00 16 13 Si 0.92 18.01 29.57 -169.99 -5.03 12.99 16 14 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 15 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 16 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 17 N -0.51 -11.84 3.26 -123.17 -0.40 -12.25 16 18 C 0.10 1.76 10.89 59.85 0.65 2.42 16 19 C -0.03 -0.30 4.79 -104.53 -0.50 -0.80 16 20 C -0.11 -1.01 8.75 -39.64 -0.35 -1.35 16 21 C -0.07 -0.56 9.76 -39.17 -0.38 -0.94 16 22 C -0.04 -0.33 5.73 -106.93 -0.61 -0.95 16 23 C 0.26 2.67 15.33 -22.47 -0.34 2.33 16 24 N -0.43 -5.33 18.54 41.84 0.78 -4.55 16 25 C -0.07 -0.55 9.76 -39.17 -0.38 -0.93 16 26 C -0.11 -0.97 9.65 -39.64 -0.38 -1.35 16 27 H 0.06 0.75 7.36 -51.93 -0.38 0.37 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 1.71 5.89 -51.93 -0.31 1.41 16 30 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 33 H 0.08 1.28 7.48 -51.93 -0.39 0.89 16 34 H 0.14 1.24 7.55 -52.49 -0.40 0.85 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.14 1.12 7.94 -52.49 -0.42 0.70 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -31.93 341.54 -8.68 -40.61 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.91 Total: 1.39 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -4.32 Total: -5.21 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 1.67 Total: -51.97 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -2.24 Total: -2.96 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.93 -8.68 -40.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279989415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.301 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds