Wall clock time and date at job start Tue Mar 31 2020 10:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47308 * 2 1 4 4 S 1.81003 * 109.47177 * 240.00410 * 2 1 3 5 5 C 1.76202 * 100.00137 * 64.99748 * 4 2 1 6 6 N 1.32391 * 126.25911 * 0.03049 * 5 4 2 7 7 N 1.28507 * 110.20751 * 179.97438 * 6 5 4 8 8 C 1.33102 * 109.74317 * 359.97438 * 7 6 5 9 9 C 1.39784 * 126.56422 * 179.97438 * 8 7 6 10 10 H 1.07990 * 119.99937 * 186.21013 * 9 8 7 11 11 C 1.40079 * 119.99787 * 6.21173 * 9 8 7 12 12 N 1.30818 * 120.00007 * 6.44701 * 11 9 8 13 13 Si 1.86802 * 120.00049 * 186.44417 * 11 9 8 14 14 H 1.48499 * 109.47321 * 265.01629 * 13 11 9 15 15 H 1.48499 * 109.46774 * 25.01756 * 13 11 9 16 16 H 1.48500 * 109.47127 * 145.01048 * 13 11 9 17 17 N 1.36665 * 126.26238 * 180.29412 * 5 4 2 18 18 C 1.46502 * 127.15103 * 0.03828 * 17 5 4 19 19 C 1.50696 * 109.47558 * 120.00460 * 2 1 3 20 20 C 1.38361 * 119.84688 * 59.71764 * 19 2 1 21 21 C 1.37949 * 120.15159 * 179.76873 * 20 19 2 22 22 C 1.39637 * 119.84529 * 0.51176 * 21 20 19 23 23 C 1.43193 * 120.14799 * 179.76420 * 22 21 20 24 24 N 6.84441 * 109.46601 * 119.99909 * 2 1 3 25 25 C 1.39631 * 119.69559 * 359.74929 * 22 21 20 26 26 C 1.37948 * 119.84869 * 359.97438 * 25 22 21 27 27 H 1.08999 * 109.47033 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47296 * 299.99736 * 1 2 3 29 29 H 1.09002 * 109.47274 * 59.99488 * 1 2 3 30 30 H 0.97004 * 120.00095 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.47327 * 270.17862 * 18 17 5 32 32 H 1.09003 * 109.47363 * 30.17355 * 18 17 5 33 33 H 1.08999 * 109.47241 * 150.17819 * 18 17 5 34 34 H 1.07997 * 119.92662 * 0.03457 * 20 19 2 35 35 H 1.07992 * 120.07696 * 180.28430 * 21 20 19 36 36 H 1.08001 * 120.07539 * 179.97438 * 25 22 21 37 37 H 1.08001 * 119.92238 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8531 -1.4779 5 6 1.5438 0.2424 -2.7258 6 7 0.8580 1.3575 -2.5284 7 7 0.5864 1.9165 -3.6532 8 6 1.0859 1.1885 -4.6493 9 6 0.9947 1.4721 -6.0150 10 1 1.3524 0.7563 -6.7402 11 6 0.4392 2.6848 -6.4430 12 7 0.1221 3.6039 -5.5678 13 14 0.1513 2.9895 -8.2633 14 1 1.3086 3.7269 -8.8309 15 1 0.0003 1.6894 -8.9649 16 1 -1.0840 3.7942 -8.4412 17 7 1.7066 0.0938 -4.0745 18 6 2.3977 -0.9963 -4.7675 19 6 2.0324 -0.7105 1.2303 20 6 1.6914 -2.0335 1.4490 21 6 2.1518 -2.6913 2.5707 22 6 2.9548 -2.0158 3.4920 23 6 3.4320 -2.6909 4.6611 24 7 3.8108 -3.2265 5.5887 25 6 3.2905 -0.6791 3.2677 26 6 2.8279 -0.0352 2.1388 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.2622 4.4439 -5.8641 31 1 3.4503 -0.7403 -4.8885 32 1 2.3115 -1.9116 -4.1820 33 1 1.9458 -1.1480 -5.7477 34 1 1.0670 -2.5536 0.7377 35 1 1.8887 -3.7253 2.7379 36 1 3.9109 -0.1506 3.9764 37 1 3.0872 0.9986 1.9640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279989415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:06 Heat of formation + Delta-G solvation = 102.188083 kcal Electronic energy + Delta-G solvation = -21909.493457 eV Core-core repulsion = 18585.414519 eV Total energy + Delta-G solvation = -3324.078939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.40283 -40.59865 -37.70724 -35.63770 -35.33596 -34.92134 -32.06879 -31.42935 -30.63825 -28.17179 -27.34823 -25.77717 -23.76519 -22.91045 -22.71053 -22.05558 -19.89779 -19.22435 -18.09479 -17.27962 -16.98298 -16.48271 -16.26411 -16.00623 -15.57532 -15.43458 -15.07274 -14.93324 -14.55833 -14.33456 -14.20450 -13.92726 -13.80004 -13.73923 -13.45680 -13.22044 -12.97989 -12.92095 -12.72966 -12.71364 -12.19235 -12.03190 -11.96103 -11.57331 -11.39346 -11.34993 -10.52402 -10.32360 -10.20102 -9.95260 -9.75748 -8.54368 -8.47712 -6.53143 -0.37516 0.40225 0.62498 1.23267 1.26634 1.43350 1.59450 1.60820 1.64592 1.96750 2.20450 2.48883 2.55475 2.84002 2.91253 3.37070 3.52117 3.79454 3.99357 4.11587 4.14884 4.30709 4.44649 4.48132 4.54007 4.65079 4.76483 4.85054 4.93714 4.98066 5.01048 5.08785 5.20812 5.32689 5.33570 5.45343 5.57684 5.61388 5.82318 6.11086 6.25899 6.43422 6.79275 6.96565 8.43090 8.70078 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.040679 B = 0.002630 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.158590 B =10644.094385 C =10982.061136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 H 0.091 0.909 4 S 0.000 6.000 5 C 0.055 3.945 6 N -0.319 5.319 7 N -0.391 5.391 8 C 0.319 3.681 9 C -0.474 4.474 10 H 0.101 0.899 11 C 0.032 3.968 12 N -0.789 5.789 13 Si 1.003 2.997 14 H -0.261 1.261 15 H -0.249 1.249 16 H -0.272 1.272 17 N -0.522 5.522 18 C 0.094 3.906 19 C -0.039 4.039 20 C -0.108 4.108 21 C -0.057 4.057 22 C -0.037 4.037 23 C 0.283 3.717 24 N -0.466 5.466 25 C -0.058 4.058 26 C -0.106 4.106 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.284 0.716 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 -10.418 8.985 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 H 0.110 0.890 4 S 0.230 5.770 5 C -0.318 4.318 6 N -0.163 5.163 7 N -0.237 5.237 8 C 0.072 3.928 9 C -0.514 4.514 10 H 0.119 0.881 11 C -0.189 4.189 12 N -0.414 5.414 13 Si 0.822 3.178 14 H -0.186 1.186 15 H -0.172 1.172 16 H -0.197 1.197 17 N -0.224 5.224 18 C -0.049 4.049 19 C -0.042 4.042 20 C -0.128 4.128 21 C -0.077 4.077 22 C -0.042 4.042 23 C -0.032 4.032 24 N -0.142 5.142 25 C -0.078 4.078 26 C -0.126 4.126 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.164 0.836 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.715 -10.934 11.093 16.274 hybrid contribution -0.402 0.959 -1.814 2.091 sum 4.312 -9.974 9.279 14.289 Atomic orbital electron populations 1.22026 0.91632 1.03215 1.02940 1.22074 1.00057 1.01598 0.91619 0.89018 1.84325 1.70814 1.28505 0.93381 1.26452 1.13278 1.04057 0.88015 1.74357 1.14451 1.05166 1.22326 1.75288 1.29470 1.25392 0.93539 1.21992 0.91535 0.82954 0.96354 1.18569 1.40567 1.04347 0.87910 0.88124 1.26917 0.92606 0.94155 1.05244 1.70125 1.28011 1.05138 1.38144 0.84894 0.78580 0.79631 0.74701 1.18574 1.17212 1.19702 1.46395 1.48488 1.22831 1.04663 1.21831 0.97009 0.87805 0.98271 1.19563 0.96678 0.94675 0.93326 1.21131 1.00212 0.93460 0.97960 1.21314 0.93946 1.00762 0.91685 1.16082 1.03209 0.94076 0.90786 1.25846 0.92324 0.92447 0.92542 1.81291 1.10578 1.09954 1.12342 1.21312 0.97481 0.92027 0.97007 1.21146 0.96725 1.01250 0.93442 0.90564 0.90484 0.93366 0.90580 0.91011 0.88978 0.89476 0.83626 0.82656 0.82731 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 8.82 71.98 0.63 -3.30 16 2 C -0.02 -0.66 2.52 29.84 0.08 -0.58 16 3 H 0.09 2.81 7.87 -2.39 -0.02 2.80 16 4 S 0.00 0.00 20.85 -56.49 -1.18 -1.18 16 5 C 0.06 2.50 7.77 179.18 1.39 3.90 16 6 N -0.32 -16.96 9.74 -56.17 -0.55 -17.51 16 7 N -0.39 -23.57 10.56 -55.01 -0.58 -24.15 16 8 C 0.32 17.70 7.50 133.23 1.00 18.70 16 9 C -0.47 -24.84 9.05 23.09 0.21 -24.63 16 10 H 0.10 4.69 7.26 -2.92 -0.02 4.67 16 11 C 0.03 1.60 5.49 85.29 0.47 2.07 16 12 N -0.79 -43.99 12.00 21.85 0.26 -43.73 16 13 Si 1.00 37.18 29.57 68.60 2.03 39.21 16 14 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 15 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 16 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 17 N -0.52 -24.21 3.26 -543.61 -1.77 -25.99 16 18 C 0.09 3.12 10.89 127.77 1.39 4.51 16 19 C -0.04 -0.76 4.79 -19.81 -0.09 -0.86 16 20 C -0.11 -1.72 8.75 22.23 0.19 -1.52 16 21 C -0.06 -0.74 9.76 22.54 0.22 -0.52 16 22 C -0.04 -0.54 5.73 -21.36 -0.12 -0.66 16 23 C 0.28 5.09 15.33 88.33 1.35 6.45 16 24 N -0.47 -10.82 18.54 19.00 0.35 -10.47 16 25 C -0.06 -0.76 9.76 22.54 0.22 -0.54 16 26 C -0.11 -1.70 9.65 22.23 0.21 -1.48 16 27 H 0.08 1.84 7.36 -2.39 -0.02 1.82 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.84 5.89 -2.39 -0.01 1.82 16 30 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.09 2.56 7.85 -2.39 -0.02 2.54 16 33 H 0.09 2.73 7.48 -2.39 -0.02 2.71 16 34 H 0.15 2.14 7.55 -2.91 -0.02 2.11 16 35 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 36 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.15 2.08 7.94 -2.91 -0.02 2.06 16 Total: -1.00 -73.95 341.54 6.83 -67.11 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.11 Total: 15.17 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 7.16 Total: 1.52 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -2.28 Total: -121.84 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.18 Total: -1.18 kcal Total: -73.95 6.83 -67.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279989415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.300 kcal (2) G-P(sol) polarization free energy of solvation -73.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds