Wall clock time and date at job start Tue Mar 31 2020 10:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.47011 * 2 1 4 4 S 1.81007 * 109.47236 * 119.99448 * 2 1 3 5 5 C 1.76196 * 100.00153 * 295.00297 * 4 2 1 6 6 N 1.32391 * 126.25688 * 0.02562 * 5 4 2 7 7 N 1.28515 * 110.20151 * 180.02562 * 6 5 4 8 8 C 1.33104 * 109.74916 * 359.97438 * 7 6 5 9 9 C 1.39771 * 126.56620 * 179.74152 * 8 7 6 10 10 H 1.08001 * 119.99979 * 180.02562 * 9 8 7 11 11 C 1.40083 * 120.00227 * 0.02562 * 9 8 7 12 12 N 1.30818 * 119.99767 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00238 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46953 * 59.99876 * 13 11 9 15 15 H 1.48496 * 109.46999 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47045 * 299.99964 * 13 11 9 17 17 N 1.36673 * 126.25811 * 180.02562 * 5 4 2 18 18 C 1.46496 * 127.15182 * 0.02562 * 17 5 4 19 19 C 1.50699 * 109.47321 * 239.99771 * 2 1 3 20 20 C 1.38363 * 119.84694 * 299.72217 * 19 2 1 21 21 C 1.37945 * 120.15188 * 179.76584 * 20 19 2 22 22 C 1.39638 * 119.84369 * 0.50714 * 21 20 19 23 23 C 1.43200 * 120.14781 * 179.76846 * 22 21 20 24 24 N 6.84441 * 109.47930 * 239.99355 * 2 1 3 25 25 C 1.39630 * 119.70055 * 359.74810 * 22 21 20 26 26 C 1.37951 * 119.84633 * 359.97438 * 25 22 21 27 27 H 1.09006 * 109.47575 * 300.00137 * 1 2 3 28 28 H 1.08994 * 109.47499 * 60.00301 * 1 2 3 29 29 H 1.09004 * 109.47298 * 180.02562 * 1 2 3 30 30 H 0.96993 * 119.99881 * 180.02562 * 12 11 9 31 31 H 1.09001 * 109.46891 * 269.97466 * 18 17 5 32 32 H 1.08996 * 109.47385 * 29.97355 * 18 17 5 33 33 H 1.09000 * 109.47355 * 149.97527 * 18 17 5 34 34 H 1.08006 * 119.91963 * 0.02562 * 20 19 2 35 35 H 1.08002 * 120.07792 * 180.23296 * 21 20 19 36 36 H 1.07994 * 120.07403 * 179.97438 * 25 22 21 37 37 H 1.07994 * 119.92774 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 16 2.1333 -0.8531 1.4780 5 6 1.5439 0.2424 2.7257 6 7 0.8572 1.3569 2.5284 7 7 0.5859 1.9161 3.6533 8 6 1.0856 1.1883 4.6494 9 6 0.9994 1.4749 6.0147 10 1 1.4464 0.8068 6.7360 11 6 0.3333 2.6288 6.4475 12 7 -0.2086 3.4377 5.5739 13 14 0.2175 3.0115 8.2722 14 1 1.5841 3.1534 8.8359 15 1 -0.5313 4.2792 8.4655 16 1 -0.4917 1.9064 8.9657 17 7 1.7120 0.0969 4.0743 18 6 2.4110 -0.9884 4.7668 19 6 2.0323 -0.7104 -1.2304 20 6 1.7009 -2.0368 -1.4433 21 6 2.1533 -2.6919 -2.5698 22 6 2.9563 -2.0163 -3.4911 23 6 3.4336 -2.6914 -4.6602 24 7 3.8123 -3.2270 -5.5878 25 6 3.2913 -0.6793 -3.2673 26 6 2.8272 -0.0348 -2.1394 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.6694 4.2368 5.8735 31 1 1.7065 -1.7895 4.9909 32 1 3.2073 -1.3727 4.1294 33 1 2.8391 -0.6107 5.6953 34 1 1.0831 -2.5592 -0.7278 35 1 1.8908 -3.7261 -2.7367 36 1 3.9122 -0.1512 -3.9756 37 1 3.0851 0.9993 -1.9652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279989418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:10 Heat of formation + Delta-G solvation = 119.125219 kcal Electronic energy + Delta-G solvation = -21910.001599 eV Core-core repulsion = 18586.657110 eV Total energy + Delta-G solvation = -3323.344489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56106 -39.83228 -36.82655 -34.31338 -33.71318 -33.31007 -31.36813 -30.06842 -29.17868 -26.52992 -25.56384 -24.80783 -23.03894 -21.77762 -20.87162 -20.43543 -19.15571 -17.43288 -16.69796 -16.12001 -15.52672 -15.17847 -14.82808 -14.76300 -14.57871 -14.29406 -13.98012 -13.69351 -13.51289 -13.30893 -13.18599 -12.85613 -12.50209 -12.35125 -12.22856 -12.10124 -11.73345 -11.43327 -11.34056 -11.22937 -11.06887 -10.93047 -10.44088 -10.10935 -9.72445 -9.64114 -9.27441 -8.94862 -8.74591 -8.48122 -8.42524 -6.91006 -6.69248 -4.61982 0.43969 1.09784 1.96533 2.41628 2.64353 2.82889 2.89423 3.03515 3.05467 3.31290 3.62891 3.65970 3.83600 4.18998 4.36589 4.47853 4.57780 4.62323 5.09906 5.12064 5.27622 5.31602 5.39211 5.50494 5.58662 5.74278 5.84323 5.89592 6.00283 6.01881 6.03124 6.12468 6.36542 6.53893 6.61150 6.74593 6.87658 7.20314 7.22747 7.43736 7.84725 8.13025 8.65700 8.80827 10.23096 10.58461 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.040807 B = 0.002629 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.984804 B =10646.638290 C =10987.276528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 H 0.108 0.892 4 S -0.045 6.045 5 C 0.045 3.955 6 N -0.282 5.282 7 N -0.333 5.333 8 C 0.347 3.653 9 C -0.447 4.447 10 H 0.083 0.917 11 C 0.078 3.922 12 N -0.736 5.736 13 Si 0.920 3.080 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.265 1.265 17 N -0.515 5.515 18 C 0.101 3.899 19 C -0.028 4.028 20 C -0.107 4.107 21 C -0.067 4.067 22 C -0.038 4.038 23 C 0.260 3.740 24 N -0.426 5.426 25 C -0.068 4.068 26 C -0.105 4.105 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.280 0.720 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 -8.146 -8.755 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 H 0.126 0.874 4 S 0.185 5.815 5 C -0.327 4.327 6 N -0.128 5.128 7 N -0.181 5.181 8 C 0.103 3.897 9 C -0.487 4.487 10 H 0.101 0.899 11 C -0.147 4.147 12 N -0.360 5.360 13 Si 0.744 3.256 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.190 1.190 17 N -0.218 5.218 18 C -0.044 4.044 19 C -0.031 4.031 20 C -0.126 4.126 21 C -0.088 4.088 22 C -0.042 4.042 23 C -0.055 4.055 24 N -0.101 5.101 25 C -0.088 4.088 26 C -0.125 4.125 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.288 -8.654 -10.860 14.533 hybrid contribution -0.152 0.492 1.988 2.054 sum 4.136 -8.162 -8.872 12.745 Atomic orbital electron populations 1.22124 0.91246 1.02578 1.04358 1.22058 1.00321 1.02148 0.91260 0.87380 1.84530 1.71760 1.30417 0.94744 1.25290 1.16225 1.04658 0.86531 1.74458 1.12061 1.03335 1.22976 1.75470 1.27302 1.23209 0.92115 1.21605 0.90431 0.81832 0.95829 1.18069 1.34563 1.08083 0.87969 0.89858 1.25791 0.93797 0.95075 1.00068 1.69992 1.21859 1.08780 1.35351 0.86180 0.79338 0.78562 0.81497 1.18973 1.20067 1.18956 1.46031 1.48834 1.22559 1.04327 1.21490 0.96158 0.89044 0.97670 1.19770 0.95043 0.93955 0.94283 1.21073 1.00158 0.94045 0.97305 1.21138 0.95089 0.99879 0.92666 1.16008 1.03058 0.93860 0.91266 1.25767 0.93413 0.93402 0.92959 1.81252 1.09169 1.08647 1.11057 1.21129 0.98096 0.92299 0.97298 1.21047 0.97125 1.00782 0.93520 0.88900 0.92208 0.92294 0.90891 0.92553 0.91557 0.90378 0.84239 0.84885 0.84873 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.82 37.16 0.33 -1.75 16 2 C -0.03 -0.40 2.52 -27.89 -0.07 -0.47 16 3 H 0.11 1.64 7.87 -51.91 -0.41 1.23 16 4 S -0.04 -0.73 20.83 -107.50 -2.24 -2.96 16 5 C 0.04 0.99 7.77 -87.27 -0.68 0.32 16 6 N -0.28 -7.19 9.74 30.89 0.30 -6.89 16 7 N -0.33 -9.57 10.48 31.26 0.33 -9.24 16 8 C 0.35 9.33 7.53 -154.80 -1.17 8.16 16 9 C -0.45 -11.45 9.04 -38.32 -0.35 -11.80 16 10 H 0.08 1.93 7.30 -52.49 -0.38 1.55 16 11 C 0.08 1.95 5.50 -17.29 -0.10 1.85 16 12 N -0.74 -19.63 11.94 55.56 0.66 -18.97 16 13 Si 0.92 18.01 29.56 -169.99 -5.03 12.98 16 14 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 15 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 17 N -0.52 -11.85 3.26 -123.18 -0.40 -12.25 16 18 C 0.10 1.76 10.88 59.84 0.65 2.41 16 19 C -0.03 -0.30 4.79 -104.53 -0.50 -0.80 16 20 C -0.11 -1.01 8.74 -39.64 -0.35 -1.36 16 21 C -0.07 -0.56 9.76 -39.17 -0.38 -0.94 16 22 C -0.04 -0.33 5.73 -106.93 -0.61 -0.95 16 23 C 0.26 2.67 15.33 -22.47 -0.34 2.33 16 24 N -0.43 -5.33 18.54 41.84 0.78 -4.55 16 25 C -0.07 -0.55 9.76 -39.17 -0.38 -0.93 16 26 C -0.11 -0.97 9.65 -39.64 -0.38 -1.35 16 27 H 0.09 1.73 5.89 -51.93 -0.31 1.42 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.75 7.39 -51.93 -0.38 0.37 16 30 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 33 H 0.08 1.28 7.52 -51.93 -0.39 0.89 16 34 H 0.14 1.26 7.57 -52.48 -0.40 0.86 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.14 1.11 7.94 -52.49 -0.42 0.70 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -31.87 341.50 -8.70 -40.57 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -3.92 Total: 1.44 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -4.33 Total: -5.27 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 1.67 Total: -51.90 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.24 Total: -2.96 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.87 -8.70 -40.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279989418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.698 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds