Wall clock time and date at job start Tue Mar 31 2020 10:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.47011 * 2 1 4 4 S 1.81007 * 109.47236 * 119.99448 * 2 1 3 5 5 C 1.76196 * 100.00153 * 295.00297 * 4 2 1 6 6 N 1.32391 * 126.25688 * 0.02562 * 5 4 2 7 7 N 1.28515 * 110.20151 * 180.02562 * 6 5 4 8 8 C 1.33104 * 109.74916 * 359.97438 * 7 6 5 9 9 C 1.39771 * 126.56620 * 179.74152 * 8 7 6 10 10 H 1.08001 * 119.99979 * 180.02562 * 9 8 7 11 11 C 1.40083 * 120.00227 * 0.02562 * 9 8 7 12 12 N 1.30818 * 119.99767 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00238 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46953 * 59.99876 * 13 11 9 15 15 H 1.48496 * 109.46999 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47045 * 299.99964 * 13 11 9 17 17 N 1.36673 * 126.25811 * 180.02562 * 5 4 2 18 18 C 1.46496 * 127.15182 * 0.02562 * 17 5 4 19 19 C 1.50699 * 109.47321 * 239.99771 * 2 1 3 20 20 C 1.38363 * 119.84694 * 299.72217 * 19 2 1 21 21 C 1.37945 * 120.15188 * 179.76584 * 20 19 2 22 22 C 1.39638 * 119.84369 * 0.50714 * 21 20 19 23 23 C 1.43200 * 120.14781 * 179.76846 * 22 21 20 24 24 N 6.84441 * 109.47930 * 239.99355 * 2 1 3 25 25 C 1.39630 * 119.70055 * 359.74810 * 22 21 20 26 26 C 1.37951 * 119.84633 * 359.97438 * 25 22 21 27 27 H 1.09006 * 109.47575 * 300.00137 * 1 2 3 28 28 H 1.08994 * 109.47499 * 60.00301 * 1 2 3 29 29 H 1.09004 * 109.47298 * 180.02562 * 1 2 3 30 30 H 0.96993 * 119.99881 * 180.02562 * 12 11 9 31 31 H 1.09001 * 109.46891 * 269.97466 * 18 17 5 32 32 H 1.08996 * 109.47385 * 29.97355 * 18 17 5 33 33 H 1.09000 * 109.47355 * 149.97527 * 18 17 5 34 34 H 1.08006 * 119.91963 * 0.02562 * 20 19 2 35 35 H 1.08002 * 120.07792 * 180.23296 * 21 20 19 36 36 H 1.07994 * 120.07403 * 179.97438 * 25 22 21 37 37 H 1.07994 * 119.92774 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 16 2.1333 -0.8531 1.4780 5 6 1.5439 0.2424 2.7257 6 7 0.8572 1.3569 2.5284 7 7 0.5859 1.9161 3.6533 8 6 1.0856 1.1883 4.6494 9 6 0.9994 1.4749 6.0147 10 1 1.4464 0.8068 6.7360 11 6 0.3333 2.6288 6.4475 12 7 -0.2086 3.4377 5.5739 13 14 0.2175 3.0115 8.2722 14 1 1.5841 3.1534 8.8359 15 1 -0.5313 4.2792 8.4655 16 1 -0.4917 1.9064 8.9657 17 7 1.7120 0.0969 4.0743 18 6 2.4110 -0.9884 4.7668 19 6 2.0323 -0.7104 -1.2304 20 6 1.7009 -2.0368 -1.4433 21 6 2.1533 -2.6919 -2.5698 22 6 2.9563 -2.0163 -3.4911 23 6 3.4336 -2.6914 -4.6602 24 7 3.8123 -3.2270 -5.5878 25 6 3.2913 -0.6793 -3.2673 26 6 2.8272 -0.0348 -2.1394 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.6694 4.2368 5.8735 31 1 1.7065 -1.7895 4.9909 32 1 3.2073 -1.3727 4.1294 33 1 2.8391 -0.6107 5.6953 34 1 1.0831 -2.5592 -0.7278 35 1 1.8908 -3.7261 -2.7367 36 1 3.9122 -0.1512 -3.9756 37 1 3.0851 0.9993 -1.9652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279989418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:09 Heat of formation + Delta-G solvation = 102.687856 kcal Electronic energy + Delta-G solvation = -21910.714377 eV Core-core repulsion = 18586.657110 eV Total energy + Delta-G solvation = -3324.057267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.39460 -40.59757 -37.70728 -35.63513 -35.33488 -34.91711 -32.06827 -31.42289 -30.63775 -28.16729 -27.34538 -25.77591 -23.76511 -22.90956 -22.70516 -22.05145 -19.89735 -19.21771 -18.09254 -17.27007 -16.98956 -16.48326 -16.26236 -15.99992 -15.57379 -15.41960 -15.07211 -14.92514 -14.56144 -14.33581 -14.20053 -13.93392 -13.79316 -13.73898 -13.46554 -13.20540 -12.95120 -12.91975 -12.73497 -12.72089 -12.19533 -12.03551 -11.97608 -11.56053 -11.38309 -11.36797 -10.51722 -10.29085 -10.21354 -9.95237 -9.75723 -8.51386 -8.48272 -6.53582 -0.37411 0.40198 0.62696 1.24478 1.26881 1.43339 1.57917 1.60877 1.65641 1.96799 2.20710 2.49901 2.55878 2.83989 2.91271 3.37922 3.52182 3.79499 3.99346 4.11587 4.14880 4.30605 4.44787 4.48407 4.54044 4.65204 4.76488 4.85006 4.93749 4.97948 5.00900 5.08838 5.20839 5.32762 5.33710 5.45553 5.57686 5.61665 5.82333 6.11556 6.25518 6.43443 6.79532 6.96903 8.43966 8.71006 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.040807 B = 0.002629 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.984804 B =10646.638290 C =10987.276528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 H 0.092 0.908 4 S 0.000 6.000 5 C 0.055 3.945 6 N -0.319 5.319 7 N -0.389 5.389 8 C 0.317 3.683 9 C -0.473 4.473 10 H 0.101 0.899 11 C 0.030 3.970 12 N -0.787 5.787 13 Si 1.004 2.996 14 H -0.255 1.255 15 H -0.273 1.273 16 H -0.255 1.255 17 N -0.523 5.523 18 C 0.094 3.906 19 C -0.039 4.039 20 C -0.109 4.109 21 C -0.057 4.057 22 C -0.037 4.037 23 C 0.283 3.717 24 N -0.466 5.466 25 C -0.058 4.058 26 C -0.106 4.106 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.284 0.716 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 -10.002 -8.983 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 H 0.110 0.890 4 S 0.229 5.771 5 C -0.318 4.318 6 N -0.163 5.163 7 N -0.235 5.235 8 C 0.070 3.930 9 C -0.513 4.513 10 H 0.119 0.881 11 C -0.191 4.191 12 N -0.412 5.412 13 Si 0.823 3.177 14 H -0.179 1.179 15 H -0.198 1.198 16 H -0.179 1.179 17 N -0.224 5.224 18 C -0.049 4.049 19 C -0.042 4.042 20 C -0.128 4.128 21 C -0.077 4.077 22 C -0.042 4.042 23 C -0.032 4.032 24 N -0.142 5.142 25 C -0.078 4.078 26 C -0.125 4.125 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.406 -10.530 -11.092 16.221 hybrid contribution -0.424 0.920 1.827 2.089 sum 4.983 -9.609 -9.265 14.248 Atomic orbital electron populations 1.22023 0.91685 1.03179 1.02929 1.22073 1.00017 1.01626 0.91610 0.88964 1.84321 1.70828 1.28523 0.93383 1.26451 1.13096 1.04232 0.88044 1.74371 1.14379 1.05215 1.22384 1.75332 1.29352 1.25382 0.93434 1.21999 0.91475 0.83158 0.96374 1.18554 1.35483 1.09173 0.88062 0.88124 1.26932 0.92579 0.94301 1.05302 1.70144 1.23327 1.09641 1.38129 0.84946 0.79730 0.78452 0.74615 1.17863 1.19755 1.17858 1.46385 1.48473 1.22854 1.04705 1.21829 0.96905 0.87986 0.98208 1.19567 0.96685 0.94626 0.93354 1.21130 1.00286 0.93461 0.97919 1.21312 0.93984 1.00782 0.91633 1.16083 1.03177 0.94091 0.90800 1.25846 0.92329 0.92446 0.92535 1.81289 1.10579 1.09957 1.12340 1.21313 0.97487 0.92002 0.97011 1.21147 0.96655 1.01275 0.93458 0.93393 0.90474 0.90631 0.90619 0.90826 0.89098 0.89548 0.83679 0.82675 0.82711 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.82 71.98 0.64 -3.34 16 2 C -0.02 -0.65 2.52 29.85 0.08 -0.58 16 3 H 0.09 2.82 7.87 -2.39 -0.02 2.80 16 4 S 0.00 -0.01 20.83 -56.49 -1.18 -1.18 16 5 C 0.06 2.50 7.77 179.18 1.39 3.89 16 6 N -0.32 -17.00 9.74 -56.17 -0.55 -17.55 16 7 N -0.39 -23.47 10.48 -55.02 -0.58 -24.05 16 8 C 0.32 17.61 7.53 133.23 1.00 18.61 16 9 C -0.47 -24.77 9.04 23.09 0.21 -24.56 16 10 H 0.10 4.67 7.30 -2.91 -0.02 4.65 16 11 C 0.03 1.50 5.50 85.29 0.47 1.97 16 12 N -0.79 -43.91 11.94 21.86 0.26 -43.65 16 13 Si 1.00 37.14 29.56 68.60 2.03 39.16 16 14 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 15 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 16 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 17 N -0.52 -24.23 3.26 -543.63 -1.77 -26.00 16 18 C 0.09 3.12 10.88 127.77 1.39 4.51 16 19 C -0.04 -0.76 4.79 -19.80 -0.09 -0.86 16 20 C -0.11 -1.74 8.74 22.23 0.19 -1.54 16 21 C -0.06 -0.74 9.76 22.54 0.22 -0.52 16 22 C -0.04 -0.54 5.73 -21.36 -0.12 -0.66 16 23 C 0.28 5.09 15.33 88.33 1.35 6.45 16 24 N -0.47 -10.82 18.54 19.00 0.35 -10.47 16 25 C -0.06 -0.76 9.76 22.54 0.22 -0.54 16 26 C -0.11 -1.68 9.65 22.23 0.21 -1.47 16 27 H 0.05 1.84 5.89 -2.38 -0.01 1.83 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.85 7.39 -2.38 -0.02 1.83 16 30 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.09 2.55 7.85 -2.39 -0.02 2.53 16 33 H 0.09 2.72 7.52 -2.39 -0.02 2.70 16 34 H 0.15 2.16 7.57 -2.91 -0.02 2.14 16 35 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.15 2.06 7.94 -2.91 -0.02 2.04 16 Total: -1.00 -73.88 341.50 6.84 -67.04 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.11 Total: 15.33 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 7.16 Total: 1.36 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -2.28 Total: -121.72 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.18 Total: -1.18 kcal Total: -73.88 6.84 -67.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279989418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.729 kcal (2) G-P(sol) polarization free energy of solvation -73.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds