Wall clock time and date at job start Tue Mar 31 2020 10:17:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50704 * 120.00019 * 2 1
4 4 N 1.46497 * 109.47170 * 126.15715 * 3 2 1
5 5 C 1.46502 * 119.99817 * 277.14505 * 4 3 2
6 6 C 1.50702 * 109.46814 * 269.99853 * 5 4 3
7 7 H 1.07997 * 120.00559 * 0.02562 * 6 5 4
8 8 C 1.37878 * 119.99648 * 180.02562 * 6 5 4
9 9 N 1.31511 * 120.00201 * 359.97438 * 8 6 5
10 10 Si 1.86803 * 119.99785 * 180.02562 * 8 6 5
11 11 H 1.48493 * 109.47315 * 59.99632 * 10 8 6
12 12 H 1.48503 * 109.47037 * 179.97438 * 10 8 6
13 13 H 1.48496 * 109.46810 * 299.99513 * 10 8 6
14 14 C 1.34781 * 120.00214 * 97.14426 * 4 3 2
15 15 O 1.21552 * 120.00045 * 185.51796 * 14 4 3
16 16 C 1.47835 * 119.99647 * 5.52075 * 14 4 3
17 17 C 1.40029 * 120.56068 * 312.07452 * 16 14 4
18 18 C 1.38356 * 118.29021 * 179.72398 * 17 16 14
19 19 C 1.38358 * 119.30297 * 0.26082 * 18 17 16
20 20 C 1.50694 * 119.46029 * 179.97438 * 19 18 17
21 21 F 1.39901 * 109.47716 * 89.99416 * 20 19 18
22 22 F 1.39897 * 109.47217 * 209.99890 * 20 19 18
23 23 F 1.39903 * 109.47105 * 329.99055 * 20 19 18
24 24 N 1.31927 * 121.07892 * 0.02562 * 19 18 17
25 25 C 1.31695 * 121.87768 * 359.97438 * 24 19 18
26 26 H 1.07998 * 119.99929 * 0.02562 * 1 2 3
27 27 H 1.07999 * 120.00457 * 180.02562 * 1 2 3
28 28 H 1.07998 * 119.99929 * 179.97438 * 2 1 3
29 29 H 1.08994 * 109.46961 * 6.15592 * 3 2 1
30 30 H 1.09005 * 109.46600 * 246.15668 * 3 2 1
31 31 H 1.08997 * 109.47282 * 30.00207 * 5 4 3
32 32 H 1.09004 * 109.46816 * 150.00234 * 5 4 3
33 33 H 0.97003 * 119.99928 * 180.02562 * 9 8 6
34 34 H 1.07993 * 120.85345 * 0.02562 * 17 16 14
35 35 H 1.07997 * 120.34830 * 180.22491 * 18 17 16
36 36 H 1.08001 * 119.71389 * 180.02562 * 25 24 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 3.0134 1.3206 1.1152
5 6 2.5606 1.6922 2.4580
6 6 2.7062 3.1807 2.6432
7 1 3.0966 3.7891 1.8409
8 6 2.3411 3.7657 3.8371
9 7 1.8652 3.0250 4.8140
10 14 2.5210 5.6109 4.0664
11 1 1.6973 6.3183 3.0535
12 1 2.0621 5.9876 5.4276
13 1 3.9461 5.9936 3.9005
14 6 4.3039 0.9929 0.9058
15 8 5.0697 0.9081 1.8460
16 6 4.7881 0.7369 -0.4673
17 6 4.0752 -0.1070 -1.3279
18 6 4.5678 -0.3091 -2.6048
19 6 5.7406 0.3185 -2.9854
20 6 6.2807 0.1004 -4.3752
21 9 5.7537 1.0678 -5.2376
22 9 7.6757 0.2039 -4.3550
23 9 5.9142 -1.1732 -4.8234
24 7 6.3944 1.1040 -2.1511
25 6 5.9660 1.3275 -0.9260
26 1 -0.5400 0.9353 -0.0004
27 1 -0.5401 -0.9353 0.0004
28 1 1.8500 -0.9353 0.0004
29 1 1.3604 2.1306 0.1102
30 1 2.6049 1.4120 -0.9400
31 1 1.5143 1.4116 2.5792
32 1 3.1647 1.1726 3.2018
33 1 1.6080 3.4367 5.6538
34 1 3.1617 -0.5838 -1.0047
35 1 4.0427 -0.9505 -3.2971
36 1 6.5287 1.9774 -0.2722
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000292525960.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:17:50
Heat of formation + Delta-G solvation = -114.699531 kcal
Electronic energy + Delta-G solvation = -25772.086468 eV
Core-core repulsion = 21421.700214 eV
Total energy + Delta-G solvation = -4350.386254 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 314.098 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-50.37784 -47.92818 -47.80683 -40.90356 -38.86935 -36.05016 -33.54833 -32.96236
-32.40999 -32.11959 -28.10341 -27.01532 -25.65478 -24.28410 -23.46871 -22.47325
-20.41224 -19.19652 -18.91076 -18.75394 -18.66866 -17.16637 -16.66495 -16.60218
-15.87806 -15.25671 -14.89918 -14.80853 -14.75148 -14.59910 -14.35667 -14.28064
-14.05949 -13.98752 -13.96952 -13.89984 -13.43474 -12.81445 -12.76876 -12.30331
-12.12642 -11.91518 -11.40254 -11.24267 -11.00762 -10.69934 -10.32572 -10.23517
-10.14861 -9.80711 -9.63868 -9.36140 -9.23341 -8.52703 -7.94240 -6.14443
-4.20420 0.24469 0.83328 2.20612 2.24987 2.87288 3.24998 3.26323
3.31292 3.31653 3.37696 3.63838 3.72236 4.15707 4.35035 4.36180
4.51462 4.55438 4.65117 4.85424 5.04002 5.15688 5.20538 5.29981
5.39237 5.51504 5.73207 5.85395 6.01565 6.11589 6.60328 6.70774
6.87981 7.25558 7.32679 7.34781 7.80304 8.08628 8.10628 8.62467
8.85025 9.45206 10.93664
Molecular weight = 314.10amu
Principal moments of inertia in cm(-1)
A = 0.018285 B = 0.003536 C = 0.003235
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1530.983000 B = 7915.980782 C = 8654.170249
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.181 4.181
3 C 0.126 3.874
4 N -0.579 5.579
5 C 0.247 3.753
6 C -0.534 4.534
7 H 0.058 0.942
8 C 0.065 3.935
9 N -0.892 5.892
10 Si 0.899 3.101
11 H -0.276 1.276
12 H -0.285 1.285
13 H -0.275 1.275
14 C 0.548 3.452
15 O -0.521 6.521
16 C -0.130 4.130
17 C -0.057 4.057
18 C -0.128 4.128
19 C 0.040 3.960
20 C 0.524 3.476
21 F -0.171 7.171
22 F -0.164 7.164
23 F -0.172 7.172
24 N -0.445 5.445
25 C 0.152 3.848
26 H 0.102 0.898
27 H 0.098 0.902
28 H 0.108 0.892
29 H 0.091 0.909
30 H 0.078 0.922
31 H 0.038 0.962
32 H 0.048 0.952
33 H 0.265 0.735
34 H 0.162 0.838
35 H 0.153 0.847
36 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.264 -7.981 -17.663 19.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.200 4.200
3 C 0.003 3.997
4 N -0.309 5.309
5 C 0.128 3.872
6 C -0.573 4.573
7 H 0.076 0.924
8 C -0.138 4.138
9 N -0.530 5.530
10 Si 0.726 3.274
11 H -0.202 1.202
12 H -0.211 1.211
13 H -0.201 1.201
14 C 0.332 3.668
15 O -0.398 6.398
16 C -0.136 4.136
17 C -0.083 4.083
18 C -0.148 4.148
19 C -0.099 4.099
20 C 0.469 3.531
21 F -0.152 7.152
22 F -0.145 7.145
23 F -0.153 7.153
24 N -0.152 5.152
25 C -0.007 4.007
26 H 0.120 0.880
27 H 0.116 0.884
28 H 0.126 0.874
29 H 0.109 0.891
30 H 0.096 0.904
31 H 0.056 0.944
32 H 0.066 0.934
33 H 0.075 0.925
34 H 0.179 0.821
35 H 0.170 0.830
36 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges 2.373 -7.598 -17.247 18.996
hybrid contribution -0.703 0.562 0.238 0.931
sum 1.670 -7.036 -17.010 18.483
Atomic orbital electron populations
1.23880 0.95718 1.02127 0.98783 1.23375 0.96528 0.98559 1.01541
1.20806 0.92954 0.95846 0.90128 1.48213 1.06511 1.64305 1.11874
1.19387 0.95709 0.95830 0.76243 1.21357 1.43741 0.92327 0.99853
0.92374 1.24916 0.94840 0.98553 0.95521 1.69916 1.42727 1.35707
1.04672 0.86548 0.78710 0.84863 0.77271 1.20194 1.21093 1.20066
1.17894 0.83216 0.78890 0.86756 1.90817 1.54863 1.51499 1.42640
1.21623 0.96811 0.98391 0.96729 1.22293 0.99277 0.94868 0.91875
1.21768 0.95460 0.99790 0.97771 1.21044 0.95238 0.99547 0.94118
1.17856 0.76142 0.74032 0.85082 1.93242 1.86367 1.63456 1.72132
1.93237 1.28884 1.95666 1.96714 1.93207 1.91486 1.40218 1.90434
1.67242 1.31325 1.12950 1.03732 1.22962 0.91869 0.95555 0.90271
0.88010 0.88417 0.87434 0.89081 0.90435 0.94446 0.93426 0.92502
0.82121 0.82967 0.80355
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.87 14.32 29.01 0.42 -1.45 16
2 C -0.18 -2.22 8.53 -36.02 -0.31 -2.52 16
3 C 0.13 1.85 5.35 -5.19 -0.03 1.83 16
4 N -0.58 -11.26 2.45 -177.55 -0.43 -11.69 16
5 C 0.25 6.05 5.21 -5.19 -0.03 6.02 16
6 C -0.53 -14.35 9.39 -34.44 -0.32 -14.67 16
7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16
8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
9 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16
10 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16
11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
13 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16
14 C 0.55 10.61 7.27 -12.33 -0.09 10.52 16
15 O -0.52 -12.31 16.58 5.32 0.09 -12.22 16
16 C -0.13 -1.94 4.99 -104.82 -0.52 -2.46 16
17 C -0.06 -0.66 7.61 -38.87 -0.30 -0.95 16
18 C -0.13 -1.30 9.42 -39.49 -0.37 -1.67 16
19 C 0.04 0.48 6.30 -82.51 -0.52 -0.04 16
20 C 0.52 5.87 3.43 36.00 0.12 6.00 16
21 F -0.17 -1.94 17.30 2.25 0.04 -1.90 16
22 F -0.16 -2.03 17.03 2.25 0.04 -1.99 16
23 F -0.17 -1.71 16.43 2.25 0.04 -1.67 16
24 N -0.44 -6.24 9.94 -9.14 -0.09 -6.33 16
25 C 0.15 2.20 10.89 -17.13 -0.19 2.01 16
26 H 0.10 1.13 7.84 -52.49 -0.41 0.72 16
27 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16
28 H 0.11 1.18 6.54 -52.49 -0.34 0.84 16
29 H 0.09 1.40 7.78 -51.93 -0.40 1.00 16
30 H 0.08 0.98 5.25 -51.93 -0.27 0.70 16
31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16
32 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16
33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16
34 H 0.16 1.59 4.16 -52.49 -0.22 1.37 16
35 H 0.15 1.07 7.59 -52.49 -0.40 0.67 16
36 H 0.18 2.48 8.06 -52.49 -0.42 2.06 16
LS Contribution 328.84 15.07 4.96 4.96
Total: -1.00 -31.06 328.84 -5.12 -36.18
By element:
Atomic # 1 Polarization: 2.36 SS G_CDS: -3.24 Total: -0.88 kcal
Atomic # 6 Polarization: 6.51 SS G_CDS: -2.23 Total: 4.28 kcal
Atomic # 7 Polarization: -43.02 SS G_CDS: 0.21 Total: -42.81 kcal
Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal
Atomic # 9 Polarization: -5.67 SS G_CDS: 0.11 Total: -5.56 kcal
Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal
Total LS contribution 4.96 Total: 4.96 kcal
Total: -31.06 -5.12 -36.18 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000292525960.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.523 kcal
(2) G-P(sol) polarization free energy of solvation -31.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.578 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.700 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds