Wall clock time and date at job start Tue Mar 31 2020 10:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46699 * 2 1 4 4 C 1.36936 * 120.00263 * 88.93211 * 3 2 1 5 5 H 1.08001 * 119.99585 * 222.21930 * 4 3 2 6 6 C 1.38811 * 119.99890 * 42.22327 * 4 3 2 7 7 N 1.31617 * 119.99365 * 211.59181 * 6 4 3 8 8 Si 1.86797 * 120.00068 * 31.59349 * 6 4 3 9 9 H 1.48500 * 109.47242 * 93.89313 * 8 6 4 10 10 H 1.48501 * 109.46945 * 213.89201 * 8 6 4 11 11 H 1.48503 * 109.47452 * 333.89175 * 8 6 4 12 12 C 1.46503 * 119.99630 * 268.92774 * 3 2 1 13 13 H 1.09000 * 109.46998 * 174.30861 * 12 3 2 14 14 C 1.52999 * 109.47172 * 54.30940 * 12 3 2 15 15 C 1.50703 * 109.47222 * 294.30875 * 12 3 2 16 16 O 1.21287 * 119.99910 * 15.73470 * 15 12 3 17 17 N 1.34781 * 119.99815 * 195.74083 * 15 12 3 18 18 C 1.40040 * 119.99749 * 184.75616 * 17 15 12 19 19 C 1.38805 * 120.06917 * 332.18548 * 18 17 15 20 20 C 1.38245 * 119.93808 * 179.74628 * 19 18 17 21 21 Cl 1.73607 * 119.95745 * 180.27881 * 20 19 18 22 22 C 1.38396 * 120.08799 * 0.50942 * 20 19 18 23 23 C 1.38255 * 120.14210 * 359.76620 * 22 20 19 24 24 C 1.38305 * 120.05796 * 359.97438 * 23 22 20 25 25 F 1.35102 * 120.04482 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.46886 * 295.56471 * 1 2 3 27 27 H 1.08996 * 109.47362 * 55.56437 * 1 2 3 28 28 H 1.09004 * 109.46911 * 175.56847 * 1 2 3 29 29 H 1.09003 * 109.46987 * 119.99542 * 2 1 3 30 30 H 1.08997 * 109.47249 * 239.99994 * 2 1 3 31 31 H 0.97007 * 119.99645 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47094 * 299.99861 * 14 12 3 33 33 H 1.08997 * 109.47288 * 60.00016 * 14 12 3 34 34 H 1.09002 * 109.47338 * 180.02562 * 14 12 3 35 35 H 0.96995 * 119.99728 * 4.74590 * 17 15 12 36 36 H 1.07992 * 120.03171 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.92999 * 179.74051 * 22 20 19 38 38 H 1.08004 * 119.97167 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2257 2.0342 1.1857 5 1 1.9209 3.0645 1.2951 6 6 2.8276 1.3719 2.2467 7 7 2.5034 1.6809 3.4843 8 14 4.0976 0.0421 1.9181 9 1 5.4575 0.6376 1.9499 10 1 3.9935 -1.0103 2.9607 11 1 3.8513 -0.5585 0.5824 12 6 2.2848 2.0639 -1.2686 13 1 2.5409 3.1054 -1.0739 14 6 1.0377 2.0021 -2.1528 15 6 3.4331 1.3871 -1.9717 16 8 3.7894 0.2809 -1.6248 17 7 4.0643 2.0113 -2.9859 18 6 5.0645 1.3444 -3.7043 19 6 5.8105 0.3455 -3.0941 20 6 6.7937 -0.3147 -3.8073 21 17 7.7220 -1.5691 -3.0468 22 6 7.0421 0.0264 -5.1254 23 6 6.3051 1.0248 -5.7349 24 6 5.3164 1.6854 -5.0286 25 9 4.5967 2.6613 -5.6243 26 1 -0.3633 0.4435 0.9271 27 1 -0.3634 0.5811 -0.8475 28 1 -0.3633 -1.0246 -0.0794 29 1 1.8934 -0.5138 0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 2.9242 1.2183 4.2259 32 1 0.7815 0.9607 -2.3474 33 1 0.2071 2.4916 -1.6443 34 1 1.2361 2.5096 -3.0968 35 1 3.8256 2.9222 -3.2183 36 1 5.6199 0.0811 -2.0645 37 1 7.8136 -0.4881 -5.6789 38 1 6.5015 1.2890 -6.7635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298281676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:18 Heat of formation + Delta-G solvation = -29.933486 kcal Electronic energy + Delta-G solvation = -24511.261190 eV Core-core repulsion = 20716.347348 eV Total energy + Delta-G solvation = -3794.913842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 4.28 seconds Orbital eigenvalues (eV) -49.06556 -40.40317 -38.63786 -36.62397 -36.07380 -34.55570 -32.31178 -31.18797 -30.51778 -29.39548 -28.80650 -24.54796 -23.82018 -23.00736 -22.36615 -21.29804 -19.67719 -18.22404 -17.42110 -17.03338 -16.63501 -16.06823 -15.71592 -15.49719 -15.16373 -14.76677 -14.20824 -14.10250 -13.84869 -13.45549 -13.34587 -13.09126 -12.65044 -12.50682 -12.27472 -12.12905 -11.94240 -11.88669 -11.58777 -11.43486 -11.24678 -11.06864 -10.69335 -10.49121 -10.42483 -10.15995 -9.80657 -9.57668 -9.01187 -8.81333 -8.49021 -8.16417 -6.83590 -6.14405 -3.52974 0.78777 1.00000 1.99509 2.90636 3.09106 3.41546 3.43816 3.56868 3.78690 3.99368 4.48307 4.57687 4.82645 4.86668 4.96330 5.13409 5.23299 5.27269 5.57593 5.67272 5.72065 5.79897 5.91931 6.00237 6.12657 6.15071 6.22035 6.29333 6.40425 6.44783 6.59286 6.70576 6.79650 7.01299 7.23788 7.48371 7.97061 8.29717 8.46685 8.91938 9.62414 10.05653 10.98928 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.005153 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.903673 B = 5432.614877 C = 6702.942349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.146 3.854 3 N -0.568 5.568 4 C -0.292 4.292 5 H 0.076 0.924 6 C 0.059 3.941 7 N -0.876 5.876 8 Si 0.835 3.165 9 H -0.293 1.293 10 H -0.298 1.298 11 H -0.223 1.223 12 C 0.154 3.846 13 H 0.096 0.904 14 C -0.154 4.154 15 C 0.488 3.512 16 O -0.500 6.500 17 N -0.677 5.677 18 C 0.146 3.854 19 C -0.106 4.106 20 C -0.023 4.023 21 Cl -0.062 7.062 22 C -0.114 4.114 23 C -0.121 4.121 24 C 0.060 3.940 25 F -0.135 7.135 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.265 0.735 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.412 0.588 36 H 0.172 0.828 37 H 0.140 0.860 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 -0.703 -18.645 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.022 3.978 3 N -0.287 5.287 4 C -0.419 4.419 5 H 0.093 0.907 6 C -0.145 4.145 7 N -0.514 5.514 8 Si 0.661 3.339 9 H -0.220 1.220 10 H -0.225 1.225 11 H -0.146 1.146 12 C 0.042 3.958 13 H 0.113 0.887 14 C -0.213 4.213 15 C 0.275 3.725 16 O -0.372 6.372 17 N -0.324 5.324 18 C 0.048 3.952 19 C -0.126 4.126 20 C -0.050 4.050 21 Cl -0.033 7.033 22 C -0.134 4.134 23 C -0.141 4.141 24 C 0.037 3.963 25 F -0.114 7.114 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.248 0.752 36 H 0.189 0.811 37 H 0.158 0.842 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.735 -1.605 -18.011 18.970 hybrid contribution 0.858 -0.180 -0.146 0.889 sum 6.593 -1.784 -18.157 19.399 Atomic orbital electron populations 1.22433 0.99368 0.99148 1.01962 1.21084 0.91408 0.85491 0.99861 1.44064 1.72559 1.12157 0.99956 1.18620 1.37149 0.99261 0.86912 0.90679 1.25584 0.96688 0.97460 0.94804 1.70011 1.39828 1.42857 0.98660 0.87504 0.83234 0.82481 0.80697 1.21988 1.22491 1.14572 1.20846 0.89657 0.97509 0.87815 0.88652 1.22246 0.98466 1.02276 0.98285 1.23826 0.84374 0.86805 0.77498 1.90606 1.64785 1.20155 1.61666 1.44301 1.35973 1.17924 1.34158 1.17827 0.91557 0.96421 0.89373 1.21533 0.92641 0.95506 1.02969 1.20808 0.96244 0.94294 0.93698 1.98380 1.72074 1.51044 1.81833 1.20793 1.01097 0.98334 0.93135 1.20832 0.95664 0.96851 1.00734 1.17475 0.96430 0.92404 0.89951 1.91482 1.76569 1.59990 1.83370 0.92432 0.93280 0.94590 0.93311 0.93150 0.92544 0.92279 0.90931 0.93215 0.75165 0.81063 0.84198 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 9.97 37.16 0.37 -2.85 16 2 C 0.15 3.20 3.66 -4.04 -0.01 3.18 16 3 N -0.57 -12.72 1.71 -166.97 -0.29 -13.01 16 4 C -0.29 -7.73 9.67 -15.06 -0.15 -7.88 16 5 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 6 C 0.06 1.67 5.07 -17.43 -0.09 1.58 16 7 N -0.88 -26.05 13.97 55.49 0.78 -25.27 16 8 Si 0.84 21.74 26.37 -169.99 -4.48 17.25 16 9 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 10 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 11 H -0.22 -5.69 4.45 56.52 0.25 -5.44 16 12 C 0.15 2.77 3.11 -69.08 -0.22 2.55 16 13 H 0.10 1.62 7.90 -51.93 -0.41 1.21 16 14 C -0.15 -2.25 7.90 37.16 0.29 -1.95 16 15 C 0.49 8.72 6.88 -10.98 -0.08 8.64 16 16 O -0.50 -10.55 9.96 5.55 0.06 -10.50 16 17 N -0.68 -9.77 5.29 -9.81 -0.05 -9.82 16 18 C 0.15 2.11 6.43 -83.60 -0.54 1.57 16 19 C -0.11 -1.65 8.55 -39.37 -0.34 -1.98 16 20 C -0.02 -0.30 6.32 -39.52 -0.25 -0.55 16 21 Cl -0.06 -0.81 28.95 -51.86 -1.50 -2.32 16 22 C -0.11 -1.19 9.82 -39.52 -0.39 -1.58 16 23 C -0.12 -1.22 10.02 -39.55 -0.40 -1.62 16 24 C 0.06 0.73 7.31 -39.26 -0.29 0.44 16 25 F -0.14 -1.59 16.85 2.25 0.04 -1.55 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.84 5.44 -51.93 -0.28 0.55 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 1.18 4.77 -51.93 -0.25 0.93 16 30 H 0.05 1.08 6.28 -51.93 -0.33 0.75 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.06 0.90 6.51 -51.93 -0.34 0.56 16 33 H 0.07 1.07 7.83 -51.93 -0.41 0.66 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.41 4.74 8.51 -40.82 -0.35 4.39 16 36 H 0.17 3.21 5.66 -52.49 -0.30 2.91 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 326.27 15.07 4.92 4.92 Total: -1.00 -30.79 326.27 -7.08 -37.87 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.48 Total: 2.88 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.07 Total: -0.45 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.44 Total: -48.10 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.06 Total: -10.50 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.48 Total: 17.25 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.79 -7.08 -37.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298281676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.938 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.28 seconds