Wall clock time and date at job start Tue Mar 31 2020 10:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47411 * 2 1 4 4 S 1.81007 * 109.46764 * 240.00454 * 2 1 3 5 5 C 1.76196 * 100.00153 * 65.00099 * 4 2 1 6 6 N 1.32391 * 126.25688 * 0.02562 * 5 4 2 7 7 N 1.28515 * 110.20151 * 180.02562 * 6 5 4 8 8 C 1.33104 * 109.74916 * 359.97438 * 7 6 5 9 9 C 1.39771 * 126.56620 * 179.74152 * 8 7 6 10 10 H 1.08001 * 119.99979 * 180.02562 * 9 8 7 11 11 C 1.40083 * 120.00227 * 0.02562 * 9 8 7 12 12 N 1.30818 * 119.99767 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00238 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47030 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46802 * 119.99766 * 13 11 9 16 16 H 1.48490 * 109.47113 * 239.99731 * 13 11 9 17 17 N 1.36673 * 126.25811 * 180.02562 * 5 4 2 18 18 C 1.46496 * 127.15182 * 0.02562 * 17 5 4 19 19 C 1.50692 * 109.46991 * 120.00683 * 2 1 3 20 20 C 1.38385 * 119.92767 * 59.72311 * 19 2 1 21 21 C 1.38343 * 120.30493 * 179.76255 * 20 19 2 22 22 C 1.37974 * 120.14956 * 0.51428 * 21 20 19 23 23 C 1.39610 * 119.84551 * 359.74373 * 22 21 20 24 24 C 1.43202 * 120.14725 * 179.97438 * 23 22 21 25 25 N 5.95821 * 122.89250 * 83.79228 * 2 1 3 26 26 C 1.37929 * 119.92210 * 239.99755 * 19 2 1 27 27 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47250 * 299.99682 * 1 2 3 29 29 H 1.09006 * 109.47045 * 59.99782 * 1 2 3 30 30 H 0.96993 * 119.99881 * 180.02562 * 12 11 9 31 31 H 1.09001 * 109.46891 * 269.97466 * 18 17 5 32 32 H 1.08996 * 109.47385 * 29.97355 * 18 17 5 33 33 H 1.09000 * 109.47355 * 149.97527 * 18 17 5 34 34 H 1.08000 * 119.84466 * 359.97438 * 20 19 2 35 35 H 1.07999 * 119.92338 * 180.25023 * 21 20 19 36 36 H 1.08002 * 120.07219 * 179.72434 * 22 21 20 37 37 H 1.07998 * 120.07540 * 359.97438 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1333 -0.8532 -1.4780 5 6 1.5439 0.2424 -2.7257 6 7 0.8581 1.3575 -2.5283 7 7 0.5856 1.9160 -3.6533 8 6 1.0845 1.1877 -4.6495 9 6 0.9883 1.4683 -6.0153 10 1 1.4349 0.8000 -6.7367 11 6 0.3126 2.6163 -6.4487 12 7 -0.2280 3.4261 -5.5749 13 14 0.1846 2.9917 -8.2741 14 1 0.8747 1.9284 -9.0477 15 1 -1.2458 3.0421 -8.6700 16 1 0.8226 4.3027 -8.5557 17 7 1.7110 0.0964 -4.0743 18 6 2.4079 -0.9902 -4.7670 19 6 2.0323 -0.7105 1.2303 20 6 1.6923 -2.0338 1.4506 21 6 2.1531 -2.6951 2.5749 22 6 2.9470 -2.0352 3.4904 23 6 3.2894 -0.6986 3.2771 24 6 4.1125 -0.0073 4.2233 25 7 4.7657 0.5410 4.9737 26 6 2.8252 -0.0388 2.1372 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.6962 4.2207 -5.8750 31 1 3.4592 -0.7288 -4.8877 32 1 2.3261 -1.9058 -4.1814 33 1 1.9570 -1.1444 -5.7473 34 1 1.0672 -2.5535 0.7396 35 1 1.8873 -3.7289 2.7386 36 1 3.3024 -2.5514 4.3699 37 1 3.0865 0.9951 1.9662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357083520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:12 Heat of formation + Delta-G solvation = 102.314763 kcal Electronic energy + Delta-G solvation = -21989.001621 eV Core-core repulsion = 18664.928175 eV Total energy + Delta-G solvation = -3324.073445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.40752 -40.60990 -37.67839 -35.65324 -35.36560 -34.93837 -32.26604 -31.38400 -30.41765 -28.17006 -27.34763 -25.42456 -24.50267 -22.85901 -22.70395 -22.12446 -19.43582 -19.17497 -17.73387 -17.32455 -17.20296 -16.84352 -16.49086 -16.06126 -15.52330 -15.48387 -15.09309 -14.86996 -14.53675 -14.29694 -14.13791 -13.92771 -13.80430 -13.76428 -13.42310 -13.07690 -12.98772 -12.94320 -12.75286 -12.68646 -12.36685 -12.01011 -11.88376 -11.57228 -11.42597 -11.39989 -10.52822 -10.30657 -10.22454 -9.92006 -9.77638 -8.52675 -8.49011 -6.54840 -0.21507 0.09909 0.74154 1.21905 1.27787 1.42639 1.58178 1.60005 1.63483 1.95599 2.19723 2.48662 2.54953 2.82165 2.91192 3.36844 3.50244 3.83854 4.03391 4.11350 4.22320 4.28013 4.34085 4.47723 4.53897 4.64686 4.74283 4.87810 4.92941 4.96799 4.98162 5.00217 5.29251 5.32740 5.38271 5.46942 5.52751 5.60552 5.85872 6.10409 6.25078 6.41119 6.78590 6.96019 8.43115 8.69835 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.028361 B = 0.002816 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.017088 B = 9941.646876 C =10272.784039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.020 4.020 3 H 0.084 0.916 4 S 0.002 5.998 5 C 0.055 3.945 6 N -0.321 5.321 7 N -0.390 5.390 8 C 0.317 3.683 9 C -0.471 4.471 10 H 0.101 0.899 11 C 0.029 3.971 12 N -0.788 5.788 13 Si 1.004 2.996 14 H -0.246 1.246 15 H -0.268 1.268 16 H -0.269 1.269 17 N -0.522 5.522 18 C 0.093 3.907 19 C -0.076 4.076 20 C -0.072 4.072 21 C -0.105 4.105 22 C -0.054 4.054 23 C -0.039 4.039 24 C 0.281 3.719 25 N -0.467 5.467 26 C -0.059 4.059 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.283 0.717 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.145 0.855 35 H 0.172 0.828 36 H 0.160 0.840 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -15.482 9.835 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 H 0.102 0.898 4 S 0.232 5.768 5 C -0.318 4.318 6 N -0.165 5.165 7 N -0.236 5.236 8 C 0.070 3.930 9 C -0.512 4.512 10 H 0.119 0.881 11 C -0.191 4.191 12 N -0.413 5.413 13 Si 0.823 3.177 14 H -0.169 1.169 15 H -0.192 1.192 16 H -0.194 1.194 17 N -0.224 5.224 18 C -0.049 4.049 19 C -0.078 4.078 20 C -0.092 4.092 21 C -0.123 4.123 22 C -0.075 4.075 23 C -0.043 4.043 24 C -0.034 4.034 25 N -0.143 5.143 26 C -0.081 4.081 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.163 0.837 35 H 0.189 0.811 36 H 0.178 0.822 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.384 -14.323 11.664 18.985 hybrid contribution -0.413 0.960 -1.793 2.075 sum 3.971 -13.363 9.871 17.082 Atomic orbital electron populations 1.22025 0.91589 1.03313 1.02785 1.21974 1.00046 1.01240 0.91683 0.89756 1.84230 1.70937 1.28398 0.93257 1.26474 1.12972 1.04308 0.88094 1.74376 1.14449 1.05296 1.22419 1.75331 1.29337 1.25479 0.93448 1.22018 0.91407 0.83214 0.96387 1.18618 1.35140 1.09453 0.87955 0.88068 1.26948 0.92578 0.94267 1.05356 1.70161 1.23314 1.09789 1.38062 0.84836 0.78988 0.79216 0.74614 1.16852 1.19239 1.19413 1.46390 1.48545 1.22796 1.04655 1.21837 0.96844 0.87933 0.98318 1.19064 0.99466 0.95354 0.93909 1.21587 0.97082 0.92646 0.97846 1.21426 0.96548 1.01784 0.92506 1.21543 0.95036 0.91020 0.99932 1.15931 1.00846 0.94591 0.92918 1.25919 0.92440 0.92504 0.92520 1.81275 1.11680 1.09632 1.11682 1.21046 0.94799 1.00200 0.92058 0.90258 0.90692 0.93489 0.90654 0.91034 0.88881 0.89457 0.83718 0.81071 0.82246 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 8.82 71.98 0.63 -3.39 16 2 C -0.02 -0.57 2.52 29.85 0.08 -0.50 16 3 H 0.08 2.78 7.87 -2.40 -0.02 2.76 16 4 S 0.00 0.06 20.85 -56.49 -1.18 -1.11 16 5 C 0.05 2.53 7.77 179.18 1.39 3.92 16 6 N -0.32 -17.43 9.74 -56.17 -0.55 -17.98 16 7 N -0.39 -23.87 10.48 -55.02 -0.58 -24.44 16 8 C 0.32 17.78 7.53 133.23 1.00 18.79 16 9 C -0.47 -24.93 9.04 23.09 0.21 -24.72 16 10 H 0.10 4.75 7.30 -2.91 -0.02 4.73 16 11 C 0.03 1.49 5.50 85.29 0.47 1.96 16 12 N -0.79 -44.41 11.94 21.86 0.26 -44.15 16 13 Si 1.00 37.53 29.56 68.60 2.03 39.55 16 14 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 15 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 16 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 17 N -0.52 -24.48 3.26 -543.63 -1.77 -26.25 16 18 C 0.09 3.14 10.88 127.77 1.39 4.53 16 19 C -0.08 -1.54 4.77 -19.91 -0.10 -1.63 16 20 C -0.07 -1.05 8.77 22.33 0.20 -0.86 16 21 C -0.11 -0.98 10.03 22.23 0.22 -0.76 16 22 C -0.05 -0.58 9.76 22.54 0.22 -0.36 16 23 C -0.04 -0.65 5.73 -21.36 -0.12 -0.77 16 24 C 0.28 5.86 15.33 88.33 1.35 7.22 16 25 N -0.47 -12.21 18.54 19.00 0.35 -11.85 16 26 C -0.06 -1.14 9.38 22.54 0.21 -0.92 16 27 H 0.08 1.92 7.36 -2.39 -0.02 1.90 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.84 5.89 -2.38 -0.01 1.82 16 30 H 0.28 14.40 8.30 -92.71 -0.77 13.64 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.09 2.59 7.85 -2.39 -0.02 2.57 16 33 H 0.09 2.76 7.52 -2.39 -0.02 2.74 16 34 H 0.15 1.92 7.55 -2.91 -0.02 1.90 16 35 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.13 2.59 7.94 -2.91 -0.02 2.56 16 Total: -1.00 -76.42 341.49 6.84 -69.58 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.11 Total: 14.17 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 7.16 Total: 2.50 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -2.28 Total: -124.68 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.55 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -1.18 Total: -1.11 kcal Total: -76.42 6.84 -69.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357083520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.890 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds