Wall clock time and date at job start Tue Mar 31 2020 10:12:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52997 * 109.47059 * 2 1
4 4 N 1.46499 * 109.46933 * 240.00227 * 2 1 3
5 5 C 1.34772 * 120.00373 * 60.10571 * 4 2 1
6 6 O 1.21587 * 119.99877 * 359.97438 * 5 4 2
7 7 N 1.34779 * 120.00566 * 179.97438 * 5 4 2
8 8 C 1.46496 * 120.00267 * 180.02562 * 7 5 4
9 9 C 1.50701 * 109.47033 * 179.97438 * 8 7 5
10 10 H 1.07997 * 120.00383 * 0.02562 * 9 8 7
11 11 C 1.37885 * 119.99715 * 179.97438 * 9 8 7
12 12 N 1.31509 * 120.00027 * 0.02562 * 11 9 8
13 13 Si 1.86804 * 119.99694 * 180.02562 * 11 9 8
14 14 H 1.48499 * 109.47182 * 89.99988 * 13 11 9
15 15 H 1.48501 * 109.46757 * 209.99926 * 13 11 9
16 16 H 1.48497 * 109.46964 * 329.99832 * 13 11 9
17 17 C 1.50695 * 109.47258 * 120.00408 * 2 1 3
18 18 C 1.38241 * 120.00860 * 1.51990 * 17 2 1
19 19 C 1.38217 * 120.05177 * 180.25441 * 18 17 2
20 20 C 1.38259 * 120.05784 * 359.45035 * 19 18 17
21 21 C 1.38270 * 120.01536 * 0.25460 * 20 19 18
22 22 Cl 1.73601 * 120.02761 * 180.02562 * 21 20 19
23 23 C 1.38407 * 120.00614 * 181.20390 * 17 2 1
24 24 F 1.35098 * 120.03316 * 0.04459 * 23 17 2
25 25 H 1.08999 * 109.47245 * 299.99424 * 1 2 3
26 26 H 1.09002 * 109.47243 * 60.00237 * 1 2 3
27 27 H 1.09000 * 109.47047 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47057 * 180.02562 * 3 2 1
29 29 H 1.08994 * 109.47506 * 299.99878 * 3 2 1
30 30 H 1.08998 * 109.47088 * 60.00450 * 3 2 1
31 31 H 0.97002 * 120.00029 * 240.10180 * 4 2 1
32 32 H 0.97002 * 119.99836 * 359.97438 * 7 5 4
33 33 H 1.09003 * 109.47307 * 299.99959 * 8 7 5
34 34 H 1.08995 * 109.47376 * 59.99807 * 8 7 5
35 35 H 0.97003 * 119.99951 * 180.02562 * 12 11 9
36 36 H 1.07999 * 119.97148 * 0.02562 * 18 17 2
37 37 H 1.08000 * 119.96878 * 179.72998 * 19 18 17
38 38 H 1.08009 * 119.99035 * 180.27363 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0182 -0.6906 -1.1962
5 6 1.6944 -0.2289 -2.4203
6 8 0.9966 0.7605 -2.5318
7 7 2.1441 -0.8639 -3.5208
8 6 1.7925 -0.3617 -4.8513
9 6 2.4167 -1.2433 -5.9021
10 1 3.0150 -2.0930 -5.6083
11 6 2.2230 -0.9657 -7.2388
12 7 1.4940 0.0687 -7.5966
13 14 2.9961 -2.0590 -8.5413
14 1 2.0569 -3.1557 -8.8882
15 1 3.2866 -1.2537 -9.7546
16 1 4.2594 -2.6367 -8.0164
17 6 2.0323 -0.7105 1.2304
18 6 1.1346 -1.2634 2.1244
19 6 1.5942 -1.9107 3.2559
20 6 2.9528 -2.0161 3.4896
21 6 3.8532 -1.4693 2.5940
22 17 5.5592 -1.6021 2.8868
23 6 3.3928 -0.8152 1.4621
24 9 4.2711 -0.2800 0.5862
25 1 -0.3634 0.5137 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 3.1299 1.4425 -0.0005
29 1 1.6767 1.9563 -0.8899
30 1 1.6767 1.9563 0.8900
31 1 2.5747 -1.4801 -1.1073
32 1 2.7011 -1.6530 -3.4319
33 1 0.7087 -0.3686 -4.9677
34 1 2.1636 0.6569 -4.9650
35 1 1.3574 0.2637 -8.5370
36 1 0.0731 -1.1863 1.9405
37 1 0.8915 -2.3384 3.9557
38 1 3.3109 -2.5260 4.3719
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000426418991.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:12:49
Heat of formation + Delta-G solvation = -57.784571 kcal
Electronic energy + Delta-G solvation = -23867.960129 eV
Core-core repulsion = 20071.838573 eV
Total energy + Delta-G solvation = -3796.121556 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.094 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-49.18537 -40.29362 -39.02233 -37.04614 -35.93846 -33.99605 -32.52687 -31.56794
-30.80752 -29.74551 -27.31556 -26.92839 -24.10985 -22.83689 -22.63150 -20.72852
-19.59696 -18.35415 -17.83645 -17.00154 -16.68321 -16.01110 -15.85860 -15.44901
-14.94462 -14.70669 -14.60945 -14.29204 -13.85270 -13.51536 -13.28087 -13.22824
-13.00011 -12.56843 -12.15937 -12.00999 -11.92893 -11.92539 -11.83143 -11.58209
-11.52978 -11.11046 -10.92026 -10.90951 -10.77706 -10.25607 -9.36118 -9.32914
-9.14240 -9.03338 -8.73287 -8.66354 -7.72561 -6.12812 -4.18914 0.58620
0.63961 1.66170 2.95442 3.26724 3.32515 3.34997 3.48300 3.74222
3.96954 4.12990 4.35341 4.42452 4.60743 4.73850 4.95382 5.04090
5.17934 5.23398 5.27296 5.46461 5.54047 5.71473 5.74892 5.80631
5.85247 5.96986 6.08080 6.27218 6.47568 6.55765 6.92186 7.14934
7.56068 7.59178 7.60806 7.93525 8.07666 8.80006 8.97922 9.37122
9.51719 10.97417
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.018827 B = 0.003164 C = 0.002891
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1486.895346 B = 8848.143535 C = 9682.468725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.241 3.759
3 C -0.169 4.169
4 N -0.748 5.748
5 C 0.699 3.301
6 O -0.595 6.595
7 N -0.729 5.729
8 C 0.268 3.732
9 C -0.541 4.541
10 H 0.062 0.938
11 C 0.064 3.936
12 N -0.886 5.886
13 Si 0.903 3.097
14 H -0.279 1.279
15 H -0.285 1.285
16 H -0.273 1.273
17 C -0.110 4.110
18 C -0.075 4.075
19 C -0.119 4.119
20 C -0.083 4.083
21 C -0.078 4.078
22 Cl -0.051 7.051
23 C 0.124 3.876
24 F -0.115 7.115
25 H 0.061 0.939
26 H 0.093 0.907
27 H 0.057 0.943
28 H 0.061 0.939
29 H 0.093 0.907
30 H 0.057 0.943
31 H 0.389 0.611
32 H 0.386 0.614
33 H 0.024 0.976
34 H 0.024 0.976
35 H 0.265 0.735
36 H 0.147 0.853
37 H 0.140 0.860
38 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.772 -4.804 25.416 25.927
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.154 3.846
3 C -0.227 4.227
4 N -0.405 5.405
5 C 0.399 3.601
6 O -0.475 6.475
7 N -0.381 5.381
8 C 0.147 3.853
9 C -0.580 4.580
10 H 0.080 0.920
11 C -0.140 4.140
12 N -0.523 5.523
13 Si 0.730 3.270
14 H -0.205 1.205
15 H -0.210 1.210
16 H -0.198 1.198
17 C -0.112 4.112
18 C -0.093 4.093
19 C -0.138 4.138
20 C -0.102 4.102
21 C -0.105 4.105
22 Cl -0.022 7.022
23 C 0.104 3.896
24 F -0.094 7.094
25 H 0.080 0.920
26 H 0.111 0.889
27 H 0.076 0.924
28 H 0.080 0.920
29 H 0.111 0.889
30 H 0.076 0.924
31 H 0.222 0.778
32 H 0.218 0.782
33 H 0.042 0.958
34 H 0.042 0.958
35 H 0.075 0.925
36 H 0.165 0.835
37 H 0.158 0.842
38 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 1.240 -3.745 25.053 25.362
hybrid contribution 1.354 -1.285 -0.744 2.009
sum 2.594 -5.030 24.309 24.959
Atomic orbital electron populations
1.22354 0.93490 1.02363 1.04132 1.18696 0.94353 0.91536 0.79988
1.22365 1.01812 0.94671 1.03852 1.45299 1.57971 1.33192 1.04064
1.16043 0.80701 0.83279 0.80048 1.90795 1.43323 1.27622 1.85732
1.45744 1.54391 1.31557 1.06405 1.18960 0.96253 0.94984 0.75076
1.21240 1.32997 1.12799 0.90938 0.92004 1.24937 0.95122 0.95398
0.98544 1.69976 1.38163 1.26937 1.17245 0.86425 0.79513 0.80177
0.80844 1.20507 1.21026 1.19779 1.20141 0.90792 1.01313 0.98954
1.21300 1.00767 0.94558 0.92681 1.21204 0.94810 0.99801 0.97961
1.21015 0.92436 0.98311 0.98454 1.21025 0.86872 1.05359 0.97288
1.98397 1.11226 1.96873 1.95671 1.17307 0.87011 0.97196 0.88102
1.91573 1.67734 1.83188 1.66855 0.91967 0.88857 0.92411 0.92032
0.88859 0.92360 0.77773 0.78244 0.95754 0.95753 0.92503 0.83505
0.84171 0.84011
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.09 7.06 37.16 0.26 -1.83 16
2 C 0.24 3.22 0.68 -132.98 -0.09 3.13 16
3 C -0.17 -2.44 8.17 37.16 0.30 -2.13 16
4 N -0.75 -11.60 4.73 -53.51 -0.25 -11.86 16
5 C 0.70 14.24 7.98 -86.92 -0.69 13.55 16
6 O -0.60 -14.01 12.55 5.29 0.07 -13.94 16
7 N -0.73 -15.80 5.55 -66.42 -0.37 -16.17 16
8 C 0.27 7.21 5.43 -5.20 -0.03 7.19 16
9 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16
10 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16
11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16
12 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16
13 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16
14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
17 C -0.11 -1.20 4.80 -104.56 -0.50 -1.70 16
18 C -0.07 -0.61 8.98 -39.59 -0.36 -0.96 16
19 C -0.12 -0.77 10.04 -39.58 -0.40 -1.17 16
20 C -0.08 -0.61 9.83 -39.56 -0.39 -1.00 16
21 C -0.08 -0.77 6.33 -39.44 -0.25 -1.01 16
22 Cl -0.05 -0.50 28.62 -51.86 -1.48 -1.99 16
23 C 0.12 1.43 6.72 -39.39 -0.26 1.16 16
24 F -0.12 -1.56 14.29 2.25 0.03 -1.53 16
25 H 0.06 0.61 7.59 -51.93 -0.39 0.22 16
26 H 0.09 1.52 6.17 -51.93 -0.32 1.20 16
27 H 0.06 0.66 7.44 -51.93 -0.39 0.27 16
28 H 0.06 0.91 6.21 -51.93 -0.32 0.59 16
29 H 0.09 1.64 6.16 -51.93 -0.32 1.32 16
30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
31 H 0.39 5.34 8.31 -40.82 -0.34 5.00 16
32 H 0.39 7.32 8.34 -40.82 -0.34 6.98 16
33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16
34 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16
35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16
36 H 0.15 0.98 5.90 -52.49 -0.31 0.67 16
37 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16
38 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16
LS Contribution 333.19 15.07 5.02 5.02
Total: -1.00 -32.06 333.19 -8.47 -40.53
By element:
Atomic # 1 Polarization: 12.10 SS G_CDS: -4.38 Total: 7.72 kcal
Atomic # 6 Polarization: 4.52 SS G_CDS: -2.82 Total: 1.69 kcal
Atomic # 7 Polarization: -53.70 SS G_CDS: 0.11 Total: -53.59 kcal
Atomic # 8 Polarization: -14.01 SS G_CDS: 0.07 Total: -13.94 kcal
Atomic # 9 Polarization: -1.56 SS G_CDS: 0.03 Total: -1.53 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal
Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.99 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -32.06 -8.47 -40.53 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000426418991.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.252 kcal
(2) G-P(sol) polarization free energy of solvation -32.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.313 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.785 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds