Wall clock time and date at job start Tue Mar 31 2020 10:12:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52997 * 109.47059 * 2 1
4 4 N 1.46499 * 109.46933 * 240.00227 * 2 1 3
5 5 C 1.34772 * 120.00373 * 60.10571 * 4 2 1
6 6 O 1.21587 * 119.99877 * 359.97438 * 5 4 2
7 7 N 1.34779 * 120.00566 * 179.97438 * 5 4 2
8 8 C 1.46496 * 120.00267 * 180.02562 * 7 5 4
9 9 C 1.50701 * 109.47033 * 179.97438 * 8 7 5
10 10 H 1.07997 * 120.00383 * 0.02562 * 9 8 7
11 11 C 1.37885 * 119.99715 * 179.97438 * 9 8 7
12 12 N 1.31509 * 120.00027 * 0.02562 * 11 9 8
13 13 Si 1.86804 * 119.99694 * 180.02562 * 11 9 8
14 14 H 1.48499 * 109.47182 * 89.99988 * 13 11 9
15 15 H 1.48501 * 109.46757 * 209.99926 * 13 11 9
16 16 H 1.48497 * 109.46964 * 329.99832 * 13 11 9
17 17 C 1.50695 * 109.47258 * 120.00408 * 2 1 3
18 18 C 1.38241 * 120.00860 * 1.51990 * 17 2 1
19 19 C 1.38217 * 120.05177 * 180.25441 * 18 17 2
20 20 C 1.38259 * 120.05784 * 359.45035 * 19 18 17
21 21 C 1.38270 * 120.01536 * 0.25460 * 20 19 18
22 22 Cl 1.73601 * 120.02761 * 180.02562 * 21 20 19
23 23 C 1.38407 * 120.00614 * 181.20390 * 17 2 1
24 24 F 1.35098 * 120.03316 * 0.04459 * 23 17 2
25 25 H 1.08999 * 109.47245 * 299.99424 * 1 2 3
26 26 H 1.09002 * 109.47243 * 60.00237 * 1 2 3
27 27 H 1.09000 * 109.47047 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47057 * 180.02562 * 3 2 1
29 29 H 1.08994 * 109.47506 * 299.99878 * 3 2 1
30 30 H 1.08998 * 109.47088 * 60.00450 * 3 2 1
31 31 H 0.97002 * 120.00029 * 240.10180 * 4 2 1
32 32 H 0.97002 * 119.99836 * 359.97438 * 7 5 4
33 33 H 1.09003 * 109.47307 * 299.99959 * 8 7 5
34 34 H 1.08995 * 109.47376 * 59.99807 * 8 7 5
35 35 H 0.97003 * 119.99951 * 180.02562 * 12 11 9
36 36 H 1.07999 * 119.97148 * 0.02562 * 18 17 2
37 37 H 1.08000 * 119.96878 * 179.72998 * 19 18 17
38 38 H 1.08009 * 119.99035 * 180.27363 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0182 -0.6906 -1.1962
5 6 1.6944 -0.2289 -2.4203
6 8 0.9966 0.7605 -2.5318
7 7 2.1441 -0.8639 -3.5208
8 6 1.7925 -0.3617 -4.8513
9 6 2.4167 -1.2433 -5.9021
10 1 3.0150 -2.0930 -5.6083
11 6 2.2230 -0.9657 -7.2388
12 7 1.4940 0.0687 -7.5966
13 14 2.9961 -2.0590 -8.5413
14 1 2.0569 -3.1557 -8.8882
15 1 3.2866 -1.2537 -9.7546
16 1 4.2594 -2.6367 -8.0164
17 6 2.0323 -0.7105 1.2304
18 6 1.1346 -1.2634 2.1244
19 6 1.5942 -1.9107 3.2559
20 6 2.9528 -2.0161 3.4896
21 6 3.8532 -1.4693 2.5940
22 17 5.5592 -1.6021 2.8868
23 6 3.3928 -0.8152 1.4621
24 9 4.2711 -0.2800 0.5862
25 1 -0.3634 0.5137 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 3.1299 1.4425 -0.0005
29 1 1.6767 1.9563 -0.8899
30 1 1.6767 1.9563 0.8900
31 1 2.5747 -1.4801 -1.1073
32 1 2.7011 -1.6530 -3.4319
33 1 0.7087 -0.3686 -4.9677
34 1 2.1636 0.6569 -4.9650
35 1 1.3574 0.2637 -8.5370
36 1 0.0731 -1.1863 1.9405
37 1 0.8915 -2.3384 3.9557
38 1 3.3109 -2.5260 4.3719
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000426418991.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:12:48
Heat of formation + Delta-G solvation = -79.260097 kcal
Electronic energy + Delta-G solvation = -23868.891377 eV
Core-core repulsion = 20071.838573 eV
Total energy + Delta-G solvation = -3797.052804 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.094 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-50.08231 -41.47418 -40.15744 -37.93286 -37.05895 -35.90979 -34.45908 -32.91764
-31.51321 -30.69562 -28.96136 -28.37535 -25.26441 -24.39233 -23.50587 -22.14740
-20.98398 -19.79258 -18.90402 -18.17028 -17.79352 -17.38523 -16.86635 -16.76092
-16.35737 -16.30930 -15.71027 -15.53837 -15.13870 -14.70979 -14.48246 -14.33399
-14.02760 -14.00168 -13.95725 -13.36394 -13.13137 -12.94153 -12.88294 -12.74149
-12.68176 -12.57604 -12.35973 -12.20943 -12.05262 -11.80592 -11.46582 -10.87196
-10.78691 -10.26583 -9.95976 -9.73792 -9.59138 -8.28035 -6.44083 -0.08362
-0.05589 0.95792 1.42794 1.45583 1.56549 1.87531 2.29208 2.37996
2.48200 3.01518 3.06800 3.24380 3.51452 3.76737 3.92544 4.02373
4.10304 4.22484 4.48980 4.62067 4.71816 4.80786 4.86845 4.87282
4.93700 5.09738 5.14195 5.24129 5.29372 5.30106 5.41534 5.49962
5.62982 5.67202 5.73709 5.87019 6.24551 6.67712 7.25127 7.31189
7.77028 8.84204
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.018827 B = 0.003164 C = 0.002891
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1486.895346 B = 8848.143535 C = 9682.468725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.236 3.764
3 C -0.165 4.165
4 N -0.729 5.729
5 C 0.698 3.302
6 O -0.629 6.629
7 N -0.728 5.728
8 C 0.289 3.711
9 C -0.556 4.556
10 H 0.080 0.920
11 C 0.005 3.995
12 N -0.929 5.929
13 Si 0.985 3.015
14 H -0.269 1.269
15 H -0.283 1.283
16 H -0.258 1.258
17 C -0.121 4.121
18 C -0.070 4.070
19 C -0.101 4.101
20 C -0.074 4.074
21 C -0.088 4.088
22 Cl -0.059 7.059
23 C 0.100 3.900
24 F -0.137 7.137
25 H 0.094 0.906
26 H 0.051 0.949
27 H 0.072 0.928
28 H 0.051 0.949
29 H 0.054 0.946
30 H 0.082 0.918
31 H 0.400 0.600
32 H 0.400 0.600
33 H -0.012 1.012
34 H -0.016 1.016
35 H 0.269 0.731
36 H 0.166 0.834
37 H 0.181 0.819
38 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.848 -7.417 27.829 28.859
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.151 3.849
3 C -0.223 4.223
4 N -0.385 5.385
5 C 0.398 3.602
6 O -0.511 6.511
7 N -0.381 5.381
8 C 0.166 3.834
9 C -0.594 4.594
10 H 0.098 0.902
11 C -0.195 4.195
12 N -0.568 5.568
13 Si 0.808 3.192
14 H -0.194 1.194
15 H -0.209 1.209
16 H -0.182 1.182
17 C -0.122 4.122
18 C -0.088 4.088
19 C -0.119 4.119
20 C -0.092 4.092
21 C -0.116 4.116
22 Cl -0.030 7.030
23 C 0.079 3.921
24 F -0.116 7.116
25 H 0.113 0.887
26 H 0.070 0.930
27 H 0.091 0.909
28 H 0.070 0.930
29 H 0.073 0.927
30 H 0.101 0.899
31 H 0.235 0.765
32 H 0.235 0.765
33 H 0.006 0.994
34 H 0.002 0.998
35 H 0.078 0.922
36 H 0.184 0.816
37 H 0.198 0.802
38 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges 1.340 -6.393 27.540 28.304
hybrid contribution 1.287 -0.444 -1.328 1.902
sum 2.627 -6.836 26.212 27.216
Atomic orbital electron populations
1.22293 0.92680 1.03167 1.03660 1.18854 0.94981 0.90970 0.80126
1.22283 1.01152 0.95717 1.03118 1.45180 1.57089 1.33167 1.03111
1.16175 0.80257 0.82743 0.81034 1.90787 1.44727 1.29129 1.86478
1.45379 1.55157 1.32314 1.05262 1.18361 0.93788 0.93372 0.77889
1.21602 1.33199 1.13246 0.91339 0.90184 1.26038 0.95373 0.96820
1.01232 1.70136 1.39636 1.29010 1.18015 0.85164 0.78974 0.77945
0.77162 1.19448 1.20859 1.18207 1.19876 0.90991 1.02901 0.98475
1.21573 1.01205 0.93602 0.92402 1.21640 0.94980 0.97885 0.97424
1.21434 0.92509 0.96921 0.98353 1.21202 0.86980 1.05919 0.97466
1.98394 1.12040 1.96913 1.95623 1.17570 0.87081 0.98604 0.88806
1.91514 1.68475 1.83815 1.67752 0.88704 0.93010 0.90892 0.92952
0.92655 0.89874 0.76480 0.76507 0.99407 0.99814 0.92235 0.81638
0.80190 0.81327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.89 7.06 71.98 0.51 -3.38 16
2 C 0.24 6.22 0.68 2.85 0.00 6.22 16
3 C -0.16 -4.88 8.17 71.98 0.59 -4.29 16
4 N -0.73 -22.92 4.73 -441.47 -2.09 -25.00 16
5 C 0.70 29.70 7.98 179.06 1.43 31.13 16
6 O -0.63 -31.56 12.55 -3.99 -0.05 -31.61 16
7 N -0.73 -32.73 5.55 -482.31 -2.68 -35.41 16
8 C 0.29 16.39 5.43 85.63 0.46 16.85 16
9 C -0.56 -31.09 9.28 25.60 0.24 -30.85 16
10 H 0.08 4.09 7.60 -2.91 -0.02 4.06 16
11 C 0.01 0.28 5.46 84.66 0.46 0.75 16
12 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16
13 Si 0.98 43.15 29.54 68.60 2.03 45.18 16
14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
15 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16
16 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16
17 C -0.12 -2.38 4.80 -19.82 -0.10 -2.48 16
18 C -0.07 -0.86 8.98 22.27 0.20 -0.66 16
19 C -0.10 -0.79 10.04 22.27 0.22 -0.57 16
20 C -0.07 -0.78 9.83 22.28 0.22 -0.56 16
21 C -0.09 -1.55 6.33 22.36 0.14 -1.40 16
22 Cl -0.06 -1.09 28.62 -2.72 -0.08 -1.17 16
23 C 0.10 2.17 6.72 22.40 0.15 2.32 16
24 F -0.14 -3.76 14.29 44.97 0.64 -3.12 16
25 H 0.09 1.64 7.59 -2.39 -0.02 1.63 16
26 H 0.05 1.73 6.17 -2.39 -0.01 1.72 16
27 H 0.07 1.52 7.44 -2.39 -0.02 1.51 16
28 H 0.05 1.62 6.21 -2.39 -0.01 1.60 16
29 H 0.05 2.07 6.16 -2.39 -0.01 2.05 16
30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
31 H 0.40 10.89 8.31 -92.71 -0.77 10.12 16
32 H 0.40 15.37 8.34 -92.71 -0.77 14.59 16
33 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16
34 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16
35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16
36 H 0.17 1.42 5.90 -2.91 -0.02 1.40 16
37 H 0.18 0.08 8.06 -2.91 -0.02 0.05 16
38 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16
Total: -1.00 -74.62 333.19 2.18 -72.44
By element:
Atomic # 1 Polarization: 22.59 SS G_CDS: -0.42 Total: 22.18 kcal
Atomic # 6 Polarization: 8.54 SS G_CDS: 4.53 Total: 13.07 kcal
Atomic # 7 Polarization: -112.49 SS G_CDS: -4.48 Total: -116.97 kcal
Atomic # 8 Polarization: -31.56 SS G_CDS: -0.05 Total: -31.61 kcal
Atomic # 9 Polarization: -3.76 SS G_CDS: 0.64 Total: -3.12 kcal
Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal
Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal
Total: -74.62 2.18 -72.44 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000426418991.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.819 kcal
(2) G-P(sol) polarization free energy of solvation -74.617 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.436 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.260 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds