Wall clock time and date at job start Tue Mar 31 2020 10:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99901 * 2 1 4 4 C 1.46899 * 111.00220 * 123.95553 * 2 1 3 5 5 H 1.09004 * 109.47168 * 299.99909 * 4 2 1 6 6 C 1.50696 * 109.47352 * 180.02562 * 4 2 1 7 7 O 1.21284 * 120.00109 * 339.99995 * 6 4 2 8 8 N 1.34777 * 120.00137 * 160.00210 * 6 4 2 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 4 10 10 C 1.50699 * 109.46928 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99749 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00236 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47160 * 89.99730 * 14 12 10 16 16 H 1.48503 * 109.47061 * 209.99752 * 14 12 10 17 17 H 1.48500 * 109.46598 * 329.99398 * 14 12 10 18 18 C 1.50706 * 109.47295 * 60.00011 * 4 2 1 19 19 C 1.38462 * 120.01720 * 44.72481 * 18 4 2 20 20 F 1.35101 * 120.01790 * 359.97438 * 19 18 4 21 21 C 1.38438 * 119.96012 * 179.74434 * 19 18 4 22 22 C 1.38221 * 120.00196 * 0.53458 * 21 19 18 23 23 C 1.38209 * 120.03805 * 359.71940 * 22 21 19 24 24 C 1.38285 * 120.01915 * 225.00232 * 18 4 2 25 25 Cl 1.73599 * 120.00266 * 359.97438 * 24 18 4 26 26 H 1.09000 * 109.47103 * 299.99643 * 1 2 3 27 27 H 1.08994 * 109.47209 * 59.99892 * 1 2 3 28 28 H 1.09006 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47114 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47209 * 299.99979 * 3 2 1 31 31 H 1.09003 * 109.46794 * 60.00389 * 3 2 1 32 32 H 0.96999 * 120.00047 * 359.97438 * 8 6 4 33 33 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 34 34 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 35 35 H 0.97001 * 119.99269 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.00073 * 180.25309 * 21 19 18 37 37 H 1.08002 * 119.98485 * 179.69874 * 22 21 19 38 38 H 1.08007 * 119.97779 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6460 -0.3201 2.0688 6 6 3.5019 -0.7430 1.1045 7 8 4.0820 -0.4805 0.0723 8 7 4.2047 -1.0142 2.2222 9 6 5.6692 -0.9913 2.1902 10 6 6.2068 -1.3258 3.5577 11 1 5.5257 -1.5350 4.3693 12 6 7.5681 -1.3658 3.7724 13 7 8.0373 -1.6573 4.9660 14 14 8.7462 -1.0047 2.3683 15 1 9.0449 0.4495 2.3344 16 1 10.0060 -1.7643 2.5715 17 1 8.1241 -1.4125 1.0831 18 6 1.5123 -2.1908 1.0505 19 6 1.5520 -2.8630 -0.1594 20 9 2.0233 -2.2417 -1.2626 21 6 1.1128 -4.1736 -0.2369 22 6 0.6247 -4.8068 0.8907 23 6 0.5803 -4.1342 2.0972 24 6 1.0238 -2.8258 2.1776 25 17 0.9675 -1.9819 3.6936 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.0851 1.3424 -0.0005 30 1 1.6459 1.8948 -0.8900 31 1 1.6459 1.8947 0.8901 32 1 3.7408 -1.2238 3.0478 33 1 6.0284 -1.7252 1.4687 34 1 6.0108 0.0019 1.8988 35 1 8.9950 -1.6850 5.1171 36 1 1.1472 -4.6998 -1.1794 37 1 0.2776 -5.8276 0.8288 38 1 0.1991 -4.6300 2.9778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427648924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:47 Heat of formation + Delta-G solvation = -42.290720 kcal Electronic energy + Delta-G solvation = -24751.226437 eV Core-core repulsion = 20955.776745 eV Total energy + Delta-G solvation = -3795.449692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.63959 -40.18347 -38.70686 -36.66309 -36.60483 -34.27559 -32.53266 -31.94433 -30.55542 -28.64654 -27.45708 -26.88797 -23.18367 -22.83069 -22.65604 -21.15785 -19.75170 -17.88822 -17.44476 -16.85014 -16.39071 -16.19350 -15.53787 -15.31557 -14.98339 -14.73134 -14.49828 -14.43311 -14.07958 -13.69039 -13.39998 -13.28445 -13.00255 -12.66897 -12.42767 -12.26725 -12.20608 -12.09872 -11.73602 -11.50062 -11.46342 -11.36075 -11.00979 -10.93344 -10.72350 -9.97068 -9.56897 -9.47799 -8.87743 -8.77318 -8.69751 -8.30763 -8.13627 -6.20952 -4.23191 0.76466 0.91339 1.84830 3.05776 3.26000 3.28275 3.33449 3.42617 3.53671 4.16799 4.21946 4.33871 4.44706 4.62885 4.73976 4.99292 5.10068 5.14310 5.20457 5.25106 5.32616 5.38427 5.60641 5.63350 5.75185 5.78875 5.83172 5.87590 5.99669 6.19329 6.56833 6.74643 6.89671 7.02071 7.06211 7.20888 7.37927 8.12495 8.49334 8.75073 8.89469 9.38855 10.90949 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.013700 B = 0.005040 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.294648 B = 5554.747665 C = 6105.618330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.515 5.515 3 C 0.018 3.982 4 C 0.103 3.897 5 H 0.078 0.922 6 C 0.507 3.493 7 O -0.525 6.525 8 N -0.702 5.702 9 C 0.222 3.778 10 C -0.543 4.543 11 H 0.080 0.920 12 C 0.079 3.921 13 N -0.892 5.892 14 Si 0.875 3.125 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.260 1.260 18 C -0.113 4.113 19 C 0.152 3.848 20 F -0.103 7.103 21 C -0.161 4.161 22 C -0.074 4.074 23 C -0.126 4.126 24 C -0.001 4.001 25 Cl -0.050 7.050 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.022 0.978 32 H 0.395 0.605 33 H 0.026 0.974 34 H 0.022 0.978 35 H 0.267 0.733 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.738 -3.048 -7.140 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.239 5.239 3 C -0.129 4.129 4 C -0.009 4.009 5 H 0.096 0.904 6 C 0.290 3.710 7 O -0.402 6.402 8 N -0.351 5.351 9 C 0.100 3.900 10 C -0.581 4.581 11 H 0.097 0.903 12 C -0.125 4.125 13 N -0.529 5.529 14 Si 0.701 3.299 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.116 4.116 19 C 0.132 3.868 20 F -0.080 7.080 21 C -0.180 4.180 22 C -0.093 4.093 23 C -0.145 4.145 24 C -0.029 4.029 25 Cl -0.021 7.021 26 H 0.045 0.955 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.229 0.771 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.924 -2.987 -8.109 20.804 hybrid contribution 0.288 0.603 0.609 0.905 sum -18.637 -2.383 -7.499 20.230 Atomic orbital electron populations 1.22431 0.87090 1.01957 1.00865 1.61718 1.07215 1.14546 1.40444 1.22567 1.03194 0.87036 1.00150 1.20561 0.94435 0.90788 0.95147 0.90410 1.19956 0.87826 0.78654 0.84596 1.90655 1.70736 1.48065 1.30734 1.46224 1.09344 1.68470 1.11054 1.19521 0.75235 0.96857 0.98417 1.21072 0.93053 1.49719 0.94229 0.90251 1.24778 0.97981 0.93988 0.95741 1.69885 1.13934 1.47800 1.21262 0.86841 0.80650 0.79067 0.83312 1.19814 1.20853 1.18454 1.19332 1.03763 0.96273 0.92193 1.17281 0.96046 0.90500 0.82994 1.91653 1.84790 1.82193 1.49399 1.21310 1.02302 0.93443 1.00936 1.20965 0.97200 1.00008 0.91087 1.21041 1.01722 0.92366 0.99325 1.20589 1.01587 0.93757 0.86939 1.98398 1.96846 1.77490 1.29361 0.95483 0.90822 0.91744 0.89173 0.91040 0.95973 0.77134 0.95600 0.96027 0.92269 0.84013 0.84012 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.31 60.07 0.56 0.85 16 2 N -0.52 -7.75 3.25 -245.99 -0.80 -8.55 16 3 C 0.02 0.26 9.19 60.07 0.55 0.81 16 4 C 0.10 1.65 1.75 -70.02 -0.12 1.52 16 5 H 0.08 1.17 6.37 -51.93 -0.33 0.84 16 6 C 0.51 10.30 6.14 -10.99 -0.07 10.23 16 7 O -0.53 -12.25 14.71 5.55 0.08 -12.17 16 8 N -0.70 -15.11 5.55 -61.47 -0.34 -15.45 16 9 C 0.22 5.59 4.50 -5.19 -0.02 5.56 16 10 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16 11 H 0.08 2.31 7.84 -52.48 -0.41 1.90 16 12 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 13 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 14 Si 0.88 21.62 27.47 -169.99 -4.67 16.96 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 18 C -0.11 -1.65 3.58 -104.52 -0.37 -2.02 16 19 C 0.15 2.19 6.43 -39.42 -0.25 1.94 16 20 F -0.10 -1.73 15.76 2.25 0.04 -1.69 16 21 C -0.16 -1.76 10.03 -39.51 -0.40 -2.16 16 22 C -0.07 -0.67 10.04 -39.60 -0.40 -1.07 16 23 C -0.13 -1.28 9.83 -39.54 -0.39 -1.66 16 24 C 0.00 -0.02 6.31 -39.51 -0.25 -0.27 16 25 Cl -0.05 -0.62 27.06 -51.86 -1.40 -2.03 16 26 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.74 6.56 -51.93 -0.34 0.39 16 29 H 0.09 1.58 5.68 -51.93 -0.29 1.28 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.40 7.86 8.31 -40.82 -0.34 7.52 16 33 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 34 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -32.55 335.49 -7.47 -40.03 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.61 Total: 3.23 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.60 Total: 0.44 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.37 Total: -49.81 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.40 Total: -2.03 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.55 -7.47 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427648924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.264 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds