Wall clock time and date at job start Tue Mar 31 2020 10:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99901 * 2 1 4 4 C 1.46899 * 111.00220 * 123.95553 * 2 1 3 5 5 H 1.09004 * 109.47168 * 299.99909 * 4 2 1 6 6 C 1.50696 * 109.47352 * 180.02562 * 4 2 1 7 7 O 1.21284 * 120.00109 * 339.99995 * 6 4 2 8 8 N 1.34777 * 120.00137 * 160.00210 * 6 4 2 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 4 10 10 C 1.50699 * 109.46928 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99749 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00236 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47160 * 89.99730 * 14 12 10 16 16 H 1.48503 * 109.47061 * 209.99752 * 14 12 10 17 17 H 1.48500 * 109.46598 * 329.99398 * 14 12 10 18 18 C 1.50706 * 109.47295 * 60.00011 * 4 2 1 19 19 C 1.38462 * 120.01720 * 44.72481 * 18 4 2 20 20 F 1.35101 * 120.01790 * 359.97438 * 19 18 4 21 21 C 1.38438 * 119.96012 * 179.74434 * 19 18 4 22 22 C 1.38221 * 120.00196 * 0.53458 * 21 19 18 23 23 C 1.38209 * 120.03805 * 359.71940 * 22 21 19 24 24 C 1.38285 * 120.01915 * 225.00232 * 18 4 2 25 25 Cl 1.73599 * 120.00266 * 359.97438 * 24 18 4 26 26 H 1.09000 * 109.47103 * 299.99643 * 1 2 3 27 27 H 1.08994 * 109.47209 * 59.99892 * 1 2 3 28 28 H 1.09006 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47114 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47209 * 299.99979 * 3 2 1 31 31 H 1.09003 * 109.46794 * 60.00389 * 3 2 1 32 32 H 0.96999 * 120.00047 * 359.97438 * 8 6 4 33 33 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 34 34 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 35 35 H 0.97001 * 119.99269 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.00073 * 180.25309 * 21 19 18 37 37 H 1.08002 * 119.98485 * 179.69874 * 22 21 19 38 38 H 1.08007 * 119.97779 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6460 -0.3201 2.0688 6 6 3.5019 -0.7430 1.1045 7 8 4.0820 -0.4805 0.0723 8 7 4.2047 -1.0142 2.2222 9 6 5.6692 -0.9913 2.1902 10 6 6.2068 -1.3258 3.5577 11 1 5.5257 -1.5350 4.3693 12 6 7.5681 -1.3658 3.7724 13 7 8.0373 -1.6573 4.9660 14 14 8.7462 -1.0047 2.3683 15 1 9.0449 0.4495 2.3344 16 1 10.0060 -1.7643 2.5715 17 1 8.1241 -1.4125 1.0831 18 6 1.5123 -2.1908 1.0505 19 6 1.5520 -2.8630 -0.1594 20 9 2.0233 -2.2417 -1.2626 21 6 1.1128 -4.1736 -0.2369 22 6 0.6247 -4.8068 0.8907 23 6 0.5803 -4.1342 2.0972 24 6 1.0238 -2.8258 2.1776 25 17 0.9675 -1.9819 3.6936 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.0851 1.3424 -0.0005 30 1 1.6459 1.8948 -0.8900 31 1 1.6459 1.8947 0.8901 32 1 3.7408 -1.2238 3.0478 33 1 6.0284 -1.7252 1.4687 34 1 6.0108 0.0019 1.8988 35 1 8.9950 -1.6850 5.1171 36 1 1.1472 -4.6998 -1.1794 37 1 0.2776 -5.8276 0.8288 38 1 0.1991 -4.6300 2.9778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427648924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:47 Heat of formation + Delta-G solvation = -64.406761 kcal Electronic energy + Delta-G solvation = -24752.185461 eV Core-core repulsion = 20955.776745 eV Total energy + Delta-G solvation = -3796.408715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.75325 -41.47084 -39.91120 -37.87448 -37.58054 -36.16656 -34.49825 -33.11565 -31.43610 -30.36159 -28.66139 -28.16758 -24.62015 -23.97377 -23.75950 -22.67886 -21.30068 -19.37380 -18.68770 -18.14679 -17.80067 -17.48883 -16.99999 -16.61871 -16.18245 -16.10607 -15.78706 -15.66458 -15.44695 -15.23334 -14.62113 -14.55200 -14.28903 -14.21626 -14.00420 -13.65800 -13.22638 -13.17511 -13.07788 -12.77923 -12.64750 -12.56964 -12.42219 -12.37104 -11.95789 -11.91043 -11.70142 -11.02790 -10.94071 -10.02500 -9.89164 -9.70014 -9.39590 -8.42228 -6.49726 -0.13669 0.00561 0.91203 1.30344 1.32574 1.45405 1.53929 2.11580 2.26032 2.36699 2.91871 2.93158 3.25514 3.37792 3.70917 3.75729 3.88733 4.05630 4.21241 4.27059 4.34655 4.39900 4.58440 4.60531 4.70983 4.86868 4.90985 4.96222 4.96789 4.99757 5.08509 5.19109 5.20211 5.41644 5.67924 5.75300 5.97294 6.05655 6.48903 6.71020 7.10767 7.26966 8.72504 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.013700 B = 0.005040 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.294648 B = 5554.747665 C = 6105.618330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.532 5.532 3 C 0.020 3.980 4 C 0.115 3.885 5 H 0.085 0.915 6 C 0.507 3.493 7 O -0.558 6.558 8 N -0.705 5.705 9 C 0.235 3.765 10 C -0.548 4.548 11 H 0.057 0.943 12 C 0.031 3.969 13 N -0.928 5.928 14 Si 0.935 3.065 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.263 1.263 18 C -0.134 4.134 19 C 0.121 3.879 20 F -0.126 7.126 21 C -0.156 4.156 22 C -0.057 4.057 23 C -0.119 4.119 24 C -0.013 4.013 25 Cl -0.056 7.056 26 H 0.038 0.962 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.402 0.598 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.273 0.727 36 H 0.164 0.836 37 H 0.186 0.814 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.393 -4.326 -7.807 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.257 5.257 3 C -0.127 4.127 4 C 0.004 3.996 5 H 0.103 0.897 6 C 0.292 3.708 7 O -0.437 6.437 8 N -0.355 5.355 9 C 0.111 3.889 10 C -0.586 4.586 11 H 0.075 0.925 12 C -0.170 4.170 13 N -0.566 5.566 14 Si 0.759 3.241 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.187 1.187 18 C -0.137 4.137 19 C 0.100 3.900 20 F -0.105 7.105 21 C -0.175 4.175 22 C -0.075 4.075 23 C -0.138 4.138 24 C -0.040 4.040 25 Cl -0.026 7.026 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.237 0.763 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.182 0.818 37 H 0.203 0.797 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.616 -4.264 -8.764 22.804 hybrid contribution 0.703 0.924 0.852 1.440 sum -19.913 -3.340 -7.913 21.686 Atomic orbital electron populations 1.22464 0.84774 1.02531 1.02106 1.61715 1.09266 1.14495 1.40193 1.22506 1.01004 0.87471 1.01752 1.20365 0.90692 0.92647 0.95935 0.89740 1.20726 0.89850 0.76892 0.83334 1.90628 1.72069 1.49189 1.31797 1.46103 1.07999 1.69220 1.12135 1.19130 0.77582 0.95781 0.96384 1.21218 0.93103 1.49496 0.94737 0.92479 1.25552 0.99656 0.93737 0.98031 1.69979 1.14731 1.48817 1.23086 0.85894 0.78800 0.79461 0.79987 1.18812 1.19483 1.18709 1.19282 1.05655 0.95525 0.93237 1.17693 0.97847 0.92005 0.82408 1.91587 1.85513 1.82882 1.50472 1.21662 1.01026 0.92020 1.02747 1.21487 0.94922 1.01476 0.89608 1.21480 1.00214 0.91207 1.00895 1.20772 1.02292 0.94745 0.86185 1.98395 1.96891 1.77845 1.29513 0.94388 0.89264 0.91536 0.92700 0.89100 0.94696 0.76284 0.97003 0.96764 0.91739 0.81800 0.79652 0.81344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.31 127.69 1.19 1.81 16 2 N -0.53 -15.83 3.25 -932.19 -3.03 -18.86 16 3 C 0.02 0.59 9.19 127.69 1.17 1.76 16 4 C 0.12 3.70 1.75 43.42 0.08 3.78 16 5 H 0.09 2.53 6.37 -2.39 -0.02 2.51 16 6 C 0.51 21.05 6.14 87.66 0.54 21.59 16 7 O -0.56 -26.88 14.71 -3.04 -0.04 -26.92 16 8 N -0.70 -31.07 5.55 -466.77 -2.59 -33.66 16 9 C 0.23 12.07 4.50 85.63 0.38 12.46 16 10 C -0.55 -31.13 9.83 25.60 0.25 -30.88 16 11 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 12 C 0.03 1.78 5.47 84.65 0.46 2.24 16 13 N -0.93 -55.80 13.96 21.45 0.30 -55.50 16 14 Si 0.94 44.76 27.47 68.60 1.88 46.65 16 15 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.26 -12.60 6.54 99.48 0.65 -11.95 16 18 C -0.13 -3.82 3.58 -19.80 -0.07 -3.89 16 19 C 0.12 3.36 6.43 22.37 0.14 3.50 16 20 F -0.13 -4.29 15.76 44.97 0.71 -3.58 16 21 C -0.16 -2.99 10.03 22.31 0.22 -2.76 16 22 C -0.06 -0.80 10.04 22.26 0.22 -0.57 16 23 C -0.12 -2.03 9.83 22.30 0.22 -1.81 16 24 C -0.01 -0.30 6.31 22.32 0.14 -0.16 16 25 Cl -0.06 -1.33 27.06 -2.72 -0.07 -1.40 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.43 6.56 -2.38 -0.02 1.41 16 29 H 0.05 1.98 5.68 -2.38 -0.01 1.96 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.40 16.39 8.31 -92.71 -0.77 15.62 16 33 H 0.01 0.65 7.20 -2.38 -0.02 0.63 16 34 H 0.01 0.76 7.57 -2.39 -0.02 0.74 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -72.20 335.49 2.39 -69.81 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.27 Total: 16.38 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 4.96 Total: 7.08 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -5.32 Total: -108.01 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.04 Total: -26.92 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.71 Total: -3.58 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.65 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.07 Total: -1.40 kcal Total: -72.20 2.39 -69.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427648924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.404 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds