Wall clock time and date at job start Tue Mar 31 2020 10:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99996 * 2 1 4 4 N 1.46500 * 109.47061 * 125.00403 * 3 2 1 5 5 C 1.46507 * 119.99774 * 270.00136 * 4 3 2 6 6 C 1.50706 * 109.46627 * 269.99559 * 5 4 3 7 7 H 1.07994 * 119.99896 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99562 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00071 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99795 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46868 * 59.99760 * 10 8 6 12 12 H 1.48491 * 109.47247 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47192 * 299.99859 * 10 8 6 14 14 C 1.34776 * 120.00311 * 89.99411 * 4 3 2 15 15 O 1.21595 * 120.00016 * 179.97438 * 14 4 3 16 16 N 1.34776 * 119.99933 * 0.02562 * 14 4 3 17 17 C 1.40186 * 120.00095 * 184.43239 * 16 14 4 18 18 C 1.38785 * 120.04263 * 325.34629 * 17 16 14 19 19 C 1.38317 * 119.95563 * 180.02562 * 18 17 16 20 20 F 1.35093 * 119.98116 * 179.97438 * 19 18 17 21 21 C 1.38681 * 120.03946 * 359.73828 * 19 18 17 22 22 F 1.35095 * 119.95830 * 180.27609 * 21 19 18 23 23 C 1.38407 * 120.07938 * 0.51509 * 21 19 18 24 24 C 1.38329 * 120.04788 * 359.48848 * 23 21 19 25 25 F 1.35097 * 120.01952 * 180.27736 * 24 23 21 26 26 H 1.08005 * 119.99722 * 359.97438 * 1 2 3 27 27 H 1.07991 * 120.00247 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99705 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47503 * 5.00435 * 3 2 1 30 30 H 1.09002 * 109.47361 * 244.99876 * 3 2 1 31 31 H 1.08995 * 109.47499 * 29.99385 * 5 4 3 32 32 H 1.09005 * 109.46971 * 150.00220 * 5 4 3 33 33 H 0.97001 * 119.99845 * 180.02562 * 9 8 6 34 34 H 0.97001 * 119.99686 * 4.43843 * 16 14 4 35 35 H 1.08001 * 120.01993 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.97440 * 179.76249 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8444 3.3435 2.4804 7 1 3.3035 3.8369 1.6365 8 6 2.5196 4.0664 3.6087 9 7 1.9601 3.4656 4.6362 10 14 2.8728 5.8994 3.6773 11 1 2.1360 6.5866 2.5863 12 1 2.4321 6.4397 4.9884 13 1 4.3305 6.1292 3.5115 14 6 4.2497 0.8660 0.9823 15 8 5.0220 0.8886 1.9213 16 7 4.6499 0.3760 -0.2077 17 6 5.9242 -0.1934 -0.3385 18 6 6.9918 0.3187 0.3854 19 6 8.2485 -0.2442 0.2546 20 9 9.2881 0.2542 0.9586 21 6 8.4408 -1.3230 -0.5953 22 9 9.6677 -1.8751 -0.7177 23 6 7.3784 -1.8317 -1.3221 24 6 6.1201 -1.2714 -1.1939 25 9 5.0824 -1.7719 -1.8993 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6214 1.4026 -0.9314 31 1 1.4889 1.6966 2.5460 32 1 3.0991 1.3601 3.2260 33 1 1.7312 3.9742 5.4298 34 1 4.0562 0.4175 -0.9737 35 1 6.8416 1.1567 1.0499 36 1 7.5309 -2.6695 -1.9863 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432790511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:33 Heat of formation + Delta-G solvation = -117.867222 kcal Electronic energy + Delta-G solvation = -25812.401559 eV Core-core repulsion = 21461.877944 eV Total energy + Delta-G solvation = -4350.523615 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.61284 -50.12822 -49.68397 -41.82378 -39.65158 -37.38418 -35.99685 -34.96069 -33.76036 -31.76947 -30.62595 -29.14163 -27.01127 -25.49927 -24.60808 -23.57739 -21.57413 -20.89600 -19.90558 -19.33245 -18.98954 -18.66562 -18.33297 -17.73062 -17.56432 -16.91747 -16.72048 -16.46231 -16.34598 -16.08149 -15.97998 -15.73026 -15.61547 -15.21985 -14.89918 -14.60233 -14.35602 -14.15888 -13.64964 -13.31586 -13.21445 -13.04670 -12.96102 -12.82390 -12.57580 -12.27491 -12.19995 -11.71492 -11.50673 -11.13036 -10.62619 -10.35585 -10.12703 -9.67217 -9.21904 -8.20895 -6.35171 -0.46891 -0.29727 1.18453 1.38832 1.42308 1.49299 1.58905 1.83456 2.21289 2.39449 2.50568 2.79687 2.86239 3.09718 3.16899 3.33686 3.75116 3.99095 4.08216 4.18891 4.31343 4.37790 4.51951 4.67363 4.77495 4.82205 4.92191 5.03910 5.12001 5.21613 5.46587 5.58073 5.67873 5.71714 5.84079 5.94277 6.05721 6.73026 6.86805 7.30040 7.47669 8.85782 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.013360 B = 0.004235 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.296186 B = 6610.535359 C = 8343.165362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.189 4.189 3 C 0.132 3.868 4 N -0.602 5.602 5 C 0.280 3.720 6 C -0.543 4.543 7 H 0.055 0.945 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.964 3.036 11 H -0.260 1.260 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.698 3.302 15 O -0.610 6.610 16 N -0.672 5.672 17 C 0.158 3.842 18 C -0.121 4.121 19 C 0.073 3.927 20 F -0.132 7.132 21 C 0.078 3.922 22 F -0.122 7.122 23 C -0.116 4.116 24 C 0.100 3.900 25 F -0.116 7.116 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.029 0.971 32 H 0.001 0.999 33 H 0.267 0.733 34 H 0.424 0.576 35 H 0.146 0.854 36 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 -10.671 -17.287 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.208 4.208 3 C 0.010 3.990 4 N -0.335 5.335 5 C 0.159 3.841 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.187 4.187 9 N -0.566 5.566 10 Si 0.788 3.212 11 H -0.185 1.185 12 H -0.206 1.206 13 H -0.205 1.205 14 C 0.400 3.600 15 O -0.490 6.490 16 N -0.323 5.323 17 C 0.060 3.940 18 C -0.143 4.143 19 C 0.052 3.948 20 F -0.111 7.111 21 C 0.057 3.943 22 F -0.101 7.101 23 C -0.135 4.135 24 C 0.077 3.923 25 F -0.095 7.095 26 H 0.120 0.880 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.047 0.953 32 H 0.019 0.981 33 H 0.076 0.924 34 H 0.265 0.735 35 H 0.164 0.836 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.042 -10.578 -16.395 20.152 hybrid contribution 0.044 1.029 0.455 1.126 sum 5.087 -9.549 -15.940 19.265 Atomic orbital electron populations 1.24071 0.95445 1.03033 0.97445 1.23289 0.96932 0.97991 1.02624 1.20832 0.92859 0.96954 0.88366 1.47438 1.09509 1.62296 1.14214 1.18695 0.94080 0.92486 0.78830 1.21678 1.40718 0.94378 1.01399 0.92661 1.25776 0.94673 1.03401 0.94878 1.70037 1.42693 1.38104 1.05757 0.85527 0.78407 0.79415 0.77814 1.18482 1.20571 1.20505 1.16025 0.83027 0.78516 0.82464 1.90883 1.53880 1.63072 1.41127 1.42545 1.15136 1.62716 1.11901 1.17321 0.84991 0.93398 0.98340 1.20986 0.89212 1.02270 1.01794 1.17534 0.84871 0.96207 0.96155 1.91521 1.55982 1.86708 1.76864 1.17126 0.82072 0.94769 1.00379 1.91549 1.39600 1.84104 1.94811 1.20941 0.88182 1.02842 1.01579 1.16839 0.85533 0.93127 0.96775 1.91553 1.55833 1.85939 1.76158 0.87962 0.86610 0.87198 0.89381 0.88297 0.95342 0.98059 0.92427 0.73454 0.83628 0.78220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 14.32 67.78 0.97 -2.59 16 2 C -0.19 -4.70 9.85 25.64 0.25 -4.45 16 3 C 0.13 3.80 5.65 85.63 0.48 4.29 16 4 N -0.60 -24.26 2.44 -848.54 -2.07 -26.33 16 5 C 0.28 14.53 5.16 85.63 0.44 14.97 16 6 C -0.54 -30.17 9.39 25.60 0.24 -29.93 16 7 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.68 5.46 84.66 0.46 1.14 16 9 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 10 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 11 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 C 0.70 28.07 8.12 179.05 1.45 29.52 16 15 O -0.61 -30.27 13.34 -4.02 -0.05 -30.33 16 16 N -0.67 -19.51 5.11 -316.94 -1.62 -21.13 16 17 C 0.16 4.28 6.32 38.12 0.24 4.52 16 18 C -0.12 -3.74 8.67 22.42 0.19 -3.54 16 19 C 0.07 2.01 7.30 22.39 0.16 2.18 16 20 F -0.13 -4.00 17.18 44.97 0.77 -3.23 16 21 C 0.08 1.69 7.30 22.42 0.16 1.85 16 22 F -0.12 -2.66 17.18 44.97 0.77 -1.88 16 23 C -0.12 -1.92 10.00 22.33 0.22 -1.69 16 24 C 0.10 2.02 7.31 22.47 0.16 2.19 16 25 F -0.12 -2.14 16.95 44.97 0.76 -1.38 16 26 H 0.10 2.21 7.84 -2.91 -0.02 2.18 16 27 H 0.12 2.09 8.06 -2.92 -0.02 2.06 16 28 H 0.11 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.09 2.66 7.72 -2.39 -0.02 2.64 16 30 H 0.10 2.15 6.30 -2.39 -0.02 2.14 16 31 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 32 H 0.00 0.08 7.42 -2.38 -0.02 0.06 16 33 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.42 9.42 6.36 -92.71 -0.59 8.83 16 35 H 0.15 5.54 6.19 -2.91 -0.02 5.53 16 36 H 0.20 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -69.11 331.38 6.89 -62.22 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.56 Total: 12.14 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 5.46 Total: 18.44 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -3.40 Total: -101.99 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.05 Total: -30.33 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 2.31 Total: -6.49 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.11 6.89 -62.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432790511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.643 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds