Wall clock time and date at job start Tue Mar 31 2020 10:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99974 * 2 1 4 4 N 1.46504 * 109.47347 * 124.99859 * 3 2 1 5 5 C 1.46505 * 119.99909 * 270.27877 * 4 3 2 6 6 C 1.50697 * 109.46851 * 269.72043 * 5 4 3 7 7 H 1.08000 * 120.00225 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99905 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00003 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00084 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47178 * 59.99437 * 10 8 6 12 12 H 1.48501 * 109.47133 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46671 * 299.99618 * 10 8 6 14 14 C 1.34780 * 119.99635 * 89.99887 * 4 3 2 15 15 O 1.21590 * 119.99469 * 180.02562 * 14 4 3 16 16 N 1.34776 * 120.00077 * 0.02562 * 14 4 3 17 17 C 1.40051 * 119.99607 * 174.63964 * 16 14 4 18 18 C 1.38819 * 120.02750 * 326.55673 * 17 16 14 19 19 C 1.38338 * 119.97514 * 179.74381 * 18 17 16 20 20 F 1.35105 * 119.98744 * 180.27477 * 19 18 17 21 21 C 1.38620 * 120.02638 * 0.50660 * 19 18 17 22 22 F 1.35098 * 119.97562 * 179.74524 * 21 19 18 23 23 C 1.38613 * 120.04472 * 359.76940 * 21 19 18 24 24 F 1.35105 * 119.98709 * 179.97438 * 23 21 19 25 25 C 1.38338 * 120.02709 * 359.97438 * 23 21 19 26 26 H 1.07991 * 119.99879 * 180.02562 * 1 2 3 27 27 H 1.08007 * 119.99793 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00339 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47084 * 4.99912 * 3 2 1 30 30 H 1.08994 * 109.47116 * 245.00213 * 3 2 1 31 31 H 1.08999 * 109.47161 * 29.72245 * 5 4 3 32 32 H 1.08997 * 109.46618 * 149.72248 * 5 4 3 33 33 H 0.96993 * 120.00309 * 180.02562 * 9 8 6 34 34 H 0.96990 * 119.99967 * 354.63535 * 16 14 4 35 35 H 1.08003 * 120.00905 * 359.97438 * 18 17 16 36 36 H 1.08004 * 120.01100 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 2.5570 1.8595 2.4266 6 6 2.8431 3.3377 2.4892 7 1 3.3038 3.8347 1.6483 8 6 2.5166 4.0557 3.6201 9 7 1.9552 3.4507 4.6439 10 14 2.8706 5.8883 3.6975 11 1 2.1361 6.5807 2.6083 12 1 2.4279 6.4229 5.0103 13 1 4.3288 6.1180 3.5351 14 6 4.2498 0.8662 0.9824 15 8 5.0217 0.8881 1.9216 16 7 4.6500 0.3763 -0.2077 17 6 5.9849 -0.0033 -0.3954 18 6 7.0008 0.6857 0.2529 19 6 8.3187 0.3065 0.0708 20 9 9.3072 0.9734 0.7060 21 6 8.6258 -0.7544 -0.7668 22 9 9.9136 -1.1206 -0.9479 23 6 7.6126 -1.4395 -1.4191 24 9 7.9133 -2.4730 -2.2357 25 6 6.2937 -1.0654 -1.2344 26 1 -0.5399 -0.9352 0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 1.4866 1.6912 2.5451 32 1 3.0955 1.3509 3.2262 33 1 1.7252 3.9558 5.4393 34 1 4.0135 0.2865 -0.9340 35 1 6.7620 1.5152 0.9021 36 1 5.5045 -1.5990 -1.7431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432955571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:36 Heat of formation + Delta-G solvation = -101.007800 kcal Electronic energy + Delta-G solvation = -25608.993394 eV Core-core repulsion = 21259.200858 eV Total energy + Delta-G solvation = -4349.792536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.77171 -49.22941 -48.44694 -40.57782 -38.49558 -35.96785 -34.54409 -33.25704 -32.22866 -30.66764 -29.47504 -27.51147 -25.69190 -23.83806 -23.49472 -22.28931 -20.30263 -19.77999 -18.82412 -17.95225 -17.77276 -17.37962 -16.77763 -16.60061 -16.22002 -15.91009 -15.51914 -15.19315 -15.01853 -14.92748 -14.82407 -14.53101 -14.35061 -14.17734 -13.55152 -13.11680 -12.93277 -12.76696 -12.44663 -12.10768 -11.91395 -11.75997 -11.40305 -11.21528 -10.99832 -10.67059 -10.27654 -10.18788 -9.80259 -9.60006 -9.36291 -9.03980 -8.50608 -8.33950 -7.86594 -6.12059 -4.17595 0.61319 0.67519 2.24983 2.71217 2.97853 3.27254 3.32682 3.34847 3.38803 3.63911 4.07197 4.07936 4.21343 4.36938 4.40896 4.78112 4.88196 5.04714 5.21524 5.23242 5.34874 5.35134 5.54777 5.66609 5.84825 5.96986 6.01081 6.26247 6.50708 6.64073 6.69395 6.77649 7.19367 7.31979 7.45741 7.83820 8.12075 8.29887 8.79909 8.96272 9.47913 10.95916 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.003960 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.706976 B = 7069.364875 C = 8752.185601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.177 4.177 3 C 0.134 3.866 4 N -0.596 5.596 5 C 0.261 3.739 6 C -0.531 4.531 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.696 3.304 15 O -0.560 6.560 16 N -0.690 5.690 17 C 0.238 3.762 18 C -0.142 4.142 19 C 0.125 3.875 20 F -0.117 7.117 21 C 0.000 4.000 22 F -0.123 7.123 23 C 0.120 3.880 24 F -0.121 7.121 25 C -0.178 4.178 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.265 0.735 34 H 0.409 0.591 35 H 0.171 0.829 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 -8.824 -14.668 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.197 4.197 3 C 0.010 3.990 4 N -0.330 5.330 5 C 0.142 3.858 6 C -0.570 4.570 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.398 3.602 15 O -0.435 6.435 16 N -0.340 5.340 17 C 0.139 3.861 18 C -0.164 4.164 19 C 0.103 3.897 20 F -0.095 7.095 21 C -0.022 4.022 22 F -0.102 7.102 23 C 0.099 3.901 24 F -0.099 7.099 25 C -0.200 4.200 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.247 0.753 35 H 0.189 0.811 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.990 -8.701 -13.697 16.710 hybrid contribution 0.219 0.748 -0.289 0.831 sum 4.210 -7.953 -13.986 16.630 Atomic orbital electron populations 1.23858 0.95814 1.01971 0.99497 1.23425 0.96603 0.98785 1.00863 1.20602 0.93287 0.95973 0.89152 1.47650 1.08676 1.62177 1.14458 1.19302 0.95422 0.93788 0.77260 1.21373 1.41016 0.93256 1.01386 0.92422 1.24912 0.94917 0.98776 0.95268 1.69912 1.41591 1.36393 1.05238 0.86560 0.78887 0.84763 0.77219 1.20249 1.21142 1.20124 1.15956 0.83659 0.78755 0.81794 1.90950 1.52833 1.61078 1.38638 1.43085 1.08014 1.67505 1.15377 1.16808 0.84165 0.91094 0.94068 1.21306 0.88588 1.03089 1.03382 1.17066 0.85943 0.92020 0.94637 1.91572 1.59867 1.78577 1.79478 1.17425 0.79450 1.00107 1.05201 1.91524 1.33386 1.90948 1.94322 1.16810 0.91871 0.87895 0.93484 1.91551 1.93815 1.54964 1.69575 1.20676 0.94937 0.98862 1.05542 0.88619 0.88121 0.87710 0.88701 0.91298 0.94547 0.93590 0.92541 0.75297 0.81144 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 14.32 29.01 0.42 -1.51 16 2 C -0.18 -2.12 9.85 -36.02 -0.35 -2.48 16 3 C 0.13 1.85 5.56 -5.19 -0.03 1.82 16 4 N -0.60 -11.27 2.44 -182.18 -0.44 -11.71 16 5 C 0.26 6.34 5.16 -5.19 -0.03 6.32 16 6 C -0.53 -14.17 9.39 -34.44 -0.32 -14.50 16 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 10 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.70 13.01 8.01 -86.92 -0.70 12.32 16 15 O -0.56 -12.88 13.62 5.29 0.07 -12.80 16 16 N -0.69 -9.20 5.18 -14.22 -0.07 -9.28 16 17 C 0.24 3.08 6.28 -83.67 -0.53 2.56 16 18 C -0.14 -2.11 8.63 -39.33 -0.34 -2.45 16 19 C 0.12 1.76 7.30 -39.40 -0.29 1.48 16 20 F -0.12 -1.76 17.18 2.25 0.04 -1.72 16 21 C 0.00 0.00 7.31 -39.30 -0.29 -0.28 16 22 F -0.12 -1.71 17.09 2.25 0.04 -1.68 16 23 C 0.12 1.41 7.30 -39.41 -0.29 1.12 16 24 F -0.12 -1.40 17.18 2.25 0.04 -1.36 16 25 C -0.18 -1.85 9.94 -39.33 -0.39 -2.24 16 26 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 27 H 0.10 1.10 7.84 -52.48 -0.41 0.69 16 28 H 0.10 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.09 1.39 7.73 -51.93 -0.40 0.99 16 30 H 0.07 0.73 6.45 -51.93 -0.33 0.40 16 31 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.41 4.01 6.63 -40.82 -0.27 3.74 16 35 H 0.17 2.96 6.42 -52.48 -0.34 2.62 16 36 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -30.79 332.18 -6.21 -37.00 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.37 Total: 1.49 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.23 Total: 3.80 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.22 Total: -45.79 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.12 Total: -4.76 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.79 -6.21 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432955571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.003 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds