Wall clock time and date at job start Tue Mar 31 2020 10:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99974 * 2 1 4 4 N 1.46504 * 109.47347 * 124.99859 * 3 2 1 5 5 C 1.46505 * 119.99909 * 270.27877 * 4 3 2 6 6 C 1.50697 * 109.46851 * 269.72043 * 5 4 3 7 7 H 1.08000 * 120.00225 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99905 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00003 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00084 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47178 * 59.99437 * 10 8 6 12 12 H 1.48501 * 109.47133 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46671 * 299.99618 * 10 8 6 14 14 C 1.34780 * 119.99635 * 89.99887 * 4 3 2 15 15 O 1.21590 * 119.99469 * 180.02562 * 14 4 3 16 16 N 1.34776 * 120.00077 * 0.02562 * 14 4 3 17 17 C 1.40051 * 119.99607 * 174.63964 * 16 14 4 18 18 C 1.38819 * 120.02750 * 326.55673 * 17 16 14 19 19 C 1.38338 * 119.97514 * 179.74381 * 18 17 16 20 20 F 1.35105 * 119.98744 * 180.27477 * 19 18 17 21 21 C 1.38620 * 120.02638 * 0.50660 * 19 18 17 22 22 F 1.35098 * 119.97562 * 179.74524 * 21 19 18 23 23 C 1.38613 * 120.04472 * 359.76940 * 21 19 18 24 24 F 1.35105 * 119.98709 * 179.97438 * 23 21 19 25 25 C 1.38338 * 120.02709 * 359.97438 * 23 21 19 26 26 H 1.07991 * 119.99879 * 180.02562 * 1 2 3 27 27 H 1.08007 * 119.99793 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00339 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47084 * 4.99912 * 3 2 1 30 30 H 1.08994 * 109.47116 * 245.00213 * 3 2 1 31 31 H 1.08999 * 109.47161 * 29.72245 * 5 4 3 32 32 H 1.08997 * 109.46618 * 149.72248 * 5 4 3 33 33 H 0.96993 * 120.00309 * 180.02562 * 9 8 6 34 34 H 0.96990 * 119.99967 * 354.63535 * 16 14 4 35 35 H 1.08003 * 120.00905 * 359.97438 * 18 17 16 36 36 H 1.08004 * 120.01100 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 2.5570 1.8595 2.4266 6 6 2.8431 3.3377 2.4892 7 1 3.3038 3.8347 1.6483 8 6 2.5166 4.0557 3.6201 9 7 1.9552 3.4507 4.6439 10 14 2.8706 5.8883 3.6975 11 1 2.1361 6.5807 2.6083 12 1 2.4279 6.4229 5.0103 13 1 4.3288 6.1180 3.5351 14 6 4.2498 0.8662 0.9824 15 8 5.0217 0.8881 1.9216 16 7 4.6500 0.3763 -0.2077 17 6 5.9849 -0.0033 -0.3954 18 6 7.0008 0.6857 0.2529 19 6 8.3187 0.3065 0.0708 20 9 9.3072 0.9734 0.7060 21 6 8.6258 -0.7544 -0.7668 22 9 9.9136 -1.1206 -0.9479 23 6 7.6126 -1.4395 -1.4191 24 9 7.9133 -2.4730 -2.2357 25 6 6.2937 -1.0654 -1.2344 26 1 -0.5399 -0.9352 0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 1.4866 1.6912 2.5451 32 1 3.0955 1.3509 3.2262 33 1 1.7252 3.9558 5.4393 34 1 4.0135 0.2865 -0.9340 35 1 6.7620 1.5152 0.9021 36 1 5.5045 -1.5990 -1.7431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432955571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:36 Heat of formation + Delta-G solvation = -118.582747 kcal Electronic energy + Delta-G solvation = -25609.755501 eV Core-core repulsion = 21259.200858 eV Total energy + Delta-G solvation = -4350.554643 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.83252 -50.28121 -49.52255 -41.88353 -39.70713 -37.33377 -35.88770 -34.92580 -33.71326 -31.70848 -30.75680 -29.17368 -26.97239 -25.40350 -24.61263 -23.68306 -21.53338 -20.89137 -19.95661 -19.14716 -18.88506 -18.69977 -18.43243 -17.83830 -17.50622 -17.05417 -16.65737 -16.56776 -16.30804 -16.01754 -15.99188 -15.88513 -15.67812 -15.42409 -14.86793 -14.47194 -14.13881 -14.11999 -13.82632 -13.32642 -13.28773 -13.05922 -12.90391 -12.78448 -12.56633 -12.24295 -12.18860 -11.69219 -11.39679 -11.15590 -10.61466 -10.31553 -10.08382 -9.67357 -9.25950 -8.19951 -6.33802 -0.44915 -0.35080 1.21637 1.39489 1.42878 1.49603 1.57128 1.84712 2.28533 2.30687 2.41895 2.88921 3.05237 3.09058 3.11516 3.35758 3.77269 3.83781 4.05247 4.23280 4.35117 4.37170 4.53172 4.64413 4.80922 4.88402 4.97517 5.07837 5.13106 5.24819 5.49042 5.57929 5.71548 5.75322 5.90253 5.99623 6.07470 6.74968 6.92812 7.32140 7.51909 8.86656 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.003960 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.706976 B = 7069.364875 C = 8752.185601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.188 4.188 3 C 0.129 3.871 4 N -0.601 5.601 5 C 0.280 3.720 6 C -0.542 4.542 7 H 0.056 0.944 8 C 0.012 3.988 9 N -0.927 5.927 10 Si 0.961 3.039 11 H -0.260 1.260 12 H -0.282 1.282 13 H -0.280 1.280 14 C 0.696 3.304 15 O -0.612 6.612 16 N -0.666 5.666 17 C 0.228 3.772 18 C -0.155 4.155 19 C 0.113 3.887 20 F -0.128 7.128 21 C 0.000 4.000 22 F -0.128 7.128 23 C 0.130 3.870 24 F -0.114 7.114 25 C -0.141 4.141 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.028 0.972 32 H 0.001 0.999 33 H 0.266 0.734 34 H 0.430 0.570 35 H 0.139 0.861 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 -9.648 -17.310 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.207 4.207 3 C 0.008 3.992 4 N -0.334 5.334 5 C 0.159 3.841 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.187 4.187 9 N -0.566 5.566 10 Si 0.786 3.214 11 H -0.185 1.185 12 H -0.207 1.207 13 H -0.206 1.206 14 C 0.398 3.602 15 O -0.491 6.491 16 N -0.318 5.318 17 C 0.130 3.870 18 C -0.177 4.177 19 C 0.092 3.908 20 F -0.107 7.107 21 C -0.022 4.022 22 F -0.107 7.107 23 C 0.108 3.892 24 F -0.092 7.092 25 C -0.162 4.162 26 H 0.133 0.867 27 H 0.117 0.883 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.019 0.981 33 H 0.075 0.925 34 H 0.272 0.728 35 H 0.157 0.843 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.232 -9.547 -16.433 19.277 hybrid contribution 0.458 0.928 0.480 1.141 sum 3.690 -8.619 -15.953 18.504 Atomic orbital electron populations 1.24069 0.95690 1.02886 0.97722 1.23340 0.96843 0.98152 1.02363 1.20876 0.92891 0.96925 0.88557 1.47432 1.09806 1.62066 1.14104 1.18673 0.94047 0.92449 0.78962 1.21687 1.40478 0.94525 1.01346 0.92622 1.25757 0.94749 1.03247 0.94968 1.70029 1.42721 1.38072 1.05808 0.85561 0.78392 0.79634 0.77781 1.18465 1.20681 1.20551 1.16058 0.83001 0.78528 0.82628 1.90924 1.54204 1.62999 1.40932 1.42596 1.08583 1.66490 1.14091 1.16856 0.83263 0.91990 0.94881 1.21108 0.89643 1.03091 1.03850 1.17066 0.85498 0.92770 0.95480 1.91535 1.60255 1.78986 1.79904 1.17524 0.79682 0.99895 1.05110 1.91512 1.33904 1.90919 1.94321 1.16767 0.91770 0.87612 0.93010 1.91580 1.93804 1.54589 1.69257 1.20906 0.95360 0.96811 1.03156 0.86668 0.88326 0.86416 0.89776 0.87633 0.95387 0.98095 0.92473 0.72826 0.84305 0.78465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 14.32 67.78 0.97 -2.31 16 2 C -0.19 -4.05 9.85 25.65 0.25 -3.79 16 3 C 0.13 3.36 5.56 85.63 0.48 3.83 16 4 N -0.60 -22.76 2.44 -848.54 -2.07 -24.83 16 5 C 0.28 14.09 5.16 85.63 0.44 14.54 16 6 C -0.54 -29.54 9.39 25.60 0.24 -29.30 16 7 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 8 C 0.01 0.67 5.46 84.66 0.46 1.14 16 9 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 10 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.70 26.05 8.01 179.05 1.43 27.48 16 15 O -0.61 -29.31 13.62 -4.00 -0.05 -29.36 16 16 N -0.67 -16.43 5.18 -317.16 -1.64 -18.07 16 17 C 0.23 5.50 6.28 38.11 0.24 5.74 16 18 C -0.15 -4.66 8.63 22.43 0.19 -4.47 16 19 C 0.11 3.22 7.30 22.38 0.16 3.39 16 20 F -0.13 -4.02 17.18 44.97 0.77 -3.25 16 21 C 0.00 0.00 7.31 22.45 0.16 0.16 16 22 F -0.13 -3.43 17.09 44.97 0.77 -2.66 16 23 C 0.13 2.62 7.30 22.38 0.16 2.79 16 24 F -0.11 -2.23 17.18 44.97 0.77 -1.46 16 25 C -0.14 -2.38 9.94 22.43 0.22 -2.15 16 26 H 0.12 1.84 8.06 -2.92 -0.02 1.82 16 27 H 0.10 1.99 7.84 -2.91 -0.02 1.96 16 28 H 0.12 2.26 8.06 -2.91 -0.02 2.23 16 29 H 0.08 2.37 7.73 -2.38 -0.02 2.36 16 30 H 0.11 1.91 6.45 -2.39 -0.02 1.89 16 31 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 32 H 0.00 0.05 7.42 -2.39 -0.02 0.04 16 33 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.43 6.83 6.63 -92.72 -0.61 6.22 16 35 H 0.14 5.15 6.42 -2.91 -0.02 5.13 16 36 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -70.32 332.18 6.81 -63.50 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.53 Total: 7.53 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.43 Total: 17.02 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -3.43 Total: -96.93 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 9 Polarization: -9.68 SS G_CDS: 2.31 Total: -7.37 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.32 6.81 -63.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432955571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.079 kcal (2) G-P(sol) polarization free energy of solvation -70.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds