Wall clock time and date at job start Tue Mar 31 2020 10:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46503 * 120.00061 * 2 1 4 4 C 1.50698 * 109.47212 * 270.00420 * 3 2 1 5 5 C 1.38264 * 119.97083 * 270.01598 * 4 3 2 6 6 C 1.38194 * 120.05301 * 180.02562 * 5 4 3 7 7 C 1.38447 * 119.98582 * 359.95563 * 6 5 4 8 8 F 1.35098 * 120.03314 * 180.29640 * 7 6 5 9 9 C 1.38555 * 119.93778 * 0.02622 * 7 6 5 10 10 Cl 1.73602 * 120.02332 * 180.02562 * 9 7 6 11 11 C 1.38218 * 119.96823 * 90.00057 * 4 3 2 12 12 C 1.34770 * 120.00327 * 180.02562 * 2 1 3 13 13 O 1.21593 * 120.00186 * 179.97438 * 12 2 1 14 14 N 1.34774 * 120.00140 * 359.97438 * 12 2 1 15 15 C 1.46504 * 120.00176 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47072 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47235 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99842 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00268 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47136 * 90.00036 * 21 19 17 23 23 H 1.48498 * 109.47260 * 210.00225 * 21 19 17 24 24 H 1.48504 * 109.47171 * 330.00355 * 21 19 17 25 25 H 1.08999 * 109.47684 * 89.99980 * 1 2 3 26 26 H 1.08999 * 109.47242 * 209.99894 * 1 2 3 27 27 H 1.09003 * 109.47620 * 329.99393 * 1 2 3 28 28 H 1.08999 * 109.47541 * 149.99764 * 3 2 1 29 29 H 1.09004 * 109.46746 * 30.00264 * 3 2 1 30 30 H 1.07999 * 119.97540 * 0.02562 * 5 4 3 31 31 H 1.08000 * 120.00964 * 180.02562 * 6 5 4 32 32 H 1.07992 * 119.99809 * 0.02562 * 11 4 3 33 33 H 0.96996 * 119.99642 * 0.02562 * 14 12 2 34 34 H 1.09002 * 109.46983 * 300.00164 * 15 14 12 35 35 H 1.08994 * 109.46868 * 60.00058 * 15 14 12 36 36 H 1.08997 * 109.47220 * 300.00355 * 16 15 14 37 37 H 1.09004 * 109.47231 * 59.99651 * 16 15 14 38 38 H 0.97000 * 119.99915 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 6 3.6007 1.3041 -2.0722 6 6 3.8329 1.7025 -3.3749 7 6 2.9109 2.5019 -4.0288 8 9 3.1341 2.8870 -5.3044 9 6 1.7562 2.9018 -3.3757 10 17 0.5982 3.9036 -4.1938 11 6 1.5266 2.5019 -2.0716 12 6 2.1388 -1.1671 -0.0005 13 8 3.3547 -1.1671 -0.0010 14 7 1.4650 -2.3343 -0.0005 15 6 2.1976 -3.6031 -0.0005 16 6 1.2035 -4.7660 -0.0012 17 6 1.9570 -6.0711 -0.0018 18 1 3.0369 -6.0710 -0.0013 19 6 1.2676 -7.2652 -0.0019 20 7 -0.0476 -7.2652 -0.0020 21 14 2.2016 -8.8828 -0.0020 22 1 2.4490 -9.3116 1.3981 23 1 1.3992 -9.9178 -0.7022 24 1 3.4993 -8.7052 -0.7019 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 3.1498 1.1385 0.5138 29 1 1.6083 2.0284 0.5139 30 1 4.3198 0.6800 -1.5625 31 1 4.7330 1.3896 -3.8832 32 1 0.6271 2.8137 -1.5618 33 1 0.4951 -2.3344 -0.0005 34 1 2.8243 -3.6607 -0.8905 35 1 2.8242 -3.6607 0.8894 36 1 0.5764 -4.7085 0.8885 37 1 0.5771 -4.7081 -0.8914 38 1 -0.5326 -8.1053 -0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433050650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:59 Heat of formation + Delta-G solvation = -76.903990 kcal Electronic energy + Delta-G solvation = -22976.268992 eV Core-core repulsion = 19179.318356 eV Total energy + Delta-G solvation = -3796.950636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.07991 -41.34143 -40.10558 -37.69938 -36.83324 -36.33404 -34.82603 -32.71605 -32.01777 -31.15424 -28.17201 -27.29332 -25.87688 -24.23105 -23.18026 -22.60444 -20.98010 -19.12241 -18.83181 -18.46495 -17.66928 -17.48386 -17.27517 -16.85286 -16.50529 -16.48324 -15.55177 -15.38488 -15.09892 -14.87227 -14.81790 -14.52478 -14.27230 -14.02330 -13.95870 -13.45780 -13.23091 -13.12551 -12.92035 -12.71051 -12.53699 -12.49832 -12.28588 -12.21788 -12.01116 -11.63496 -11.45585 -11.12774 -10.59192 -10.12322 -10.07198 -9.75058 -9.49900 -8.23163 -6.33172 -0.18699 -0.00285 0.90819 1.42721 1.43118 1.54397 1.72606 2.18591 2.38512 2.45226 2.98514 3.11820 3.14920 3.55530 3.67370 3.96244 4.10781 4.24549 4.34083 4.46647 4.54225 4.59532 4.64268 4.76860 4.78072 4.86515 4.88770 4.95158 5.04476 5.29831 5.37054 5.52675 5.57092 5.60835 5.61622 5.80407 5.95316 6.18479 6.80134 7.02375 7.36166 7.60830 8.88747 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.002533 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.856378 B =11051.153154 C =11286.806669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.626 5.626 3 C 0.173 3.827 4 C -0.104 4.104 5 C -0.069 4.069 6 C -0.148 4.148 7 C 0.093 3.907 8 F -0.137 7.137 9 C -0.086 4.086 10 Cl -0.051 7.051 11 C -0.058 4.058 12 C 0.697 3.303 13 O -0.629 6.629 14 N -0.736 5.736 15 C 0.162 3.838 16 C 0.024 3.976 17 C -0.545 4.545 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.267 1.267 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.155 0.845 32 H 0.172 0.828 33 H 0.404 0.596 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.008 0.992 37 H 0.006 0.994 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 24.595 -2.864 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.362 5.362 3 C 0.050 3.950 4 C -0.106 4.106 5 C -0.088 4.088 6 C -0.166 4.166 7 C 0.073 3.927 8 F -0.115 7.115 9 C -0.113 4.113 10 Cl -0.022 7.022 11 C -0.077 4.077 12 C 0.398 3.602 13 O -0.510 6.510 14 N -0.392 5.392 15 C 0.037 3.963 16 C -0.013 4.013 17 C -0.584 4.584 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.788 3.212 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.191 1.191 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.172 0.828 32 H 0.189 0.811 33 H 0.241 0.759 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.383 24.572 -2.970 24.754 hybrid contribution -0.118 -1.010 -0.633 1.198 sum 0.265 23.562 -3.603 23.838 Atomic orbital electron populations 1.22034 0.77485 1.04928 1.02775 1.47091 1.07653 1.03640 1.77809 1.20402 0.99240 0.84215 0.91123 1.20480 0.94080 0.97509 0.98490 1.21310 0.97666 0.96403 0.93441 1.21319 1.00375 0.98974 0.95965 1.17661 0.95361 0.99681 0.80013 1.91511 1.94676 1.89483 1.35873 1.21106 0.92503 1.02064 0.95661 1.98386 1.57663 1.67289 1.78856 1.21096 1.00084 0.95617 0.90941 1.16154 0.85113 0.81251 0.77699 1.90834 1.13217 1.86955 1.60038 1.45413 1.10446 1.04632 1.78704 1.21036 0.94538 0.81204 0.99506 1.19114 0.94241 0.91749 0.96202 1.21465 0.93599 0.91905 1.51416 0.92293 1.25856 0.95786 1.03035 0.94455 1.70055 1.07511 1.27960 1.51076 0.85464 0.78641 0.78528 0.78536 1.19713 1.20600 1.19090 0.92180 0.91386 0.87060 0.89679 0.85068 0.84699 0.82769 0.81080 0.75885 0.94065 0.93715 0.97321 0.97571 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.24 127.77 1.31 2.29 16 2 N -0.63 -13.41 2.86 -869.34 -2.48 -15.89 16 3 C 0.17 2.84 5.57 85.63 0.48 3.32 16 4 C -0.10 -1.85 5.46 -19.86 -0.11 -1.96 16 5 C -0.07 -1.49 9.70 22.27 0.22 -1.27 16 6 C -0.15 -3.04 10.03 22.31 0.22 -2.82 16 7 C 0.09 2.01 7.28 22.40 0.16 2.17 16 8 F -0.14 -3.19 16.84 44.97 0.76 -2.44 16 9 C -0.09 -1.63 6.33 22.37 0.14 -1.49 16 10 Cl -0.05 -0.91 28.62 -2.72 -0.08 -0.99 16 11 C -0.06 -0.89 9.48 22.29 0.21 -0.68 16 12 C 0.70 22.49 8.28 179.06 1.48 23.97 16 13 O -0.63 -24.61 15.44 -4.01 -0.06 -24.67 16 14 N -0.74 -25.26 5.42 -478.54 -2.59 -27.85 16 15 C 0.16 6.91 5.61 86.38 0.48 7.40 16 16 C 0.02 1.22 5.09 29.85 0.15 1.38 16 17 C -0.55 -30.30 9.11 25.60 0.23 -30.06 16 18 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 19 C 0.01 0.41 5.46 84.66 0.46 0.88 16 20 N -0.93 -53.94 13.29 21.45 0.28 -53.66 16 21 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 1.04 6.36 -2.39 -0.02 1.03 16 27 H 0.11 0.75 7.89 -2.39 -0.02 0.73 16 28 H 0.08 1.69 7.36 -2.39 -0.02 1.67 16 29 H 0.13 1.04 7.84 -2.38 -0.02 1.02 16 30 H 0.14 3.27 7.57 -2.91 -0.02 3.25 16 31 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.40 11.99 6.20 -92.71 -0.58 11.42 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -68.90 347.06 3.81 -65.08 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.52 Total: 11.90 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 5.45 Total: 3.12 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -4.79 Total: -97.40 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.06 Total: -24.67 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.76 Total: -2.44 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -68.90 3.81 -65.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433050650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.820 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds