Wall clock time and date at job start Tue Mar 31 2020 10:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47031 * 2 1 4 4 C 1.53000 * 109.46974 * 240.00187 * 2 1 3 5 5 F 1.39900 * 109.47321 * 60.00487 * 4 2 1 6 6 N 1.46495 * 109.47421 * 120.00406 * 2 1 3 7 7 C 1.34785 * 119.99659 * 299.99977 * 6 2 1 8 8 O 1.21585 * 120.00076 * 0.02562 * 7 6 2 9 9 N 1.34778 * 119.99930 * 180.27306 * 7 6 2 10 10 C 1.39270 * 119.99699 * 175.47431 * 9 7 6 11 11 C 1.39461 * 119.84028 * 34.73971 * 10 9 7 12 12 C 1.36382 * 120.17775 * 179.72026 * 11 10 9 13 13 C 1.40888 * 119.84842 * 0.54669 * 12 11 10 14 14 C 1.41158 * 120.15859 * 179.74636 * 13 12 11 15 15 H 1.07993 * 119.99639 * 34.75245 * 14 13 12 16 16 C 1.39887 * 119.99969 * 214.75195 * 14 13 12 17 17 N 1.30884 * 120.00114 * 355.59480 * 16 14 13 18 18 Si 1.86792 * 119.99892 * 175.59070 * 16 14 13 19 19 H 1.48500 * 109.47493 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47026 * 120.00294 * 18 16 14 21 21 H 1.48502 * 109.47161 * 240.00139 * 18 16 14 22 22 C 1.40844 * 119.68259 * 359.72662 * 13 12 11 23 23 C 1.36477 * 119.82012 * 359.97438 * 22 13 12 24 24 Cl 1.73602 * 119.92626 * 179.97438 * 23 22 13 25 25 H 1.08989 * 109.46901 * 299.99855 * 1 2 3 26 26 H 1.08999 * 109.46674 * 60.00047 * 1 2 3 27 27 H 1.08993 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46953 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47362 * 300.00053 * 3 2 1 30 30 H 1.09003 * 109.47081 * 60.00234 * 3 2 1 31 31 H 1.09003 * 109.47035 * 179.97438 * 4 2 1 32 32 H 1.08993 * 109.47211 * 299.99824 * 4 2 1 33 33 H 0.96991 * 120.00651 * 119.99903 * 6 2 1 34 34 H 0.97000 * 119.99644 * 355.47969 * 9 7 6 35 35 H 1.08000 * 119.91496 * 359.97059 * 11 10 9 36 36 H 1.07998 * 120.07461 * 180.25187 * 12 11 10 37 37 H 0.97000 * 120.00203 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.08746 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 9 1.5738 -0.0616 -2.3915 6 7 2.0184 -0.6907 1.1961 7 6 1.6928 -0.2302 2.4203 8 8 0.9934 0.7581 2.5319 9 7 2.1466 -0.8624 3.5207 10 6 1.8894 -0.3337 4.7832 11 6 0.6836 0.3228 5.0282 12 6 0.4222 0.8381 6.2635 13 6 1.3785 0.7161 7.2909 14 6 1.1170 1.2517 8.5705 15 1 0.1120 1.2401 8.9655 16 6 2.1596 1.7973 9.3268 17 7 3.3904 1.7339 8.8862 18 14 1.7953 2.6164 10.9656 19 1 0.3362 2.5568 11.2352 20 1 2.5272 1.9084 12.0464 21 1 2.2328 4.0347 10.9182 22 6 2.5966 0.0569 7.0352 23 6 2.8419 -0.4592 5.7958 24 17 4.3427 -1.2717 5.4774 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 -1.2495 32 1 1.6767 -1.7488 -1.2493 33 1 2.5761 -1.4792 1.1071 34 1 2.6525 -1.6854 3.4332 35 1 -0.0468 0.4200 4.2386 36 1 -0.5138 1.3426 6.4525 37 1 4.1134 2.1126 9.4105 38 1 3.3342 -0.0407 7.8181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455740158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:46 Heat of formation + Delta-G solvation = -86.606150 kcal Electronic energy + Delta-G solvation = -23717.889582 eV Core-core repulsion = 19920.518228 eV Total energy + Delta-G solvation = -3797.371353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.66281 -41.63212 -39.65306 -37.55026 -37.20248 -35.93929 -34.84486 -32.63985 -31.25909 -30.46202 -28.28765 -27.91330 -26.82909 -23.80732 -22.95238 -21.92922 -20.82902 -19.61748 -19.18167 -18.38563 -17.39119 -17.03781 -16.88300 -16.45505 -16.27362 -15.94380 -15.65640 -15.28632 -14.92793 -14.70037 -14.45490 -14.27302 -14.07127 -13.86096 -13.41405 -13.21311 -13.12576 -12.93066 -12.78396 -12.65098 -12.37405 -12.21040 -11.93620 -11.86869 -11.84626 -11.63628 -11.53580 -11.19787 -10.83821 -10.62023 -10.15832 -9.36213 -8.75681 -8.52338 -6.36368 0.67518 0.99593 1.40683 1.42182 1.46679 1.56789 1.65275 2.20182 2.25200 2.76060 3.23337 3.40105 3.56682 3.74452 3.96158 4.12011 4.37427 4.43893 4.56512 4.66153 4.73667 4.75339 4.88448 4.92710 4.95325 5.02996 5.23831 5.29683 5.34276 5.35040 5.49987 5.55966 5.69742 5.90241 6.02905 6.16369 6.27029 6.55557 6.89731 6.92838 7.11154 7.65051 8.39712 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.003237 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.898554 B = 8647.151129 C = 9311.915452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.162 3.838 3 C -0.165 4.165 4 C 0.068 3.932 5 F -0.216 7.216 6 N -0.721 5.721 7 C 0.702 3.298 8 O -0.604 6.604 9 N -0.660 5.660 10 C 0.050 3.950 11 C -0.082 4.082 12 C -0.210 4.210 13 C 0.077 3.923 14 C -0.489 4.489 15 H 0.080 0.920 16 C 0.028 3.972 17 N -0.837 5.837 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.265 1.265 21 H -0.271 1.271 22 C -0.152 4.152 23 C -0.031 4.031 24 Cl -0.088 7.088 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.413 0.587 34 H 0.410 0.590 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.286 0.714 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -7.390 -14.934 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.075 3.925 3 C -0.223 4.223 4 C 0.013 3.987 5 F -0.197 7.197 6 N -0.379 5.379 7 C 0.402 3.598 8 O -0.483 6.483 9 N -0.308 5.308 10 C -0.046 4.046 11 C -0.102 4.102 12 C -0.230 4.230 13 C 0.074 3.926 14 C -0.520 4.520 15 H 0.098 0.902 16 C -0.184 4.184 17 N -0.464 5.464 18 Si 0.810 3.190 19 H -0.181 1.181 20 H -0.190 1.190 21 H -0.196 1.196 22 C -0.173 4.173 23 C -0.060 4.060 24 Cl -0.059 7.059 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.250 0.750 34 H 0.247 0.753 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.870 -6.505 -14.901 16.283 hybrid contribution 0.564 -0.110 0.763 0.956 sum 1.435 -6.615 -14.138 15.675 Atomic orbital electron populations 1.22192 0.94163 1.02778 1.02989 1.20707 0.94973 0.92849 0.83998 1.22205 1.01247 0.95942 1.02887 1.22173 1.01256 0.96212 0.79042 1.92756 1.91037 1.83778 1.52156 1.44785 1.56805 1.33712 1.02623 1.15994 0.80506 0.82423 0.80828 1.90848 1.43007 1.28682 1.85763 1.41899 1.58654 1.27677 1.02568 1.16696 0.94411 1.09200 0.84268 1.20522 0.94985 0.98357 0.96371 1.21047 1.01582 1.07268 0.93085 1.17893 0.91334 0.89650 0.93708 1.19753 0.96082 1.35505 1.00627 0.90201 1.26746 0.93995 0.95197 1.02488 1.69821 1.01000 1.36959 1.38633 0.85046 0.79668 0.77970 0.76343 1.18131 1.18973 1.19563 1.21082 1.00543 1.00495 0.95192 1.20429 0.86623 1.03084 0.95886 1.98244 1.33312 1.78512 1.95850 0.92700 0.90822 0.91465 0.91997 0.90723 0.92941 0.87881 0.87473 0.75018 0.75319 0.85864 0.87489 0.90355 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 8.28 71.98 0.60 -3.06 16 2 C 0.16 3.21 0.91 3.61 0.00 3.21 16 3 C -0.16 -3.95 8.28 71.98 0.60 -3.35 16 4 C 0.07 0.85 6.48 71.98 0.47 1.32 16 5 F -0.22 -3.78 16.32 44.97 0.73 -3.04 16 6 N -0.72 -15.04 5.11 -438.00 -2.24 -17.28 16 7 C 0.70 22.29 7.82 179.05 1.40 23.69 16 8 O -0.60 -24.15 9.93 -3.98 -0.04 -24.19 16 9 N -0.66 -21.56 5.02 -316.69 -1.59 -23.15 16 10 C 0.05 2.11 6.32 38.58 0.24 2.36 16 11 C -0.08 -3.76 8.61 22.13 0.19 -3.56 16 12 C -0.21 -10.34 9.74 22.49 0.22 -10.12 16 13 C 0.08 4.09 5.55 -21.28 -0.12 3.97 16 14 C -0.49 -25.84 9.02 23.39 0.21 -25.62 16 15 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 16 C 0.03 1.41 5.42 85.23 0.46 1.88 16 17 N -0.84 -43.33 10.59 21.82 0.23 -43.10 16 18 Si 0.99 38.19 29.56 68.60 2.03 40.22 16 19 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 22 C -0.15 -7.79 8.38 22.50 0.19 -7.61 16 23 C -0.03 -1.40 6.30 22.18 0.14 -1.26 16 24 Cl -0.09 -3.18 27.92 -2.72 -0.08 -3.25 16 25 H 0.05 1.64 6.16 -2.39 -0.01 1.63 16 26 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.62 7.80 -2.39 -0.02 1.60 16 30 H 0.05 1.68 6.16 -2.39 -0.01 1.66 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.41 5.38 8.49 -92.71 -0.79 4.60 16 34 H 0.41 10.68 8.07 -92.71 -0.75 9.93 16 35 H 0.12 5.55 6.18 -2.91 -0.02 5.53 16 36 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 37 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 38 H 0.13 6.86 6.13 -2.91 -0.02 6.84 16 Total: -1.00 -63.50 330.45 3.24 -60.27 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.41 Total: 31.70 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 4.60 Total: -18.17 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -3.60 Total: -83.53 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.04 Total: -24.19 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.73 Total: -3.04 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 17 Polarization: -3.18 SS G_CDS: -0.08 Total: -3.25 kcal Total: -63.50 3.24 -60.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455740158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.339 kcal (2) G-P(sol) polarization free energy of solvation -63.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds