Wall clock time and date at job start Tue Mar 31 2020 10:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46901 * 2 1 4 4 C 1.50702 * 109.47156 * 239.99890 * 2 1 3 5 5 H 1.07999 * 120.00033 * 240.00110 * 4 2 1 6 6 C 1.37872 * 119.99784 * 60.00102 * 4 2 1 7 7 N 1.31516 * 120.00087 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46921 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46900 * 119.99978 * 8 6 4 11 11 H 1.48498 * 109.47431 * 240.00215 * 8 6 4 12 12 C 1.53001 * 109.47095 * 120.00212 * 2 1 3 13 13 N 1.46502 * 109.46975 * 300.00054 * 12 2 1 14 14 C 1.34774 * 119.99967 * 180.02562 * 13 12 2 15 15 O 1.21603 * 120.00207 * 359.97438 * 14 13 12 16 16 C 1.47444 * 119.99823 * 179.97438 * 14 13 12 17 17 C 1.39798 * 120.19080 * 5.94767 * 16 14 13 18 18 C 1.37813 * 119.94901 * 180.02562 * 17 16 14 19 19 Cl 1.73601 * 119.82723 * 179.97438 * 18 17 16 20 20 C 1.38721 * 120.34553 * 0.02562 * 18 17 16 21 21 C 1.38100 * 120.38522 * 359.74311 * 20 18 17 22 22 F 1.35098 * 119.98110 * 180.25805 * 21 20 18 23 23 C 1.39150 * 120.03913 * 0.51078 * 21 20 18 24 24 N 1.39079 * 120.17138 * 179.77270 * 23 21 20 25 25 H 1.09001 * 109.47444 * 299.99445 * 1 2 3 26 26 H 1.09000 * 109.47193 * 60.00227 * 1 2 3 27 27 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47041 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47662 * 299.99925 * 3 2 1 30 30 H 1.09001 * 109.47095 * 60.00284 * 3 2 1 31 31 H 0.97000 * 119.99829 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47315 * 179.97438 * 12 2 1 33 33 H 1.08997 * 109.47004 * 59.99706 * 12 2 1 34 34 H 0.97004 * 119.99837 * 359.97438 * 13 12 2 35 35 H 1.08002 * 120.02669 * 0.02562 * 17 16 14 36 36 H 1.07996 * 119.81253 * 179.97438 * 20 18 17 37 37 H 0.96997 * 119.99655 * 204.56144 * 24 23 21 38 38 H 0.97001 * 120.00003 * 24.54900 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6038 10 1 1.1677 -1.5865 -4.8165 11 1 3.1473 -0.1858 -4.8161 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5767 -1.4796 3.7811 16 6 1.3865 0.2045 4.8733 17 6 0.4834 1.2648 4.7535 18 6 0.0281 1.9116 5.8820 19 17 -1.0929 3.2284 5.7295 20 6 0.4616 1.5167 7.1392 21 6 1.3498 0.4679 7.2741 22 9 1.7626 0.0867 8.5027 23 6 1.8240 -0.1930 6.1451 24 7 2.7223 -1.2465 6.2776 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 0.7090 1.1614 -3.4843 32 1 3.1299 -0.7217 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 0.9942 0.7582 2.3564 35 1 0.1428 1.5769 3.7772 36 1 0.0995 2.0298 8.0177 37 1 3.3163 -1.4724 5.5448 38 1 2.7549 -1.7552 7.1029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:15 Heat of formation + Delta-G solvation = -67.562327 kcal Electronic energy + Delta-G solvation = -23743.972419 eV Core-core repulsion = 19947.426868 eV Total energy + Delta-G solvation = -3796.545551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.09179 -40.35006 -38.39859 -36.82077 -36.31616 -34.65926 -33.35435 -31.56369 -30.45062 -28.75361 -25.88365 -25.77452 -25.19765 -23.82576 -22.41011 -20.62722 -18.96663 -18.42182 -17.49399 -17.21870 -16.44451 -16.05331 -15.82831 -15.44602 -15.27536 -14.99132 -14.82386 -14.62136 -13.73155 -13.49054 -13.40714 -12.98866 -12.82990 -12.51677 -12.30126 -12.22309 -11.89446 -11.43842 -11.25291 -11.20365 -10.92067 -10.69864 -10.44327 -10.41597 -10.23917 -9.73541 -9.69273 -9.35051 -9.25764 -8.83279 -8.57022 -8.39554 -7.79596 -6.05866 -4.16159 0.50682 0.92848 1.91853 2.71667 3.24900 3.33645 3.36407 3.43298 3.59302 3.66764 4.03935 4.36246 4.45097 4.61932 4.87144 5.10862 5.21201 5.38477 5.54068 5.63661 5.80511 6.15116 6.24597 6.26697 6.44621 6.66317 6.77064 6.84826 6.89643 6.96348 7.21116 7.30223 7.50915 7.64347 7.66810 7.89855 7.96455 8.09159 8.32970 8.50421 8.84475 9.50071 10.95570 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.019516 B = 0.003369 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.351129 B = 8308.761030 C = 9546.552838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.705 5.705 14 C 0.561 3.439 15 O -0.553 6.553 16 C -0.176 4.176 17 C -0.036 4.036 18 C -0.076 4.076 19 Cl -0.061 7.061 20 C -0.077 4.077 21 C 0.022 3.978 22 F -0.134 7.134 23 C 0.251 3.749 24 N -0.847 5.847 25 H 0.006 0.994 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.087 0.913 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.399 0.601 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.421 0.579 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 3.054 18.043 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.009 3.991 13 N -0.355 5.355 14 C 0.348 3.652 15 O -0.433 6.433 16 C -0.185 4.185 17 C -0.056 4.056 18 C -0.104 4.104 19 Cl -0.032 7.032 20 C -0.098 4.098 21 C -0.002 4.002 22 F -0.113 7.113 23 C 0.138 3.862 24 N -0.392 5.392 25 H 0.024 0.976 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.260 0.740 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.592 2.547 17.895 18.146 hybrid contribution 0.150 -0.224 -0.591 0.650 sum -1.441 2.323 17.304 17.519 Atomic orbital electron populations 1.21841 0.97664 0.99272 1.00142 1.18381 0.92876 0.92816 0.90516 1.21841 0.98647 0.98274 1.00160 1.20996 1.31541 1.12130 0.89809 0.92360 1.24875 0.94826 0.94903 0.98868 1.69808 1.36624 1.22697 1.23185 0.86519 0.78656 0.79741 0.82987 1.19772 1.21050 1.21047 1.21808 0.98328 0.95908 0.83067 1.46231 1.51960 1.31499 1.05765 1.17776 0.80632 0.83766 0.83059 1.90545 1.39777 1.26774 1.86248 1.19440 1.04261 1.02191 0.92632 1.21125 0.93576 0.92346 0.98551 1.20075 1.00529 0.96249 0.93595 1.98378 1.60339 1.46360 1.98157 1.20855 0.95770 0.95449 0.97698 1.16869 1.04511 0.99476 0.79365 1.91476 1.89443 1.90641 1.39753 1.17673 0.89143 0.88276 0.91117 1.42861 1.40607 1.33621 1.22124 0.97550 0.89490 0.95349 0.95367 0.89484 0.97532 0.93012 0.92361 0.92354 0.76448 0.83830 0.83502 0.73951 0.77271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 2 C 0.05 1.22 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 4 C -0.51 -12.86 8.01 -34.44 -0.28 -13.14 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.03 9.35 55.43 0.52 -22.51 16 8 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.13 2.63 4.50 -4.04 -0.02 2.61 16 13 N -0.70 -11.85 4.91 -61.38 -0.30 -12.15 16 14 C 0.56 9.17 7.74 -12.51 -0.10 9.07 16 15 O -0.55 -10.17 13.82 5.27 0.07 -10.10 16 16 C -0.18 -2.38 5.89 -104.81 -0.62 -2.99 16 17 C -0.04 -0.42 9.29 -39.15 -0.36 -0.79 16 18 C -0.08 -0.81 6.31 -39.56 -0.25 -1.06 16 19 Cl -0.06 -0.62 28.94 -51.86 -1.50 -2.12 16 20 C -0.08 -0.77 9.78 -39.45 -0.39 -1.16 16 21 C 0.02 0.25 7.30 -39.29 -0.29 -0.04 16 22 F -0.13 -1.47 16.80 2.25 0.04 -1.44 16 23 C 0.25 3.14 6.77 -83.48 -0.57 2.57 16 24 N -0.85 -9.92 8.42 32.60 0.27 -9.65 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 26 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.40 6.10 4.23 -40.82 -0.17 5.93 16 35 H 0.14 1.57 6.45 -52.49 -0.34 1.23 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.42 5.52 6.13 -40.82 -0.25 5.27 16 38 H 0.40 3.75 8.57 -40.82 -0.35 3.40 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -26.55 328.41 -7.51 -34.06 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.11 Total: 10.93 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.43 Total: -7.27 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.49 Total: -44.31 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.55 -7.51 -34.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.502 kcal (2) G-P(sol) polarization free energy of solvation -26.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds