Wall clock time and date at job start Tue Mar 31 2020 10:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46901 * 2 1 4 4 C 1.50702 * 109.47156 * 239.99890 * 2 1 3 5 5 H 1.07999 * 120.00033 * 240.00110 * 4 2 1 6 6 C 1.37872 * 119.99784 * 60.00102 * 4 2 1 7 7 N 1.31516 * 120.00087 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46921 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46900 * 119.99978 * 8 6 4 11 11 H 1.48498 * 109.47431 * 240.00215 * 8 6 4 12 12 C 1.53001 * 109.47095 * 120.00212 * 2 1 3 13 13 N 1.46502 * 109.46975 * 300.00054 * 12 2 1 14 14 C 1.34774 * 119.99967 * 180.02562 * 13 12 2 15 15 O 1.21603 * 120.00207 * 359.97438 * 14 13 12 16 16 C 1.47444 * 119.99823 * 179.97438 * 14 13 12 17 17 C 1.39798 * 120.19080 * 5.94767 * 16 14 13 18 18 C 1.37813 * 119.94901 * 180.02562 * 17 16 14 19 19 Cl 1.73601 * 119.82723 * 179.97438 * 18 17 16 20 20 C 1.38721 * 120.34553 * 0.02562 * 18 17 16 21 21 C 1.38100 * 120.38522 * 359.74311 * 20 18 17 22 22 F 1.35098 * 119.98110 * 180.25805 * 21 20 18 23 23 C 1.39150 * 120.03913 * 0.51078 * 21 20 18 24 24 N 1.39079 * 120.17138 * 179.77270 * 23 21 20 25 25 H 1.09001 * 109.47444 * 299.99445 * 1 2 3 26 26 H 1.09000 * 109.47193 * 60.00227 * 1 2 3 27 27 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47041 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47662 * 299.99925 * 3 2 1 30 30 H 1.09001 * 109.47095 * 60.00284 * 3 2 1 31 31 H 0.97000 * 119.99829 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47315 * 179.97438 * 12 2 1 33 33 H 1.08997 * 109.47004 * 59.99706 * 12 2 1 34 34 H 0.97004 * 119.99837 * 359.97438 * 13 12 2 35 35 H 1.08002 * 120.02669 * 0.02562 * 17 16 14 36 36 H 1.07996 * 119.81253 * 179.97438 * 20 18 17 37 37 H 0.96997 * 119.99655 * 204.56144 * 24 23 21 38 38 H 0.97001 * 120.00003 * 24.54900 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6038 10 1 1.1677 -1.5865 -4.8165 11 1 3.1473 -0.1858 -4.8161 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5767 -1.4796 3.7811 16 6 1.3865 0.2045 4.8733 17 6 0.4834 1.2648 4.7535 18 6 0.0281 1.9116 5.8820 19 17 -1.0929 3.2284 5.7295 20 6 0.4616 1.5167 7.1392 21 6 1.3498 0.4679 7.2741 22 9 1.7626 0.0867 8.5027 23 6 1.8240 -0.1930 6.1451 24 7 2.7223 -1.2465 6.2776 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 0.7090 1.1614 -3.4843 32 1 3.1299 -0.7217 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 0.9942 0.7582 2.3564 35 1 0.1428 1.5769 3.7772 36 1 0.0995 2.0298 8.0177 37 1 3.3163 -1.4724 5.5448 38 1 2.7549 -1.7552 7.1029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458048166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:15 Heat of formation + Delta-G solvation = -82.358515 kcal Electronic energy + Delta-G solvation = -23744.614030 eV Core-core repulsion = 19947.426868 eV Total energy + Delta-G solvation = -3797.187162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.95141 -41.49102 -39.55272 -38.15820 -37.43355 -35.72691 -34.80624 -33.05044 -31.75850 -29.67615 -27.54405 -27.51207 -26.92728 -24.97437 -23.34525 -21.89430 -20.62216 -19.55756 -18.50999 -18.14569 -17.85365 -17.35273 -17.02087 -16.60376 -16.48251 -16.25254 -16.16293 -15.92131 -14.92136 -14.82875 -14.65401 -14.53265 -14.08594 -13.99959 -13.40598 -13.22679 -13.17312 -13.07097 -12.82018 -12.66914 -12.55833 -12.23918 -12.12491 -12.01588 -11.47004 -11.34582 -11.22300 -10.89101 -10.67052 -10.39088 -10.22960 -9.91397 -8.71675 -8.00730 -6.16152 -0.43022 0.03737 1.07923 1.42489 1.47271 1.55818 1.63892 2.17136 2.48808 2.52640 2.73688 3.10370 3.23333 3.48756 3.71145 3.96282 4.15325 4.39942 4.51495 4.53422 4.63507 4.72442 4.74995 4.92800 5.01206 5.07346 5.12719 5.21577 5.33118 5.40899 5.56016 5.69231 5.69688 6.17096 6.22961 6.29144 6.44897 6.55653 6.74839 6.88400 7.21302 7.51742 8.98233 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.019516 B = 0.003369 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.351129 B = 8308.761030 C = 9546.552838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.148 3.852 13 N -0.702 5.702 14 C 0.561 3.439 15 O -0.578 6.578 16 C -0.193 4.193 17 C -0.032 4.032 18 C -0.076 4.076 19 Cl -0.052 7.052 20 C -0.061 4.061 21 C 0.021 3.979 22 F -0.132 7.132 23 C 0.244 3.756 24 N -0.846 5.846 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.259 0.741 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.407 0.593 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.415 0.585 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.614 3.924 19.636 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 C -0.179 4.179 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.025 3.975 13 N -0.352 5.352 14 C 0.350 3.650 15 O -0.460 6.460 16 C -0.202 4.202 17 C -0.052 4.052 18 C -0.105 4.105 19 Cl -0.023 7.023 20 C -0.081 4.081 21 C -0.003 4.003 22 F -0.111 7.111 23 C 0.131 3.869 24 N -0.391 5.391 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.246 0.754 35 H 0.169 0.831 36 H 0.191 0.809 37 H 0.253 0.747 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.257 3.427 19.518 19.945 hybrid contribution 0.340 -0.473 -0.998 1.156 sum -1.917 2.955 18.520 18.852 Atomic orbital electron populations 1.21683 0.97112 0.98753 1.00410 1.18379 0.93272 0.93068 0.90384 1.21681 0.98027 0.97837 1.00402 1.21288 1.31596 1.12122 0.91463 0.93591 1.25428 0.95176 0.95574 1.00910 1.69913 1.37038 1.23268 1.23484 0.85736 0.78087 0.78750 0.80387 1.19955 1.20886 1.20861 1.21339 0.97371 0.95171 0.83647 1.46006 1.52413 1.31722 1.05105 1.18165 0.79913 0.83437 0.83497 1.90537 1.40838 1.27948 1.86674 1.19131 1.06028 1.03470 0.91555 1.21183 0.92881 0.91719 0.99409 1.20089 1.00569 0.96359 0.93510 1.98389 1.59934 1.45801 1.98149 1.21118 0.94204 0.94378 0.98381 1.16850 1.04759 0.99703 0.79022 1.91487 1.89478 1.90677 1.39460 1.17822 0.89218 0.88499 0.91359 1.42852 1.40227 1.33654 1.22339 0.94461 0.91914 0.96205 0.96170 0.91913 0.94488 0.93092 0.93672 0.93812 0.75448 0.83092 0.80915 0.74720 0.76130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 2 C 0.05 2.21 0.50 -52.93 -0.03 2.18 16 3 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 4 C -0.53 -27.06 8.01 25.60 0.21 -26.86 16 5 H 0.05 2.41 7.74 -2.91 -0.02 2.39 16 6 C 0.03 1.49 5.15 84.65 0.44 1.93 16 7 N -0.90 -46.99 9.35 21.45 0.20 -46.79 16 8 Si 0.94 41.90 29.54 68.60 2.03 43.93 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 C 0.15 5.97 4.50 86.38 0.39 6.36 16 13 N -0.70 -22.96 4.91 -466.36 -2.29 -25.25 16 14 C 0.56 17.96 7.74 86.67 0.67 18.63 16 15 O -0.58 -21.26 13.82 -4.04 -0.06 -21.32 16 16 C -0.19 -4.92 5.89 -19.99 -0.12 -5.04 16 17 C -0.03 -0.68 9.29 22.55 0.21 -0.47 16 18 C -0.08 -1.42 6.31 22.28 0.14 -1.28 16 19 Cl -0.05 -0.89 28.94 -2.72 -0.08 -0.97 16 20 C -0.06 -1.02 9.78 22.35 0.22 -0.80 16 21 C 0.02 0.42 7.30 22.46 0.16 0.58 16 22 F -0.13 -2.58 16.80 44.97 0.76 -1.83 16 23 C 0.24 5.74 6.77 38.70 0.26 6.01 16 24 N -0.85 -19.09 8.42 -50.76 -0.43 -19.51 16 25 H 0.04 1.32 6.86 -2.39 -0.02 1.30 16 26 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 30 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 31 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.41 11.72 4.23 -92.71 -0.39 11.33 16 35 H 0.15 2.91 6.45 -2.91 -0.02 2.89 16 36 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.42 10.77 6.13 -92.71 -0.57 10.20 16 38 H 0.41 7.26 8.57 -92.71 -0.79 6.47 16 Total: -1.00 -56.31 328.41 3.24 -53.07 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.61 Total: 26.73 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 3.71 Total: -8.05 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -2.52 Total: -91.56 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.06 Total: -21.32 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.76 Total: -1.83 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -56.31 3.24 -53.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.290 kcal (2) G-P(sol) polarization free energy of solvation -56.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds