Wall clock time and date at job start Tue Mar 31 2020 10:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47432 * 2 1 4 4 C 1.50700 * 109.46923 * 240.00002 * 2 1 3 5 5 H 1.08004 * 120.00440 * 240.00031 * 4 2 1 6 6 C 1.37878 * 120.00213 * 60.00167 * 4 2 1 7 7 N 1.31516 * 119.99839 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47031 * 60.00063 * 8 6 4 10 10 H 1.48495 * 109.47430 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47170 * 300.00427 * 8 6 4 12 12 C 1.53001 * 109.47523 * 120.00147 * 2 1 3 13 13 N 1.46496 * 109.46740 * 300.00026 * 12 2 1 14 14 C 1.34784 * 119.99954 * 179.97438 * 13 12 2 15 15 O 1.21595 * 119.99912 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99776 * 180.27353 * 14 13 12 17 17 C 1.40121 * 119.99725 * 175.24043 * 16 14 13 18 18 C 1.38822 * 120.04553 * 34.68792 * 17 16 14 19 19 C 1.38130 * 119.96748 * 179.74409 * 18 17 16 20 20 C 1.38484 * 120.06383 * 0.55189 * 19 18 17 21 21 F 1.35105 * 119.95240 * 179.72224 * 20 19 18 22 22 C 1.38447 * 120.09620 * 359.70561 * 20 19 18 23 23 C 1.38230 * 120.03327 * 0.02562 * 22 20 19 24 24 Cl 1.73607 * 120.03486 * 179.97438 * 23 22 20 25 25 H 1.09004 * 109.46892 * 299.99951 * 1 2 3 26 26 H 1.09004 * 109.47055 * 59.99634 * 1 2 3 27 27 H 1.09003 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47039 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46648 * 300.00126 * 3 2 1 30 30 H 1.08996 * 109.47171 * 59.99905 * 3 2 1 31 31 H 0.97001 * 119.99934 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47212 * 179.97438 * 12 2 1 33 33 H 1.09003 * 109.47009 * 59.99660 * 12 2 1 34 34 H 0.97002 * 120.00346 * 359.97438 * 13 12 2 35 35 H 0.96992 * 120.00392 * 355.24726 * 16 14 13 36 36 H 1.08002 * 120.01794 * 0.02562 * 18 17 16 37 37 H 1.07996 * 119.97095 * 180.25534 * 19 18 17 38 38 H 1.08009 * 119.98337 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0083 10 1 1.8267 -0.4199 -5.2205 11 1 3.8073 -1.1191 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4914 3.6695 15 8 2.5753 -1.4806 3.7810 16 7 1.4231 0.1407 4.7699 17 6 1.6773 -0.3940 6.0399 18 6 2.8727 -1.0540 6.2896 19 6 3.1239 -1.5759 7.5436 20 6 2.1794 -1.4512 8.5488 21 9 2.4251 -1.9674 9.7729 22 6 0.9841 -0.7981 8.3012 23 6 0.7310 -0.2695 7.0493 24 17 -0.7682 0.5489 6.7385 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7089 1.1614 -3.4844 32 1 3.1300 -0.7216 1.2489 33 1 1.6767 -1.7490 1.2492 34 1 0.9943 0.7582 2.3564 35 1 0.9205 0.9657 4.6827 36 1 3.6080 -1.1556 5.5051 37 1 4.0556 -2.0858 7.7391 38 1 0.2490 -0.7016 9.0866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459229696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:20 Heat of formation + Delta-G solvation = -58.543031 kcal Electronic energy + Delta-G solvation = -23348.307481 eV Core-core repulsion = 19552.153036 eV Total energy + Delta-G solvation = -3796.154445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.10713 -40.66359 -38.82433 -36.79398 -36.53425 -34.63041 -33.43568 -31.23630 -30.98555 -29.07960 -25.78321 -25.68302 -24.95410 -23.60958 -22.70167 -20.84150 -18.93641 -18.68485 -18.04967 -17.54170 -16.58337 -15.91291 -15.81334 -15.32663 -15.07112 -14.77720 -14.74025 -14.15039 -13.87168 -13.77331 -13.47036 -13.17990 -12.94642 -12.89250 -12.25779 -11.79816 -11.60221 -11.45485 -11.35034 -11.24640 -10.90532 -10.76604 -10.49535 -10.37955 -10.25099 -9.95224 -9.69647 -9.40209 -9.21843 -8.85987 -8.65273 -8.41614 -8.13487 -6.06453 -4.16882 0.70225 0.85670 1.72011 2.65521 3.05881 3.27643 3.32228 3.35832 3.46293 4.03571 4.29472 4.41053 4.42381 4.66928 4.92290 5.07551 5.20538 5.36682 5.65518 5.82100 5.97969 6.08894 6.20960 6.26012 6.42524 6.63227 6.67251 6.76156 6.77290 6.91463 6.96104 7.04477 7.30218 7.50047 7.65101 7.95613 8.04015 8.16077 8.33462 8.68522 8.83765 9.49266 10.94980 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.002795 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.234381 B =10014.651293 C =10743.610870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.722 5.722 14 C 0.699 3.301 15 O -0.580 6.580 16 N -0.689 5.689 17 C 0.182 3.818 18 C -0.082 4.082 19 C -0.127 4.127 20 C 0.085 3.915 21 F -0.137 7.137 22 C -0.127 4.127 23 C -0.047 4.047 24 Cl -0.054 7.054 25 H 0.005 0.995 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.005 0.995 31 H 0.261 0.739 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.397 0.603 35 H 0.409 0.591 36 H 0.164 0.836 37 H 0.144 0.856 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 1.409 19.467 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.026 3.974 13 N -0.375 5.375 14 C 0.399 3.601 15 O -0.458 6.458 16 N -0.337 5.337 17 C 0.084 3.916 18 C -0.103 4.103 19 C -0.146 4.146 20 C 0.065 3.935 21 F -0.115 7.115 22 C -0.147 4.147 23 C -0.077 4.077 24 Cl -0.025 7.025 25 H 0.024 0.976 26 H 0.105 0.895 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.232 0.768 35 H 0.245 0.755 36 H 0.181 0.819 37 H 0.162 0.838 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.461 0.684 19.257 19.275 hybrid contribution -0.407 0.314 -0.715 0.881 sum -0.868 0.998 18.541 18.588 Atomic orbital electron populations 1.21838 0.97717 0.99257 1.00077 1.18362 0.92836 0.92778 0.90396 1.21838 0.98646 0.98317 1.00086 1.20931 1.31703 1.12204 0.89816 0.92394 1.24874 0.94800 0.94897 0.98868 1.69790 1.36546 1.22680 1.23413 0.86619 0.79251 0.79801 0.82112 1.20249 1.21325 1.20242 1.21713 0.98127 0.95597 0.82008 1.45570 1.54790 1.32907 1.04283 1.16015 0.80686 0.82872 0.80531 1.90888 1.42096 1.27291 1.85488 1.42756 1.59629 1.28172 1.03116 1.17276 0.92517 0.97866 0.83958 1.21303 0.95624 0.96637 0.96737 1.21202 0.99936 1.01440 0.92039 1.17397 0.95185 0.99752 0.81173 1.91510 1.94454 1.84861 1.40707 1.20709 0.97465 1.00088 0.96464 1.20409 0.88576 1.03709 0.95005 1.98384 1.30997 1.77285 1.95797 0.97573 0.89549 0.95362 0.95351 0.89543 0.97580 0.92898 0.92515 0.92536 0.76784 0.75481 0.81876 0.83786 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.08 37.15 0.30 -2.56 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -12.92 8.01 -34.44 -0.28 -13.20 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.09 9.35 55.43 0.52 -22.57 16 8 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.15 2.98 4.50 -4.04 -0.02 2.96 16 13 N -0.72 -11.99 4.96 -65.23 -0.32 -12.31 16 14 C 0.70 11.36 8.41 -86.92 -0.73 10.63 16 15 O -0.58 -11.14 13.76 5.28 0.07 -11.06 16 16 N -0.69 -8.75 5.06 -14.18 -0.07 -8.82 16 17 C 0.18 2.24 6.31 -83.60 -0.53 1.72 16 18 C -0.08 -1.01 8.70 -39.40 -0.34 -1.35 16 19 C -0.13 -1.31 10.02 -39.53 -0.40 -1.71 16 20 C 0.09 0.89 7.30 -39.41 -0.29 0.60 16 21 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 22 C -0.13 -1.25 9.80 -39.51 -0.39 -1.64 16 23 C -0.05 -0.51 6.34 -39.33 -0.25 -0.76 16 24 Cl -0.05 -0.53 27.96 -51.86 -1.45 -1.98 16 25 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 26 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 30 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 31 H 0.26 6.60 8.31 -40.82 -0.34 6.27 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.40 5.90 6.18 -40.82 -0.25 5.65 16 35 H 0.41 4.26 8.10 -40.82 -0.33 3.93 16 36 H 0.16 2.23 6.20 -52.49 -0.33 1.91 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -27.14 331.48 -8.35 -35.50 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.33 Total: 7.37 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.79 Total: -5.02 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.12 Total: -43.70 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.45 Total: -1.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.14 -8.35 -35.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459229696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.046 kcal (2) G-P(sol) polarization free energy of solvation -27.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds