Wall clock time and date at job start Tue Mar 31 2020 10:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47432 * 2 1 4 4 C 1.50700 * 109.46923 * 240.00002 * 2 1 3 5 5 H 1.08004 * 120.00440 * 240.00031 * 4 2 1 6 6 C 1.37878 * 120.00213 * 60.00167 * 4 2 1 7 7 N 1.31516 * 119.99839 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47031 * 60.00063 * 8 6 4 10 10 H 1.48495 * 109.47430 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47170 * 300.00427 * 8 6 4 12 12 C 1.53001 * 109.47523 * 120.00147 * 2 1 3 13 13 N 1.46496 * 109.46740 * 300.00026 * 12 2 1 14 14 C 1.34784 * 119.99954 * 179.97438 * 13 12 2 15 15 O 1.21595 * 119.99912 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99776 * 180.27353 * 14 13 12 17 17 C 1.40121 * 119.99725 * 175.24043 * 16 14 13 18 18 C 1.38822 * 120.04553 * 34.68792 * 17 16 14 19 19 C 1.38130 * 119.96748 * 179.74409 * 18 17 16 20 20 C 1.38484 * 120.06383 * 0.55189 * 19 18 17 21 21 F 1.35105 * 119.95240 * 179.72224 * 20 19 18 22 22 C 1.38447 * 120.09620 * 359.70561 * 20 19 18 23 23 C 1.38230 * 120.03327 * 0.02562 * 22 20 19 24 24 Cl 1.73607 * 120.03486 * 179.97438 * 23 22 20 25 25 H 1.09004 * 109.46892 * 299.99951 * 1 2 3 26 26 H 1.09004 * 109.47055 * 59.99634 * 1 2 3 27 27 H 1.09003 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47039 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46648 * 300.00126 * 3 2 1 30 30 H 1.08996 * 109.47171 * 59.99905 * 3 2 1 31 31 H 0.97001 * 119.99934 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47212 * 179.97438 * 12 2 1 33 33 H 1.09003 * 109.47009 * 59.99660 * 12 2 1 34 34 H 0.97002 * 120.00346 * 359.97438 * 13 12 2 35 35 H 0.96992 * 120.00392 * 355.24726 * 16 14 13 36 36 H 1.08002 * 120.01794 * 0.02562 * 18 17 16 37 37 H 1.07996 * 119.97095 * 180.25534 * 19 18 17 38 38 H 1.08009 * 119.98337 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0083 10 1 1.8267 -0.4199 -5.2205 11 1 3.8073 -1.1191 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4914 3.6695 15 8 2.5753 -1.4806 3.7810 16 7 1.4231 0.1407 4.7699 17 6 1.6773 -0.3940 6.0399 18 6 2.8727 -1.0540 6.2896 19 6 3.1239 -1.5759 7.5436 20 6 2.1794 -1.4512 8.5488 21 9 2.4251 -1.9674 9.7729 22 6 0.9841 -0.7981 8.3012 23 6 0.7310 -0.2695 7.0493 24 17 -0.7682 0.5489 6.7385 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7089 1.1614 -3.4844 32 1 3.1300 -0.7216 1.2489 33 1 1.6767 -1.7490 1.2492 34 1 0.9943 0.7582 2.3564 35 1 0.9205 0.9657 4.6827 36 1 3.6080 -1.1556 5.5051 37 1 4.0556 -2.0858 7.7391 38 1 0.2490 -0.7016 9.0866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459229696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:20 Heat of formation + Delta-G solvation = -72.792324 kcal Electronic energy + Delta-G solvation = -23348.925377 eV Core-core repulsion = 19552.153036 eV Total energy + Delta-G solvation = -3796.772341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.93715 -41.80713 -39.91409 -38.21009 -37.55064 -35.77444 -35.04927 -32.76287 -32.04992 -30.11231 -27.54579 -27.43467 -26.64568 -24.52993 -23.69564 -22.06876 -20.62893 -19.88382 -19.01732 -18.56646 -17.80595 -17.47130 -16.75056 -16.60549 -16.53214 -16.15795 -15.84567 -15.38007 -14.95228 -14.85088 -14.73691 -14.57031 -14.24513 -14.01016 -13.98968 -13.20239 -13.08290 -12.71220 -12.63541 -12.60235 -12.42153 -12.23943 -12.16494 -12.12332 -11.53796 -11.46852 -11.26788 -11.13517 -10.70006 -10.38570 -10.07949 -10.01468 -9.13566 -8.01176 -6.16724 -0.16586 -0.00290 0.88299 1.45518 1.45891 1.49407 1.54635 1.94197 2.43507 2.47007 3.15242 3.19542 3.22960 3.58021 3.88104 4.08110 4.15160 4.41173 4.52895 4.54582 4.72680 4.84215 4.94349 5.00068 5.07356 5.07632 5.11246 5.21830 5.28035 5.36321 5.57607 5.68762 5.68999 5.70814 5.83893 6.17051 6.23280 6.44659 6.87716 6.91338 7.41165 7.51212 8.97495 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.002795 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.234381 B =10014.651293 C =10743.610870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.053 3.947 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.166 3.834 13 N -0.717 5.717 14 C 0.701 3.299 15 O -0.611 6.611 16 N -0.674 5.674 17 C 0.162 3.838 18 C -0.095 4.095 19 C -0.122 4.122 20 C 0.086 3.914 21 F -0.136 7.136 22 C -0.120 4.120 23 C -0.045 4.045 24 Cl -0.043 7.043 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.407 0.593 35 H 0.421 0.579 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 1.741 21.151 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.202 1.202 12 C 0.042 3.958 13 N -0.371 5.371 14 C 0.402 3.598 15 O -0.491 6.491 16 N -0.323 5.323 17 C 0.065 3.935 18 C -0.116 4.116 19 C -0.141 4.141 20 C 0.066 3.934 21 F -0.114 7.114 22 C -0.139 4.139 23 C -0.075 4.075 24 Cl -0.014 7.014 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.244 0.756 35 H 0.259 0.741 36 H 0.164 0.836 37 H 0.180 0.820 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.031 1.048 20.979 21.030 hybrid contribution -0.243 0.201 -1.125 1.169 sum -1.274 1.249 19.853 19.933 Atomic orbital electron populations 1.21683 0.97227 0.98678 1.00360 1.18345 0.93156 0.93061 0.90208 1.21680 0.98054 0.97816 1.00394 1.21261 1.31773 1.12258 0.91500 0.93484 1.25432 0.95146 0.95564 1.00932 1.69900 1.36988 1.23272 1.23633 0.85845 0.78678 0.78814 0.79637 1.20294 1.21014 1.20186 1.21222 0.97174 0.94774 0.82585 1.45242 1.55124 1.33123 1.03641 1.16021 0.80315 0.82535 0.80934 1.90876 1.43412 1.28786 1.85999 1.42467 1.59107 1.28261 1.02446 1.17425 0.93224 0.98920 0.83915 1.21194 0.95607 0.97671 0.97130 1.21344 1.00723 1.00755 0.91275 1.17452 0.95313 0.99565 0.81089 1.91519 1.94466 1.84836 1.40611 1.20946 0.97615 0.98854 0.96536 1.20402 0.88648 1.03609 0.94850 1.98391 1.30225 1.77039 1.95791 0.94467 0.91972 0.96311 0.96122 0.92004 0.94390 0.93070 0.93789 0.94120 0.75555 0.74062 0.83631 0.81978 0.81273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 4 C -0.53 -27.20 8.01 25.60 0.21 -27.00 16 5 H 0.05 2.45 7.74 -2.91 -0.02 2.43 16 6 C 0.03 1.50 5.15 84.65 0.44 1.94 16 7 N -0.90 -47.07 9.35 21.45 0.20 -46.87 16 8 Si 0.94 41.83 29.54 68.60 2.03 43.86 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 C 0.17 6.68 4.50 86.38 0.39 7.07 16 13 N -0.72 -22.97 4.96 -478.53 -2.37 -25.34 16 14 C 0.70 22.23 8.41 179.05 1.51 23.73 16 15 O -0.61 -23.46 13.76 -4.02 -0.06 -23.52 16 16 N -0.67 -16.17 5.06 -317.02 -1.60 -17.77 16 17 C 0.16 3.78 6.31 38.12 0.24 4.02 16 18 C -0.10 -2.27 8.70 22.38 0.19 -2.07 16 19 C -0.12 -2.34 10.02 22.30 0.22 -2.11 16 20 C 0.09 1.59 7.30 22.38 0.16 1.76 16 21 F -0.14 -2.54 17.27 44.97 0.78 -1.76 16 22 C -0.12 -2.05 9.80 22.32 0.22 -1.83 16 23 C -0.05 -0.88 6.34 22.43 0.14 -0.74 16 24 Cl -0.04 -0.76 27.96 -2.72 -0.08 -0.83 16 25 H 0.04 1.32 6.86 -2.38 -0.02 1.30 16 26 H 0.06 2.99 6.07 -2.38 -0.01 2.98 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 2.96 6.07 -2.39 -0.01 2.94 16 30 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 31 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.41 11.21 6.18 -92.71 -0.57 10.64 16 35 H 0.42 7.90 8.10 -92.71 -0.75 7.15 16 36 H 0.15 4.02 6.20 -2.91 -0.02 4.01 16 37 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -57.75 331.48 3.55 -54.20 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.20 Total: 20.18 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 4.85 Total: -2.13 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -3.78 Total: -89.99 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.06 Total: -23.52 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.83 kcal Total: -57.75 3.55 -54.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459229696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.594 kcal (2) G-P(sol) polarization free energy of solvation -57.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds