Wall clock time and date at job start Tue Mar 31 2020 10:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46802 * 2 1 4 4 C 1.50692 * 109.47095 * 239.99882 * 2 1 3 5 5 H 1.08002 * 120.00256 * 239.99373 * 4 2 1 6 6 C 1.37886 * 120.00208 * 60.00345 * 4 2 1 7 7 N 1.31515 * 119.99494 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00104 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46905 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46697 * 119.99717 * 8 6 4 11 11 H 1.48495 * 109.46754 * 239.99726 * 8 6 4 12 12 C 1.52998 * 109.47028 * 120.00020 * 2 1 3 13 13 N 1.46506 * 109.47015 * 299.99732 * 12 2 1 14 14 C 1.34781 * 120.00088 * 179.97438 * 13 12 2 15 15 O 1.21588 * 119.99507 * 0.02562 * 14 13 12 16 16 N 1.34771 * 119.99882 * 180.02562 * 14 13 12 17 17 C 1.40083 * 119.99671 * 185.63823 * 16 14 13 18 18 C 1.38817 * 120.07074 * 24.78044 * 17 16 14 19 19 C 1.38145 * 119.97827 * 179.74722 * 18 17 16 20 20 C 1.38266 * 120.11856 * 0.55273 * 19 18 17 21 21 C 1.38372 * 120.14025 * 359.69703 * 20 19 18 22 22 Cl 1.73607 * 119.98915 * 180.02562 * 21 20 19 23 23 C 1.38412 * 120.02347 * 0.02934 * 21 20 19 24 24 F 1.35098 * 120.06270 * 180.02562 * 23 21 20 25 25 H 1.09001 * 109.47461 * 300.00205 * 1 2 3 26 26 H 1.09003 * 109.47163 * 59.99953 * 1 2 3 27 27 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46486 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47120 * 299.99509 * 3 2 1 30 30 H 1.08996 * 109.46980 * 60.00359 * 3 2 1 31 31 H 0.97001 * 119.99706 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47357 * 180.02562 * 12 2 1 33 33 H 1.08999 * 109.47271 * 59.99943 * 12 2 1 34 34 H 0.97004 * 120.00008 * 0.02562 * 13 12 2 35 35 H 0.96996 * 120.00054 * 5.36733 * 16 14 13 36 36 H 1.08007 * 120.01065 * 0.02562 * 18 17 16 37 37 H 1.07999 * 119.94339 * 180.26989 * 19 18 17 38 38 H 1.08001 * 119.93135 * 179.72779 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1484 -2.2857 -3.6037 10 1 1.1678 -1.5866 -4.8164 11 1 3.1472 -0.1858 -4.8160 12 6 2.0399 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.5757 -1.4799 3.7811 16 7 1.4271 0.1438 4.7699 17 6 1.8596 -0.2624 6.0389 18 6 3.0748 -0.9178 6.1828 19 6 3.5019 -1.3129 7.4357 20 6 2.7158 -1.0669 8.5462 21 6 1.5012 -0.4185 8.4079 22 17 0.5176 -0.1110 9.8050 23 6 1.0702 -0.0151 7.1560 24 9 -0.1152 0.6185 7.0200 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7082 1.1609 -3.4844 32 1 3.1300 -0.7209 1.2495 33 1 1.6766 -1.7489 1.2492 34 1 0.9937 0.7579 2.3564 35 1 0.8071 0.8846 4.6830 36 1 3.6883 -1.1149 5.3159 37 1 4.4495 -1.8189 7.5475 38 1 3.0506 -1.3810 9.5238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459232498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:35 Heat of formation + Delta-G solvation = -70.123576 kcal Electronic energy + Delta-G solvation = -23438.893803 eV Core-core repulsion = 19642.237188 eV Total energy + Delta-G solvation = -3796.656615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.07106 -41.79264 -39.86908 -38.31549 -37.57984 -35.86604 -35.08896 -32.80750 -31.46945 -30.52256 -27.56475 -27.46719 -26.73062 -24.44159 -23.70290 -22.09406 -20.65511 -19.93771 -19.14278 -18.35247 -17.82598 -17.45987 -16.97957 -16.63113 -16.52967 -16.44365 -15.67766 -15.56639 -15.26447 -14.81325 -14.74633 -14.32479 -14.08567 -14.00914 -13.34663 -13.21248 -13.11785 -13.02594 -12.77311 -12.63392 -12.56173 -12.26116 -12.13026 -12.07937 -11.63200 -11.48993 -11.28016 -11.12268 -10.70014 -10.40413 -10.07382 -9.78600 -9.19997 -8.02294 -6.17717 -0.09560 -0.02057 0.85270 1.42230 1.45796 1.49898 1.56717 1.91545 2.46181 2.49939 2.92788 3.11431 3.22037 3.72958 3.82019 4.16933 4.26491 4.40022 4.52770 4.63243 4.70616 4.85991 4.97233 5.03173 5.05402 5.09566 5.19903 5.20631 5.27509 5.37679 5.55654 5.67154 5.68165 5.73129 5.79840 6.15041 6.21650 6.43350 6.85323 6.87469 7.35220 7.50346 8.96864 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.035688 B = 0.002571 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.390652 B =10886.336515 C =11402.108731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.526 4.526 5 H 0.048 0.952 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.945 3.055 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.166 3.834 13 N -0.716 5.716 14 C 0.702 3.298 15 O -0.606 6.606 16 N -0.674 5.674 17 C 0.144 3.856 18 C -0.119 4.119 19 C -0.081 4.081 20 C -0.098 4.098 21 C -0.058 4.058 22 Cl -0.046 7.046 23 C 0.055 3.945 24 F -0.133 7.133 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.019 0.981 28 H 0.021 0.979 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.259 0.741 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.407 0.593 35 H 0.421 0.579 36 H 0.146 0.854 37 H 0.173 0.827 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 0.633 22.474 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.564 4.564 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.772 3.228 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.042 3.958 13 N -0.371 5.371 14 C 0.402 3.598 15 O -0.486 6.486 16 N -0.321 5.321 17 C 0.046 3.954 18 C -0.140 4.140 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.086 4.086 22 Cl -0.017 7.017 23 C 0.032 3.968 24 F -0.112 7.112 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.244 0.756 35 H 0.259 0.741 36 H 0.164 0.836 37 H 0.190 0.810 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.971 -0.058 22.399 22.486 hybrid contribution -0.801 0.488 -1.313 1.613 sum 1.171 0.430 21.087 21.124 Atomic orbital electron populations 1.21693 0.97283 0.98727 1.00343 1.18361 0.93132 0.93074 0.90297 1.21684 0.98116 0.97834 1.00342 1.21296 1.31586 1.12161 0.91383 0.93415 1.25453 0.95169 0.95582 1.01012 1.69918 1.37069 1.23384 1.23517 0.85710 0.78080 0.78773 0.80266 1.19810 1.20933 1.20839 1.21251 0.97270 0.94802 0.82454 1.45286 1.55192 1.32952 1.03651 1.15982 0.80493 0.82446 0.80836 1.90845 1.43692 1.28137 1.85905 1.42395 1.49836 1.37235 1.02659 1.17580 0.94088 1.00917 0.82767 1.21617 0.93794 0.98222 1.00321 1.21443 1.00981 0.97748 0.89779 1.21305 0.91052 0.97679 1.01733 1.20876 0.96171 1.04953 0.86632 1.98387 1.69784 1.94583 1.38962 1.17068 0.83496 1.03650 0.92599 1.91489 1.43367 1.79819 1.96477 0.94576 0.91945 0.96217 0.96018 0.91994 0.94529 0.93092 0.93602 0.93984 0.75559 0.74089 0.83612 0.80983 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.71 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.22 8.08 71.98 0.58 -4.63 16 4 C -0.53 -26.98 8.01 25.60 0.21 -26.77 16 5 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 6 C 0.03 1.42 5.15 84.66 0.44 1.86 16 7 N -0.90 -47.24 9.35 21.45 0.20 -47.04 16 8 Si 0.94 41.87 29.54 68.60 2.03 43.89 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.17 6.67 4.50 86.38 0.39 7.06 16 13 N -0.72 -23.29 4.96 -478.52 -2.37 -25.66 16 14 C 0.70 22.70 8.37 179.05 1.50 24.20 16 15 O -0.61 -23.28 13.51 -3.99 -0.05 -23.34 16 16 N -0.67 -17.27 5.32 -317.01 -1.69 -18.95 16 17 C 0.14 3.59 6.44 38.14 0.25 3.84 16 18 C -0.12 -2.80 8.72 22.39 0.20 -2.61 16 19 C -0.08 -1.30 10.04 22.25 0.22 -1.08 16 20 C -0.10 -1.45 9.82 22.31 0.22 -1.23 16 21 C -0.06 -1.12 6.32 22.34 0.14 -0.98 16 22 Cl -0.05 -0.83 28.61 -2.72 -0.08 -0.90 16 23 C 0.06 1.26 7.28 22.49 0.16 1.43 16 24 F -0.13 -3.17 16.39 44.97 0.74 -2.43 16 25 H 0.04 1.29 6.86 -2.39 -0.02 1.28 16 26 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 30 H 0.04 1.29 6.86 -2.39 -0.02 1.28 16 31 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 11.48 6.18 -92.71 -0.57 10.91 16 35 H 0.42 8.66 8.48 -92.71 -0.79 7.87 16 36 H 0.15 4.09 5.79 -2.91 -0.02 4.07 16 37 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -59.17 331.36 3.39 -55.78 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.23 Total: 19.99 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 4.85 Total: -1.34 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -3.86 Total: -91.66 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.74 Total: -2.43 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.90 kcal Total: -59.17 3.39 -55.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459232498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.340 kcal (2) G-P(sol) polarization free energy of solvation -59.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds