Wall clock time and date at job start Tue Mar 31 2020 10:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46989 * 2 1 4 4 C 1.50696 * 109.47465 * 240.00319 * 2 1 3 5 5 H 1.08011 * 119.99863 * 244.19789 * 4 2 1 6 6 C 1.37877 * 120.00221 * 64.19116 * 4 2 1 7 7 N 1.31508 * 120.00132 * 4.70577 * 6 4 2 8 8 Si 1.86805 * 119.99947 * 184.70886 * 6 4 2 9 9 H 1.48494 * 109.47497 * 94.99836 * 8 6 4 10 10 H 1.48502 * 109.46784 * 215.00186 * 8 6 4 11 11 H 1.48507 * 109.46829 * 334.99896 * 8 6 4 12 12 C 1.52998 * 109.47091 * 119.99642 * 2 1 3 13 13 N 1.46492 * 109.47462 * 300.00080 * 12 2 1 14 14 C 1.34777 * 120.00255 * 180.02562 * 13 12 2 15 15 O 1.21590 * 120.00075 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00207 * 180.02562 * 14 13 12 17 17 C 1.40078 * 120.00026 * 185.92774 * 16 14 13 18 18 C 1.38785 * 120.06692 * 24.67981 * 17 16 14 19 19 C 1.38261 * 119.93758 * 179.97438 * 18 17 16 20 20 Cl 1.73602 * 119.95764 * 179.97438 * 19 18 17 21 21 C 1.38391 * 120.08510 * 0.02562 * 19 18 17 22 22 C 1.38258 * 120.14063 * 359.95668 * 21 19 18 23 23 C 1.38304 * 120.05814 * 0.04154 * 22 21 19 24 24 F 1.35100 * 120.04550 * 180.25255 * 23 22 21 25 25 H 1.08998 * 109.47173 * 295.00626 * 1 2 3 26 26 H 1.09000 * 109.47247 * 55.00978 * 1 2 3 27 27 H 1.09000 * 109.46701 * 175.01162 * 1 2 3 28 28 H 1.09000 * 109.47155 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46503 * 299.99872 * 3 2 1 30 30 H 1.08997 * 109.46960 * 59.99770 * 3 2 1 31 31 H 0.97004 * 120.00076 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47078 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.47352 * 60.00549 * 12 2 1 34 34 H 0.96998 * 119.99836 * 0.02562 * 13 12 2 35 35 H 0.97006 * 119.99883 * 5.92330 * 16 14 13 36 36 H 1.07991 * 120.03504 * 359.95090 * 18 17 16 37 37 H 1.08001 * 119.92696 * 179.97438 * 21 19 18 38 38 H 1.07994 * 119.97194 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.5963 -1.6263 -1.1328 6 6 1.7722 -0.1910 -2.4809 7 7 1.1667 0.9706 -2.5975 8 14 2.2796 -1.1374 -4.0094 9 1 1.1321 -1.9449 -4.4954 10 1 2.6961 -0.1822 -5.0674 11 1 3.4141 -2.0374 -3.6804 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5775 -1.4787 3.7811 16 7 1.4281 0.1444 4.7700 17 6 1.8661 -0.2571 6.0385 18 6 3.0837 -0.9080 6.1798 19 6 3.5137 -1.3027 7.4332 20 17 5.0363 -2.1175 7.6105 21 6 2.7314 -1.0499 8.5464 22 6 1.5180 -0.4014 8.4096 23 6 1.0822 -0.0040 7.1586 24 9 -0.1011 0.6342 7.0257 25 1 -0.3633 0.4344 0.9313 26 1 -0.3634 0.5893 -0.8419 27 1 -0.3633 -1.0238 -0.0894 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.9832 1.3358 -3.4772 32 1 3.1300 -0.7208 1.2495 33 1 1.6768 -1.7489 1.2493 34 1 0.9937 0.7578 2.3564 35 1 0.8011 0.8795 4.6835 36 1 3.6945 -1.1064 5.3117 37 1 3.0696 -1.3597 9.5242 38 1 0.9099 -0.2052 9.2802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459234745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:39 Heat of formation + Delta-G solvation = -56.484836 kcal Electronic energy + Delta-G solvation = -23457.252708 eV Core-core repulsion = 19661.187513 eV Total energy + Delta-G solvation = -3796.065195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.15040 -40.62043 -38.84831 -36.82757 -36.43366 -34.73631 -33.48959 -31.14503 -30.59667 -29.45349 -25.79752 -25.72097 -25.02676 -23.54700 -22.64664 -20.87472 -18.95042 -18.80517 -17.97951 -17.38511 -16.53580 -15.99422 -15.85535 -15.60890 -15.22179 -14.80575 -14.57097 -14.22135 -13.85443 -13.58990 -13.44800 -13.02569 -12.93739 -12.73567 -12.26038 -12.03470 -11.69914 -11.49675 -11.23277 -11.16416 -10.92688 -10.74885 -10.62444 -10.43273 -10.22464 -9.92600 -9.69197 -9.42263 -8.95690 -8.84617 -8.66690 -8.43429 -8.16924 -6.05138 -4.17051 0.70328 0.91224 1.89515 2.61292 3.03054 3.25709 3.33438 3.37424 3.47006 3.89044 4.27260 4.37969 4.44503 4.74947 4.93892 5.11472 5.19811 5.39609 5.71867 5.79026 6.01805 6.06536 6.08541 6.25267 6.41357 6.63381 6.66089 6.73755 6.76710 6.90496 6.95098 7.02679 7.29447 7.49098 7.64716 7.89730 8.05477 8.16645 8.35217 8.64650 8.83916 9.49551 10.94264 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.021766 B = 0.002904 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.079111 B = 9640.964821 C =10646.736332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.056 3.944 3 C -0.137 4.137 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.147 3.853 13 N -0.721 5.721 14 C 0.697 3.303 15 O -0.575 6.575 16 N -0.685 5.685 17 C 0.167 3.833 18 C -0.102 4.102 19 C -0.021 4.021 20 Cl -0.060 7.060 21 C -0.113 4.113 22 C -0.118 4.118 23 C 0.060 3.940 24 F -0.135 7.135 25 H 0.008 0.992 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.026 0.974 29 H 0.100 0.900 30 H 0.001 0.999 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.397 0.603 35 H 0.411 0.589 36 H 0.171 0.829 37 H 0.142 0.858 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.306 0.689 20.688 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.055 3.945 3 C -0.194 4.194 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.025 3.975 13 N -0.374 5.374 14 C 0.397 3.603 15 O -0.453 6.453 16 N -0.332 5.332 17 C 0.068 3.932 18 C -0.123 4.123 19 C -0.049 4.049 20 Cl -0.031 7.031 21 C -0.133 4.133 22 C -0.137 4.137 23 C 0.037 3.963 24 F -0.114 7.114 25 H 0.027 0.973 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.118 0.882 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.233 0.767 35 H 0.247 0.753 36 H 0.188 0.812 37 H 0.159 0.841 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.976 -0.121 20.457 20.481 hybrid contribution -0.514 0.317 -0.946 1.122 sum 0.463 0.196 19.511 19.518 Atomic orbital electron populations 1.21789 0.97980 0.99841 0.98817 1.18385 0.92506 0.93175 0.90425 1.21971 0.98683 0.98155 1.00641 1.20974 1.34944 1.08817 0.89871 0.92296 1.24876 0.94887 0.94727 0.98918 1.69769 1.42324 1.16938 1.23306 0.86542 0.78868 0.79764 0.82627 1.20729 1.21265 1.19811 1.21729 0.98275 0.95547 0.81961 1.45603 1.54828 1.32731 1.04277 1.16036 0.80924 0.82780 0.80540 1.90875 1.42276 1.26764 1.85370 1.42671 1.49448 1.37826 1.03230 1.17362 0.92878 0.99360 0.83552 1.21340 0.94612 0.98405 0.97955 1.20754 0.89571 1.00164 0.94385 1.98382 1.29405 1.77494 1.97858 1.20814 0.93798 1.00359 0.98341 1.20837 0.97153 1.00023 0.95728 1.17401 0.83066 1.02174 0.93658 1.91493 1.43686 1.79567 1.96612 0.97321 0.90895 0.94992 0.95512 0.88154 0.97974 0.92977 0.92362 0.92533 0.76732 0.75275 0.81170 0.84054 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.13 37.16 0.30 -2.42 16 2 C 0.06 1.25 0.51 -155.66 -0.08 1.17 16 3 C -0.14 -3.01 8.02 37.16 0.30 -2.71 16 4 C -0.51 -12.97 8.01 -34.44 -0.28 -13.24 16 5 H 0.06 1.52 7.75 -52.48 -0.41 1.12 16 6 C 0.07 1.74 5.16 -17.82 -0.09 1.64 16 7 N -0.88 -23.11 9.45 55.43 0.52 -22.59 16 8 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 C 0.15 2.99 4.50 -4.05 -0.02 2.97 16 13 N -0.72 -12.13 4.92 -65.23 -0.32 -12.45 16 14 C 0.70 11.63 8.37 -86.92 -0.73 10.90 16 15 O -0.58 -11.35 13.51 5.29 0.07 -11.27 16 16 N -0.69 -9.06 5.32 -14.17 -0.08 -9.13 16 17 C 0.17 2.17 6.44 -83.59 -0.54 1.63 16 18 C -0.10 -1.38 8.50 -39.37 -0.33 -1.71 16 19 C -0.02 -0.24 6.32 -39.52 -0.25 -0.49 16 20 Cl -0.06 -0.66 28.95 -51.86 -1.50 -2.16 16 21 C -0.11 -1.01 9.82 -39.52 -0.39 -1.40 16 22 C -0.12 -1.04 10.02 -39.55 -0.40 -1.44 16 23 C 0.06 0.66 7.31 -39.26 -0.29 0.37 16 24 F -0.13 -1.49 16.81 2.25 0.04 -1.45 16 25 H 0.01 0.15 6.73 -51.93 -0.35 -0.20 16 26 H 0.07 1.73 6.72 -51.93 -0.35 1.38 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 2.47 5.59 -51.93 -0.29 2.18 16 30 H 0.00 0.03 6.86 -51.93 -0.36 -0.33 16 31 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.40 5.95 6.18 -40.82 -0.25 5.70 16 35 H 0.41 4.36 8.47 -40.82 -0.35 4.02 16 36 H 0.17 2.69 5.79 -52.49 -0.30 2.39 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 332.01 15.07 5.00 5.00 Total: -1.00 -27.57 332.01 -8.39 -35.96 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.33 Total: 7.45 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.79 Total: -4.73 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.13 Total: -44.17 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.57 -8.39 -35.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459234745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.525 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds