Wall clock time and date at job start Tue Mar 31 2020 10:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47322 * 352.19840 * 3 2 1 5 5 C 1.36931 * 120.00138 * 95.08322 * 4 3 2 6 6 H 1.07995 * 120.00169 * 162.00017 * 5 4 3 7 7 C 1.38818 * 119.99707 * 341.99675 * 5 4 3 8 8 N 1.31623 * 120.00029 * 341.28212 * 7 5 4 9 9 Si 1.86804 * 119.99957 * 161.28394 * 7 5 4 10 10 H 1.48502 * 109.46865 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47094 * 119.99664 * 9 7 5 12 12 H 1.48498 * 109.46782 * 239.99876 * 9 7 5 13 13 C 1.46506 * 119.99758 * 275.07971 * 4 3 2 14 14 C 1.50696 * 109.46757 * 90.00184 * 13 4 3 15 15 C 1.38828 * 120.35561 * 90.00078 * 14 13 4 16 16 C 1.38382 * 118.48394 * 179.97438 * 15 14 13 17 17 C 1.38915 * 119.11224 * 359.97438 * 16 15 14 18 18 O 1.35679 * 119.68582 * 179.97438 * 17 16 15 19 19 C 1.42897 * 117.00534 * 180.02562 * 18 17 16 20 20 C 1.52994 * 109.47581 * 180.02562 * 19 18 17 21 21 F 1.39896 * 109.47033 * 59.99765 * 20 19 18 22 22 F 1.39896 * 109.47391 * 180.02562 * 20 19 18 23 23 F 1.39908 * 109.46945 * 300.00322 * 20 19 18 24 24 N 1.32244 * 120.63328 * 0.02722 * 17 16 15 25 25 C 1.31967 * 121.64406 * 359.68298 * 24 17 16 26 26 H 4.40642 * 5.51346 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47493 * 112.20221 * 3 2 1 28 28 H 1.09007 * 109.46954 * 232.19742 * 3 2 1 29 29 H 0.96991 * 119.99789 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.46810 * 209.99654 * 13 4 3 31 31 H 1.08995 * 109.47135 * 329.99971 * 13 4 3 32 32 H 1.08000 * 120.75691 * 359.97438 * 15 14 13 33 33 H 1.08001 * 120.44216 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.47127 * 300.01030 * 19 18 17 35 35 H 1.09006 * 109.46900 * 60.00104 * 19 18 17 36 36 H 1.08001 * 119.58284 * 180.31134 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3676 0.1875 5 6 3.4626 -2.1326 -0.8999 6 1 4.0831 -3.0079 -0.7771 7 6 2.9971 -1.7830 -2.1601 8 7 1.9704 -0.9681 -2.2797 9 14 3.8277 -2.4692 -3.6861 10 1 4.9498 -3.3545 -3.2832 11 1 2.8422 -3.2477 -4.4784 12 1 4.3518 -1.3502 -4.5098 13 6 3.2735 -1.9172 1.5384 14 6 1.9869 -2.5908 1.9409 15 6 1.7843 -3.9367 1.6677 16 6 0.5888 -4.5161 2.0549 17 6 -0.3623 -3.7362 2.7007 18 8 -1.5387 -4.2922 3.0850 19 6 -2.4756 -3.4378 3.7439 20 6 -3.7316 -4.2359 4.0993 21 9 -3.3874 -5.2932 4.9483 22 9 -4.6490 -3.3993 4.7439 23 9 -4.3069 -4.7451 2.9301 24 7 -0.1325 -2.4567 2.9435 25 6 0.9999 -1.8777 2.5913 26 1 -1.0498 -0.0004 -0.0001 27 1 3.0092 0.3891 -0.9514 28 1 3.0090 0.6308 0.8120 29 1 1.6449 -0.7242 -3.1602 30 1 4.0847 -2.6451 1.5531 31 1 3.4959 -1.1112 2.2376 32 1 2.5425 -4.5184 1.1643 33 1 0.3981 -5.5609 1.8585 34 1 -2.0274 -3.0414 4.6550 35 1 -2.7434 -2.6138 3.0825 36 1 1.1545 -0.8316 2.8105 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491802674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:30 Heat of formation + Delta-G solvation = -66.569123 kcal Electronic energy + Delta-G solvation = -25760.531517 eV Core-core repulsion = 21412.232355 eV Total energy + Delta-G solvation = -4348.299163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.28625 -47.84496 -47.73554 -40.34093 -38.09994 -36.07793 -32.56465 -31.82996 -31.50109 -30.58163 -29.32305 -26.30501 -25.64628 -24.10302 -22.82234 -22.43495 -20.79896 -19.09488 -18.80828 -18.02394 -17.84627 -17.49367 -16.49062 -16.07135 -16.01276 -15.35696 -14.70968 -14.65183 -14.57878 -14.20534 -14.09448 -13.92085 -13.91308 -13.85080 -13.67641 -13.38012 -13.07308 -12.99905 -12.62085 -11.89799 -11.71317 -11.57238 -11.29583 -11.18382 -11.00535 -10.78169 -10.32914 -10.12493 -9.39490 -9.29897 -9.00352 -8.92670 -8.48950 -7.97811 -7.13993 -5.89651 -3.32671 1.58502 1.73075 2.15593 2.96145 3.29341 3.37756 3.39338 3.58909 3.81361 4.07227 4.18875 4.27379 4.35358 4.46888 4.57916 4.90495 5.06155 5.23480 5.39121 5.40455 5.51687 5.61651 5.71426 5.82737 5.90891 6.23444 6.36366 6.42824 6.63659 6.77565 6.89542 7.16252 7.35103 7.39706 7.62783 8.15639 8.18371 8.98263 9.17413 9.62854 10.08035 11.12268 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.003349 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.864045 B = 8358.386963 C = 8399.448620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.095 4.095 3 C 0.267 3.733 4 N -0.575 5.575 5 C -0.265 4.265 6 H 0.077 0.923 7 C 0.006 3.994 8 N -0.885 5.885 9 Si 0.904 3.096 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.288 1.288 13 C 0.183 3.817 14 C -0.156 4.156 15 C -0.027 4.027 16 C -0.181 4.181 17 C 0.291 3.709 18 O -0.300 6.300 19 C 0.031 3.969 20 C 0.462 3.538 21 F -0.177 7.177 22 F -0.174 7.174 23 F -0.175 7.175 24 N -0.540 5.540 25 C 0.148 3.852 26 H 0.185 0.815 27 H 0.099 0.901 28 H 0.038 0.962 29 H 0.255 0.745 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 -3.130 12.415 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.098 4.098 3 C 0.142 3.858 4 N -0.293 5.293 5 C -0.394 4.394 6 H 0.095 0.905 7 C -0.194 4.194 8 N -0.527 5.527 9 Si 0.733 3.267 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.214 1.214 13 C 0.056 3.944 14 C -0.161 4.161 15 C -0.054 4.054 16 C -0.202 4.202 17 C 0.113 3.887 18 O -0.209 6.209 19 C -0.047 4.047 20 C 0.408 3.592 21 F -0.158 7.158 22 F -0.156 7.156 23 F -0.157 7.157 24 N -0.262 5.262 25 C -0.008 4.008 26 H 0.202 0.798 27 H 0.116 0.884 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.635 -2.853 12.619 14.112 hybrid contribution -0.073 -0.889 -1.484 1.731 sum -5.708 -3.743 11.135 13.061 Atomic orbital electron populations 1.24071 0.95213 1.04520 1.07699 1.24131 0.95108 0.96342 0.94192 1.17895 0.82920 0.85087 0.99917 1.44443 1.73885 1.10350 1.00620 1.19285 1.25073 1.09937 0.85088 0.90481 1.25001 0.96330 0.99747 0.98351 1.70094 1.22445 1.37715 1.22465 0.86212 0.78957 0.78292 0.83224 1.20181 1.21831 1.21431 1.19963 0.91101 0.95987 0.87348 1.21991 1.02105 0.94367 0.97684 1.21252 0.95473 0.94643 0.94018 1.20916 0.93873 1.01140 1.04239 1.19425 0.85210 0.89279 0.94807 1.86139 1.24726 1.36669 1.73323 1.23452 0.86644 0.92610 1.01946 1.20213 0.85581 0.78530 0.74925 1.93213 1.92032 1.58971 1.71623 1.93210 1.68653 1.71543 1.82149 1.93231 1.86318 1.87992 1.48127 1.67098 1.24420 1.09763 1.24967 1.22048 0.86792 0.98848 0.93136 0.79800 0.88358 0.94448 0.93398 0.91936 0.92715 0.84415 0.84892 0.87317 0.87185 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.60 19.08 29.55 0.56 -6.03 16 2 C -0.09 -2.17 10.26 -37.12 -0.38 -2.55 16 3 C 0.27 5.83 5.45 -6.83 -0.04 5.79 16 4 N -0.58 -12.65 2.49 -177.95 -0.44 -13.09 16 5 C -0.26 -6.50 9.68 -15.06 -0.15 -6.65 16 6 H 0.08 1.84 7.88 -52.49 -0.41 1.43 16 7 C 0.01 0.14 4.94 -17.43 -0.09 0.06 16 8 N -0.88 -23.98 9.28 55.49 0.52 -23.47 16 9 Si 0.90 20.51 29.59 -169.99 -5.03 15.48 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.18 3.25 5.85 -5.19 -0.03 3.22 16 14 C -0.16 -2.77 5.24 -104.48 -0.55 -3.31 16 15 C -0.03 -0.47 9.85 -39.31 -0.39 -0.86 16 16 C -0.18 -2.99 10.04 -39.28 -0.39 -3.38 16 17 C 0.29 4.93 7.49 -17.12 -0.13 4.80 16 18 O -0.30 -4.60 10.00 -18.74 -0.19 -4.79 16 19 C 0.03 0.38 5.27 37.15 0.20 0.58 16 20 C 0.46 5.40 3.32 37.15 0.12 5.52 16 21 F -0.18 -2.18 17.26 2.25 0.04 -2.14 16 22 F -0.17 -1.91 17.32 2.25 0.04 -1.87 16 23 F -0.18 -2.29 17.26 2.25 0.04 -2.26 16 24 N -0.54 -9.30 9.22 -13.33 -0.12 -9.42 16 25 C 0.15 2.57 9.68 -17.56 -0.17 2.40 16 26 H 0.18 3.66 7.80 -54.10 -0.42 3.24 16 27 H 0.10 2.38 6.44 -51.93 -0.33 2.05 16 28 H 0.04 0.70 7.97 -51.92 -0.41 0.28 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.06 1.04 7.98 -51.93 -0.41 0.63 16 31 H 0.05 0.84 7.89 -51.93 -0.41 0.43 16 32 H 0.14 2.19 8.06 -52.49 -0.42 1.76 16 33 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.11 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.11 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.15 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -28.56 334.53 -5.19 -33.75 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.65 Total: 3.16 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.42 Total: -0.41 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.05 Total: -45.98 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.19 Total: -4.79 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.12 Total: -6.26 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.56 -5.19 -33.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491802674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.817 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds