Wall clock time and date at job start Tue Mar 31 2020 10:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47322 * 352.19840 * 3 2 1 5 5 C 1.36931 * 120.00138 * 95.08322 * 4 3 2 6 6 H 1.07995 * 120.00169 * 162.00017 * 5 4 3 7 7 C 1.38818 * 119.99707 * 341.99675 * 5 4 3 8 8 N 1.31623 * 120.00029 * 341.28212 * 7 5 4 9 9 Si 1.86804 * 119.99957 * 161.28394 * 7 5 4 10 10 H 1.48502 * 109.46865 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47094 * 119.99664 * 9 7 5 12 12 H 1.48498 * 109.46782 * 239.99876 * 9 7 5 13 13 C 1.46506 * 119.99758 * 275.07971 * 4 3 2 14 14 C 1.50696 * 109.46757 * 90.00184 * 13 4 3 15 15 C 1.38828 * 120.35561 * 90.00078 * 14 13 4 16 16 C 1.38382 * 118.48394 * 179.97438 * 15 14 13 17 17 C 1.38915 * 119.11224 * 359.97438 * 16 15 14 18 18 O 1.35679 * 119.68582 * 179.97438 * 17 16 15 19 19 C 1.42897 * 117.00534 * 180.02562 * 18 17 16 20 20 C 1.52994 * 109.47581 * 180.02562 * 19 18 17 21 21 F 1.39896 * 109.47033 * 59.99765 * 20 19 18 22 22 F 1.39896 * 109.47391 * 180.02562 * 20 19 18 23 23 F 1.39908 * 109.46945 * 300.00322 * 20 19 18 24 24 N 1.32244 * 120.63328 * 0.02722 * 17 16 15 25 25 C 1.31967 * 121.64406 * 359.68298 * 24 17 16 26 26 H 4.40642 * 5.51346 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47493 * 112.20221 * 3 2 1 28 28 H 1.09007 * 109.46954 * 232.19742 * 3 2 1 29 29 H 0.96991 * 119.99789 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.46810 * 209.99654 * 13 4 3 31 31 H 1.08995 * 109.47135 * 329.99971 * 13 4 3 32 32 H 1.08000 * 120.75691 * 359.97438 * 15 14 13 33 33 H 1.08001 * 120.44216 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.47127 * 300.01030 * 19 18 17 35 35 H 1.09006 * 109.46900 * 60.00104 * 19 18 17 36 36 H 1.08001 * 119.58284 * 180.31134 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3676 0.1875 5 6 3.4626 -2.1326 -0.8999 6 1 4.0831 -3.0079 -0.7771 7 6 2.9971 -1.7830 -2.1601 8 7 1.9704 -0.9681 -2.2797 9 14 3.8277 -2.4692 -3.6861 10 1 4.9498 -3.3545 -3.2832 11 1 2.8422 -3.2477 -4.4784 12 1 4.3518 -1.3502 -4.5098 13 6 3.2735 -1.9172 1.5384 14 6 1.9869 -2.5908 1.9409 15 6 1.7843 -3.9367 1.6677 16 6 0.5888 -4.5161 2.0549 17 6 -0.3623 -3.7362 2.7007 18 8 -1.5387 -4.2922 3.0850 19 6 -2.4756 -3.4378 3.7439 20 6 -3.7316 -4.2359 4.0993 21 9 -3.3874 -5.2932 4.9483 22 9 -4.6490 -3.3993 4.7439 23 9 -4.3069 -4.7451 2.9301 24 7 -0.1325 -2.4567 2.9435 25 6 0.9999 -1.8777 2.5913 26 1 -1.0498 -0.0004 -0.0001 27 1 3.0092 0.3891 -0.9514 28 1 3.0090 0.6308 0.8120 29 1 1.6449 -0.7242 -3.1602 30 1 4.0847 -2.6451 1.5531 31 1 3.4959 -1.1112 2.2376 32 1 2.5425 -4.5184 1.1643 33 1 0.3981 -5.5609 1.8585 34 1 -2.0274 -3.0414 4.6550 35 1 -2.7434 -2.6138 3.0825 36 1 1.1545 -0.8316 2.8105 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491802674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:30 Heat of formation + Delta-G solvation = -82.157036 kcal Electronic energy + Delta-G solvation = -25761.207460 eV Core-core repulsion = 21412.232355 eV Total energy + Delta-G solvation = -4348.975105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.24735 -48.78448 -48.72596 -41.61330 -39.36425 -37.69382 -34.05528 -33.45911 -32.97815 -31.97501 -30.60215 -27.98701 -27.21644 -25.24394 -24.21253 -23.75125 -22.27301 -20.17948 -19.78086 -19.33568 -19.01041 -18.92687 -18.19341 -17.32267 -17.16400 -17.01435 -16.10506 -15.68367 -15.62351 -15.52731 -15.37993 -15.20120 -15.16567 -14.89421 -14.88046 -14.72228 -14.54052 -14.33011 -13.96083 -13.32661 -13.28038 -12.94450 -12.76521 -12.74520 -12.40658 -12.31271 -12.13293 -11.89851 -10.78838 -10.74053 -10.67932 -10.60978 -10.22588 -9.33100 -8.90611 -7.79220 -5.21674 0.27141 0.40526 1.11794 1.48648 1.53679 1.60590 1.91636 2.40066 2.58410 2.62014 2.66947 2.83656 2.90169 3.16621 3.35890 3.37422 3.95111 3.97183 4.04194 4.07147 4.15962 4.18566 4.23265 4.42944 4.63553 4.92525 4.96296 5.05952 5.13037 5.40227 5.49505 5.55072 5.69399 5.74547 6.08627 6.32778 6.86279 7.13988 7.44338 7.86254 8.27244 9.21114 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.003349 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.864045 B = 8358.386963 C = 8399.448620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.108 4.108 3 C 0.267 3.733 4 N -0.587 5.587 5 C -0.256 4.256 6 H 0.083 0.917 7 C -0.045 4.045 8 N -0.915 5.915 9 Si 0.955 3.045 10 H -0.264 1.264 11 H -0.306 1.306 12 H -0.295 1.295 13 C 0.183 3.817 14 C -0.168 4.168 15 C -0.034 4.034 16 C -0.189 4.189 17 C 0.287 3.713 18 O -0.307 6.307 19 C 0.029 3.971 20 C 0.471 3.529 21 F -0.179 7.179 22 F -0.167 7.167 23 F -0.184 7.184 24 N -0.545 5.545 25 C 0.144 3.856 26 H 0.201 0.799 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.243 0.757 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 -3.652 13.744 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 C -0.111 4.111 3 C 0.142 3.858 4 N -0.306 5.306 5 C -0.386 4.386 6 H 0.100 0.900 7 C -0.241 4.241 8 N -0.560 5.560 9 Si 0.785 3.215 10 H -0.188 1.188 11 H -0.234 1.234 12 H -0.222 1.222 13 C 0.057 3.943 14 C -0.173 4.173 15 C -0.060 4.060 16 C -0.209 4.209 17 C 0.109 3.891 18 O -0.215 6.215 19 C -0.048 4.048 20 C 0.416 3.584 21 F -0.161 7.161 22 F -0.149 7.149 23 F -0.165 7.165 24 N -0.268 5.268 25 C -0.012 4.012 26 H 0.218 0.782 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.427 -3.399 13.993 15.389 hybrid contribution -0.174 -0.771 -1.735 1.906 sum -5.601 -4.169 12.259 14.108 Atomic orbital electron populations 1.24594 0.95989 1.04406 1.07552 1.24496 0.95734 0.96498 0.94340 1.17875 0.82537 0.85699 0.99727 1.44500 1.74054 1.10428 1.01611 1.19568 1.23848 1.09301 0.85921 0.89965 1.25535 0.97211 1.00907 1.00435 1.70247 1.24140 1.39888 1.21697 0.85391 0.78072 0.77363 0.80647 1.18827 1.23440 1.22223 1.20110 0.91390 0.97146 0.85664 1.21979 1.01913 0.94837 0.98582 1.21480 0.96016 0.94757 0.93782 1.21173 0.93636 1.02174 1.03905 1.19647 0.85708 0.89286 0.94442 1.86114 1.24592 1.37358 1.73473 1.23632 0.86302 0.92388 1.02508 1.20051 0.85369 0.78324 0.74610 1.93211 1.92059 1.59160 1.71657 1.93227 1.68365 1.71302 1.81958 1.93218 1.86455 1.88137 1.48706 1.67130 1.24420 1.09995 1.25227 1.22236 0.86725 0.99271 0.92919 0.78179 0.91268 0.91060 0.94720 0.90783 0.90097 0.83495 0.83042 0.85718 0.86859 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -13.42 19.08 74.32 1.42 -12.01 16 2 C -0.11 -4.85 10.26 31.13 0.32 -4.53 16 3 C 0.27 11.40 5.45 84.57 0.46 11.86 16 4 N -0.59 -24.95 2.49 -716.90 -1.78 -26.73 16 5 C -0.26 -12.31 9.68 84.04 0.81 -11.50 16 6 H 0.08 3.79 7.88 -2.91 -0.02 3.76 16 7 C -0.04 -2.29 4.94 84.86 0.42 -1.87 16 8 N -0.91 -50.16 9.28 21.65 0.20 -49.96 16 9 Si 0.96 42.43 29.59 68.60 2.03 44.46 16 10 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 11 H -0.31 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 13 C 0.18 6.05 5.85 85.63 0.50 6.55 16 14 C -0.17 -5.63 5.24 -19.77 -0.10 -5.73 16 15 C -0.03 -1.10 9.85 22.45 0.22 -0.88 16 16 C -0.19 -5.87 10.04 22.47 0.23 -5.64 16 17 C 0.29 9.22 7.49 84.79 0.63 9.86 16 18 O -0.31 -8.87 10.00 -89.97 -0.90 -9.77 16 19 C 0.03 0.66 5.27 71.98 0.38 1.04 16 20 C 0.47 10.21 3.32 71.98 0.24 10.45 16 21 F -0.18 -4.12 17.26 44.97 0.78 -3.34 16 22 F -0.17 -3.35 17.32 44.97 0.78 -2.57 16 23 F -0.18 -4.56 17.26 44.97 0.78 -3.78 16 24 N -0.54 -17.74 9.22 -308.95 -2.85 -20.59 16 25 C 0.14 4.73 9.68 84.63 0.82 5.54 16 26 H 0.20 7.76 7.80 -4.43 -0.03 7.73 16 27 H 0.07 3.38 6.44 -2.39 -0.02 3.36 16 28 H 0.07 2.50 7.97 -2.38 -0.02 2.49 16 29 H 0.24 13.44 8.31 -92.72 -0.77 12.67 16 30 H 0.07 2.27 7.98 -2.39 -0.02 2.25 16 31 H 0.08 2.24 7.89 -2.39 -0.02 2.22 16 32 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.12 2.44 8.10 -2.39 -0.02 2.42 16 35 H 0.11 2.54 8.10 -2.38 -0.02 2.52 16 36 H 0.16 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -59.47 334.53 6.49 -52.98 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.11 Total: 16.16 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.35 Total: 3.15 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -4.43 Total: -97.28 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.90 Total: -9.77 kcal Atomic # 9 Polarization: -12.03 SS G_CDS: 2.33 Total: -9.70 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -59.47 6.49 -52.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491802674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.177 kcal (2) G-P(sol) polarization free energy of solvation -59.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds