Wall clock time and date at job start Tue Mar 31 2020 10:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47128 * 2 1 4 4 H 1.08997 * 109.46905 * 186.04605 * 3 2 1 5 5 C 1.50701 * 109.47007 * 306.03725 * 3 2 1 6 6 H 1.08003 * 119.99668 * 118.24413 * 5 3 2 7 7 C 1.37872 * 120.00436 * 298.24864 * 5 3 2 8 8 N 1.31513 * 120.00062 * 349.33986 * 7 5 3 9 9 Si 1.86805 * 120.00107 * 169.34800 * 7 5 3 10 10 H 1.48497 * 109.46880 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.46820 * 299.99588 * 9 7 5 12 12 H 1.48499 * 109.47005 * 59.99417 * 9 7 5 13 13 N 1.46892 * 109.47251 * 66.04101 * 3 2 1 14 14 C 1.46905 * 110.99839 * 86.97468 * 13 3 2 15 15 C 1.50700 * 109.47310 * 184.16858 * 14 13 3 16 16 O 1.21296 * 119.99645 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00470 * 180.02562 * 15 14 13 18 18 C 1.40081 * 120.00272 * 185.38215 * 17 15 14 19 19 C 1.38829 * 120.04726 * 26.85737 * 18 17 15 20 20 C 1.38126 * 119.96570 * 179.74617 * 19 18 17 21 21 C 1.38489 * 120.06344 * 0.55469 * 20 19 18 22 22 F 1.35098 * 119.94856 * 179.72647 * 21 20 19 23 23 C 1.38446 * 120.10117 * 359.69213 * 21 20 19 24 24 C 1.38233 * 120.03238 * 0.03408 * 23 21 20 25 25 Cl 1.73599 * 120.03315 * 179.97438 * 24 23 21 26 26 H 1.09000 * 109.47193 * 183.19484 * 1 2 3 27 27 H 1.08999 * 109.47350 * 303.19171 * 1 2 3 28 28 H 1.09006 * 109.47239 * 63.19179 * 1 2 3 29 29 H 1.09002 * 109.46762 * 239.99707 * 2 1 3 30 30 H 1.09007 * 109.46911 * 120.00208 * 2 1 3 31 31 H 0.97002 * 119.99908 * 357.43956 * 8 7 5 32 32 H 1.00896 * 111.00383 * 323.02227 * 13 3 2 33 33 H 1.08991 * 109.47383 * 304.17456 * 14 13 3 34 34 H 1.09001 * 109.46752 * 64.17211 * 14 13 3 35 35 H 0.96998 * 119.99212 * 5.37971 * 17 15 14 36 36 H 1.08003 * 120.01836 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.96575 * 180.24787 * 20 19 18 38 38 H 1.08004 * 119.98783 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1246 1.4443 -0.1082 5 6 1.4194 2.1947 -1.1489 6 1 0.7897 3.0508 -0.9565 7 6 1.6552 1.7899 -2.4456 8 7 2.5792 0.8880 -2.6952 9 14 0.6624 2.5228 -3.8481 10 1 1.1060 1.9257 -5.1333 11 1 -0.7789 2.2332 -3.6384 12 1 0.8714 3.9925 -3.8873 13 7 1.6730 2.0916 1.2656 14 6 2.6895 1.8460 2.2973 15 6 2.2313 2.4383 3.6051 16 8 1.1628 3.0085 3.6712 17 7 3.0086 2.3344 4.7012 18 6 2.5355 2.7841 5.9406 19 6 1.1713 2.8092 6.1964 20 6 0.7069 3.2480 7.4210 21 6 1.6003 3.6737 8.3898 22 9 1.1432 4.1076 9.5847 23 6 2.9611 3.6546 8.1358 24 6 3.4306 3.2110 6.9137 25 17 5.1370 3.1877 6.5949 26 1 -0.3633 -1.0261 0.0573 27 1 -0.3634 0.5626 0.8600 28 1 -0.3634 0.4635 -0.9173 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.1202 0.5348 -1.9717 32 1 0.7620 1.7891 1.5763 33 1 2.8349 0.7723 2.4158 34 1 3.6299 2.3091 1.9984 35 1 3.8957 1.9483 4.6316 36 1 0.4735 2.4824 5.4395 37 1 -0.3542 3.2638 7.6214 38 1 3.6562 3.9867 8.8928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566428658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:15 Heat of formation + Delta-G solvation = -60.190522 kcal Electronic energy + Delta-G solvation = -23173.841691 eV Core-core repulsion = 19377.615806 eV Total energy + Delta-G solvation = -3796.225886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.19113 -40.79642 -38.76091 -36.89014 -36.64268 -34.88362 -32.85509 -31.34723 -30.89749 -29.62154 -27.01583 -24.81058 -23.78814 -23.57398 -22.65540 -20.61447 -19.65670 -18.50310 -17.88400 -17.52940 -16.76324 -16.16659 -15.88722 -15.67316 -15.26249 -14.81986 -14.17912 -14.10524 -13.89383 -13.88067 -13.68449 -13.41684 -13.21030 -13.19082 -12.42115 -12.11884 -11.94295 -11.76028 -11.66916 -11.48001 -11.16410 -10.77301 -10.65080 -10.35123 -10.15838 -10.08340 -9.91936 -9.85418 -9.33099 -8.75301 -8.33423 -8.25833 -7.46760 -6.34502 -4.01718 0.57338 0.72701 1.59982 2.46044 2.70987 3.18010 3.46719 3.46873 3.65896 3.93576 4.26904 4.47584 4.52997 4.67097 4.79750 5.01069 5.07758 5.26412 5.34675 5.54269 5.55284 5.61178 5.69021 5.85715 6.04447 6.04878 6.08621 6.26310 6.47224 6.61738 6.83737 6.92066 7.09024 7.17989 7.27084 7.78624 7.97281 8.18872 8.32475 8.63242 8.88556 9.64700 11.01622 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.002743 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.865460 B =10205.463929 C =10743.834602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.152 4.152 3 C 0.206 3.794 4 H 0.025 0.975 5 C -0.573 4.573 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 1.063 2.937 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.660 5.660 14 C 0.042 3.958 15 C 0.516 3.484 16 O -0.498 6.498 17 N -0.676 5.676 18 C 0.165 3.835 19 C -0.092 4.092 20 C -0.123 4.123 21 C 0.085 3.915 22 F -0.135 7.135 23 C -0.124 4.124 24 C -0.049 4.049 25 Cl -0.052 7.052 26 H 0.026 0.974 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.339 0.661 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.414 0.586 36 H 0.164 0.836 37 H 0.146 0.854 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 0.896 21.497 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.192 4.192 3 C 0.098 3.902 4 H 0.043 0.957 5 C -0.611 4.611 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.293 5.293 14 C -0.091 4.091 15 C 0.305 3.695 16 O -0.370 6.370 17 N -0.322 5.322 18 C 0.067 3.933 19 C -0.112 4.112 20 C -0.142 4.142 21 C 0.065 3.935 22 F -0.114 7.114 23 C -0.144 4.144 24 C -0.079 4.079 25 Cl -0.023 7.023 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.251 0.749 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.706 1.839 19.603 19.763 hybrid contribution 0.780 -0.979 2.160 2.496 sum 2.486 0.860 21.763 21.922 Atomic orbital electron populations 1.21559 0.96487 0.98357 1.02232 1.22226 0.96495 1.00935 0.99514 1.19374 0.95669 0.88695 0.86504 0.95715 1.21797 1.32878 1.15524 0.90940 0.92379 1.25701 0.97102 0.96021 0.99472 1.70833 1.19167 1.28960 1.36043 0.83619 0.75659 0.75754 0.75777 1.21008 1.21424 1.21468 1.60642 1.03285 1.63243 1.02169 1.21883 0.99491 0.98562 0.89155 1.21353 0.84382 0.78768 0.85019 1.90673 1.22273 1.39584 1.84503 1.43821 1.20677 1.61948 1.05733 1.17588 0.92447 0.97667 0.85567 1.21272 0.93761 0.99218 0.96998 1.21210 1.00685 0.99857 0.92450 1.17395 0.91693 1.02019 0.82405 1.91516 1.89327 1.87451 1.43106 1.20738 0.94545 1.02363 0.96756 1.20339 0.85314 1.06403 0.95835 1.98386 1.11310 1.97128 1.95515 0.95448 0.94445 0.91072 0.91117 0.96236 0.92156 0.84030 0.92757 0.88208 0.74869 0.81897 0.83652 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.38 37.16 0.35 -2.27 16 2 C -0.15 -3.28 5.44 -26.73 -0.15 -3.42 16 3 C 0.21 4.79 1.97 -68.87 -0.14 4.65 16 4 H 0.03 0.62 7.23 -51.93 -0.38 0.24 16 5 C -0.57 -15.33 7.32 -34.44 -0.25 -15.58 16 6 H 0.06 1.63 7.84 -52.48 -0.41 1.22 16 7 C 0.02 0.56 5.17 -17.82 -0.09 0.47 16 8 N -0.91 -26.08 12.90 55.43 0.72 -25.36 16 9 Si 1.06 24.66 29.92 -169.99 -5.09 19.58 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.66 -13.51 5.94 -109.23 -0.65 -14.16 16 14 C 0.04 0.66 5.96 -4.97 -0.03 0.63 16 15 C 0.52 7.57 7.65 -10.99 -0.08 7.49 16 16 O -0.50 -8.78 13.39 5.54 0.07 -8.71 16 17 N -0.68 -7.73 5.17 -9.82 -0.05 -7.78 16 18 C 0.16 1.89 6.40 -83.61 -0.53 1.35 16 19 C -0.09 -1.06 8.70 -39.40 -0.34 -1.41 16 20 C -0.12 -1.21 10.02 -39.53 -0.40 -1.61 16 21 C 0.09 0.84 7.30 -39.41 -0.29 0.56 16 22 F -0.14 -1.38 17.26 2.25 0.04 -1.34 16 23 C -0.12 -1.15 9.80 -39.51 -0.39 -1.54 16 24 C -0.05 -0.50 6.34 -39.33 -0.25 -0.75 16 25 Cl -0.05 -0.48 27.82 -51.86 -1.44 -1.92 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.71 6.37 -51.93 -0.33 0.38 16 28 H 0.07 1.61 7.16 -51.93 -0.37 1.24 16 29 H 0.07 1.69 6.30 -51.93 -0.33 1.36 16 30 H 0.02 0.37 7.44 -51.92 -0.39 -0.02 16 31 H 0.27 7.52 6.09 -40.82 -0.25 7.28 16 32 H 0.34 6.91 6.09 -39.29 -0.24 6.67 16 33 H 0.05 0.77 7.42 -51.93 -0.39 0.38 16 34 H 0.10 1.50 8.13 -51.93 -0.42 1.07 16 35 H 0.41 3.78 7.83 -40.82 -0.32 3.46 16 36 H 0.16 2.08 5.93 -52.48 -0.31 1.77 16 37 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -29.78 333.24 -8.16 -37.94 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.19 Total: 8.15 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.59 Total: -11.42 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.02 Total: -47.30 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.09 Total: 19.58 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.44 Total: -1.92 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.78 -8.16 -37.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.251 kcal (2) G-P(sol) polarization free energy of solvation -29.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds