Wall clock time and date at job start Tue Mar 31 2020 10:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46754 * 2 1 4 4 H 1.08996 * 109.47321 * 56.10217 * 3 2 1 5 5 C 1.50696 * 109.46584 * 176.10159 * 3 2 1 6 6 H 1.08009 * 120.00138 * 120.00111 * 5 3 2 7 7 C 1.37877 * 120.00436 * 299.99379 * 5 3 2 8 8 N 1.31515 * 120.00324 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99639 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47287 * 89.99546 * 9 7 5 11 11 H 1.48507 * 109.47229 * 209.99537 * 9 7 5 12 12 H 1.48496 * 109.47193 * 329.99835 * 9 7 5 13 13 N 1.46901 * 109.47116 * 296.09854 * 3 2 1 14 14 C 1.46901 * 110.99937 * 151.44522 * 13 3 2 15 15 C 1.50700 * 109.47084 * 185.14437 * 14 13 3 16 16 O 1.21292 * 119.99918 * 359.97438 * 15 14 13 17 17 N 1.34767 * 120.00285 * 180.02562 * 15 14 13 18 18 C 1.40027 * 120.00792 * 175.10376 * 17 15 14 19 19 C 1.38875 * 120.03425 * 35.38820 * 18 17 15 20 20 C 1.38109 * 119.97765 * 179.97438 * 19 18 17 21 21 C 1.38463 * 120.06001 * 0.02562 * 20 19 18 22 22 F 1.35090 * 119.96235 * 179.97438 * 21 20 19 23 23 C 1.38570 * 120.07496 * 0.02562 * 21 20 19 24 24 Cl 1.73604 * 119.98650 * 179.97438 * 23 21 20 25 25 C 1.38237 * 120.02368 * 359.70761 * 23 21 20 26 26 H 1.09005 * 109.47151 * 305.03830 * 1 2 3 27 27 H 1.08998 * 109.47408 * 65.04150 * 1 2 3 28 28 H 1.09002 * 109.47030 * 185.04267 * 1 2 3 29 29 H 1.08997 * 109.47029 * 239.99652 * 2 1 3 30 30 H 1.09000 * 109.46587 * 119.99627 * 2 1 3 31 31 H 0.97003 * 120.00245 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99969 * 275.39723 * 13 3 2 33 33 H 1.09003 * 109.46618 * 305.14166 * 14 13 3 34 34 H 1.08998 * 109.47223 * 65.14558 * 14 13 3 35 35 H 0.97010 * 119.99962 * 355.10456 * 17 15 14 36 36 H 1.08003 * 120.01389 * 0.02562 * 19 18 17 37 37 H 1.08004 * 119.97278 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.03216 * 180.29860 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6207 1.9761 0.8530 5 6 3.5438 1.4436 0.0966 6 1 4.1350 1.8932 -0.6875 7 6 4.1651 0.8708 1.1860 8 7 5.4776 0.8712 1.2701 9 14 3.1427 0.0927 2.5420 10 1 2.9161 -1.3414 2.2302 11 1 3.8636 0.2103 3.8350 12 1 1.8355 0.7906 2.6387 13 7 1.6287 2.1073 -1.2438 14 6 1.4713 3.5536 -1.0405 15 6 0.9290 4.1816 -2.2985 16 8 0.6970 3.4922 -3.2691 17 7 0.7029 5.5093 -2.3455 18 6 0.2970 6.1086 -3.5442 19 6 -0.5448 5.4258 -4.4125 20 6 -0.9448 6.0182 -5.5942 21 6 -0.5069 7.2921 -5.9144 22 9 -0.8990 7.8695 -7.0711 23 6 0.3339 7.9751 -5.0503 24 17 0.8820 9.5720 -5.4544 25 6 0.7319 7.3875 -3.8640 26 1 -0.3634 0.5900 0.8415 27 1 -0.3634 0.4336 -0.9317 28 1 -0.3633 -1.0237 0.0903 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9147 0.4686 2.0367 32 1 2.2814 1.9158 -1.9890 33 1 0.7787 3.7316 -0.2179 34 1 2.4393 3.9945 -0.8025 35 1 0.8213 6.0500 -1.5488 36 1 -0.8871 4.4322 -4.1634 37 1 -1.5991 5.4870 -6.2696 38 1 1.3833 7.9216 -3.1881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568528348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:29 Heat of formation + Delta-G solvation = -54.380539 kcal Electronic energy + Delta-G solvation = -22988.780373 eV Core-core repulsion = 19192.806427 eV Total energy + Delta-G solvation = -3795.973946 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.14831 -40.64669 -38.66536 -36.89516 -36.33415 -34.71310 -32.57159 -31.78683 -31.28686 -29.66087 -27.62765 -25.39669 -23.66063 -22.85339 -22.29701 -20.51441 -19.99438 -18.37133 -17.74733 -17.32015 -17.02911 -16.39314 -15.94786 -15.52468 -15.27361 -14.76588 -14.50664 -14.24194 -13.93225 -13.78959 -13.49665 -13.18385 -13.09024 -12.91932 -12.59910 -12.31033 -12.02661 -11.76243 -11.70716 -11.57433 -11.28888 -11.09382 -10.72178 -10.50876 -10.35816 -9.91421 -9.69974 -9.53362 -9.31215 -9.25876 -8.67587 -8.34893 -7.54401 -6.22232 -4.24911 0.66562 0.73100 1.64790 2.56912 2.84744 3.19831 3.22740 3.29601 3.31582 3.82722 4.28161 4.34050 4.70462 4.75672 4.79326 5.06663 5.16404 5.18820 5.25504 5.53678 5.61004 5.84679 5.87423 5.90694 6.00559 6.01194 6.06393 6.22229 6.55537 6.58781 6.66807 6.89409 6.98093 7.15569 7.22004 7.43246 7.82036 8.09535 8.23385 8.35586 8.78904 9.40125 10.90375 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.026209 B = 0.002592 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.065364 B =10799.401209 C =11501.303328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.186 3.814 4 H 0.033 0.967 5 C -0.552 4.552 6 H 0.073 0.927 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.664 5.664 14 C 0.049 3.951 15 C 0.516 3.484 16 O -0.503 6.503 17 N -0.680 5.680 18 C 0.161 3.839 19 C -0.089 4.089 20 C -0.121 4.121 21 C 0.086 3.914 22 F -0.130 7.130 23 C -0.054 4.054 24 Cl -0.050 7.050 25 C -0.116 4.116 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.346 0.654 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.414 0.586 36 H 0.158 0.842 37 H 0.148 0.852 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.677 14.124 -8.645 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.077 3.923 4 H 0.051 0.949 5 C -0.591 4.591 6 H 0.091 0.909 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.296 5.296 14 C -0.084 4.084 15 C 0.304 3.696 16 O -0.375 6.375 17 N -0.327 5.327 18 C 0.065 3.935 19 C -0.110 4.110 20 C -0.141 4.141 21 C 0.065 3.935 22 F -0.108 7.108 23 C -0.083 4.083 24 Cl -0.021 7.021 25 C -0.137 4.137 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.164 0.836 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.251 0.749 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.273 13.513 -9.166 21.043 hybrid contribution 0.770 0.379 1.048 1.355 sum -12.503 13.892 -8.118 20.377 Atomic orbital electron populations 1.21725 0.97456 0.99259 1.01556 1.21809 0.93941 0.99032 1.00551 1.19615 0.94310 0.90826 0.87526 0.94923 1.21718 0.90218 1.39440 1.07718 0.90864 1.25005 0.94766 0.95141 0.97965 1.69911 1.08313 1.44515 1.30454 0.86803 0.80298 0.80088 0.80729 1.20346 1.22575 1.18927 1.60502 1.54731 1.04585 1.09733 1.21700 1.00998 0.92603 0.93073 1.21454 0.76529 0.80434 0.91161 1.90675 1.48789 1.61008 1.37027 1.43732 1.68554 1.09590 1.10866 1.17633 0.94967 0.92070 0.88797 1.21381 0.94883 1.01557 0.93157 1.21074 1.01672 0.92820 0.98504 1.17375 0.99452 0.92787 0.83856 1.91523 1.89270 1.84246 1.45810 1.20627 1.01788 0.89185 0.96669 1.98390 1.88565 1.21598 1.93587 1.20674 1.01519 0.95493 0.96031 0.94232 0.91884 0.94819 0.92156 0.93659 0.92489 0.83581 0.88517 0.91278 0.74925 0.82442 0.83422 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.73 37.16 0.36 -2.16 16 2 C -0.12 -2.41 5.12 -26.73 -0.14 -2.55 16 3 C 0.19 4.02 1.59 -68.87 -0.11 3.91 16 4 H 0.03 0.72 6.72 -51.93 -0.35 0.37 16 5 C -0.55 -14.36 9.12 -34.44 -0.31 -14.68 16 6 H 0.07 2.08 7.93 -52.48 -0.42 1.66 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 9 Si 0.89 20.95 24.40 -169.99 -4.15 16.80 16 10 H -0.28 -6.43 6.84 56.52 0.39 -6.05 16 11 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.26 -5.88 6.53 56.52 0.37 -5.51 16 13 N -0.66 -12.50 5.29 -109.22 -0.58 -13.08 16 14 C 0.05 0.74 6.02 -4.98 -0.03 0.71 16 15 C 0.52 7.14 7.73 -10.99 -0.08 7.05 16 16 O -0.50 -8.51 13.76 5.55 0.08 -8.43 16 17 N -0.68 -6.96 5.34 -9.85 -0.05 -7.02 16 18 C 0.16 1.72 6.30 -83.66 -0.53 1.20 16 19 C -0.09 -1.00 8.69 -39.39 -0.34 -1.34 16 20 C -0.12 -1.21 10.02 -39.55 -0.40 -1.61 16 21 C 0.09 0.93 7.27 -39.38 -0.29 0.64 16 22 F -0.13 -1.47 16.83 2.25 0.04 -1.43 16 23 C -0.05 -0.56 6.32 -39.46 -0.25 -0.81 16 24 Cl -0.05 -0.50 28.61 -51.86 -1.48 -1.98 16 25 C -0.12 -1.10 9.75 -39.37 -0.38 -1.48 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.10 7.86 -51.93 -0.41 0.69 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.05 1.01 3.22 -51.93 -0.17 0.84 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.35 6.96 8.22 -39.29 -0.32 6.64 16 33 H 0.10 1.28 7.92 -51.93 -0.41 0.87 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.41 2.90 8.82 -40.82 -0.36 2.54 16 36 H 0.16 1.95 6.24 -52.48 -0.33 1.62 16 37 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -30.07 335.70 -7.39 -37.47 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.48 Total: 7.24 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.60 Total: -9.19 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.14 Total: -45.54 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.15 Total: 16.80 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.07 -7.39 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568528348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.912 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds