Wall clock time and date at job start Tue Mar 31 2020 10:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46754 * 2 1 4 4 H 1.08996 * 109.47321 * 56.10217 * 3 2 1 5 5 C 1.50696 * 109.46584 * 176.10159 * 3 2 1 6 6 H 1.08009 * 120.00138 * 120.00111 * 5 3 2 7 7 C 1.37877 * 120.00436 * 299.99379 * 5 3 2 8 8 N 1.31515 * 120.00324 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99639 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47287 * 89.99546 * 9 7 5 11 11 H 1.48507 * 109.47229 * 209.99537 * 9 7 5 12 12 H 1.48496 * 109.47193 * 329.99835 * 9 7 5 13 13 N 1.46901 * 109.47116 * 296.09854 * 3 2 1 14 14 C 1.46901 * 110.99937 * 151.44522 * 13 3 2 15 15 C 1.50700 * 109.47084 * 185.14437 * 14 13 3 16 16 O 1.21292 * 119.99918 * 359.97438 * 15 14 13 17 17 N 1.34767 * 120.00285 * 180.02562 * 15 14 13 18 18 C 1.40027 * 120.00792 * 175.10376 * 17 15 14 19 19 C 1.38875 * 120.03425 * 35.38820 * 18 17 15 20 20 C 1.38109 * 119.97765 * 179.97438 * 19 18 17 21 21 C 1.38463 * 120.06001 * 0.02562 * 20 19 18 22 22 F 1.35090 * 119.96235 * 179.97438 * 21 20 19 23 23 C 1.38570 * 120.07496 * 0.02562 * 21 20 19 24 24 Cl 1.73604 * 119.98650 * 179.97438 * 23 21 20 25 25 C 1.38237 * 120.02368 * 359.70761 * 23 21 20 26 26 H 1.09005 * 109.47151 * 305.03830 * 1 2 3 27 27 H 1.08998 * 109.47408 * 65.04150 * 1 2 3 28 28 H 1.09002 * 109.47030 * 185.04267 * 1 2 3 29 29 H 1.08997 * 109.47029 * 239.99652 * 2 1 3 30 30 H 1.09000 * 109.46587 * 119.99627 * 2 1 3 31 31 H 0.97003 * 120.00245 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99969 * 275.39723 * 13 3 2 33 33 H 1.09003 * 109.46618 * 305.14166 * 14 13 3 34 34 H 1.08998 * 109.47223 * 65.14558 * 14 13 3 35 35 H 0.97010 * 119.99962 * 355.10456 * 17 15 14 36 36 H 1.08003 * 120.01389 * 0.02562 * 19 18 17 37 37 H 1.08004 * 119.97278 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.03216 * 180.29860 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6207 1.9761 0.8530 5 6 3.5438 1.4436 0.0966 6 1 4.1350 1.8932 -0.6875 7 6 4.1651 0.8708 1.1860 8 7 5.4776 0.8712 1.2701 9 14 3.1427 0.0927 2.5420 10 1 2.9161 -1.3414 2.2302 11 1 3.8636 0.2103 3.8350 12 1 1.8355 0.7906 2.6387 13 7 1.6287 2.1073 -1.2438 14 6 1.4713 3.5536 -1.0405 15 6 0.9290 4.1816 -2.2985 16 8 0.6970 3.4922 -3.2691 17 7 0.7029 5.5093 -2.3455 18 6 0.2970 6.1086 -3.5442 19 6 -0.5448 5.4258 -4.4125 20 6 -0.9448 6.0182 -5.5942 21 6 -0.5069 7.2921 -5.9144 22 9 -0.8990 7.8695 -7.0711 23 6 0.3339 7.9751 -5.0503 24 17 0.8820 9.5720 -5.4544 25 6 0.7319 7.3875 -3.8640 26 1 -0.3634 0.5900 0.8415 27 1 -0.3634 0.4336 -0.9317 28 1 -0.3633 -1.0237 0.0903 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9147 0.4686 2.0367 32 1 2.2814 1.9158 -1.9890 33 1 0.7787 3.7316 -0.2179 34 1 2.4393 3.9945 -0.8025 35 1 0.8213 6.0500 -1.5488 36 1 -0.8871 4.4322 -4.1634 37 1 -1.5991 5.4870 -6.2696 38 1 1.3833 7.9216 -3.1881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568528348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:27 Heat of formation + Delta-G solvation = -74.439658 kcal Electronic energy + Delta-G solvation = -22989.650202 eV Core-core repulsion = 19192.806427 eV Total energy + Delta-G solvation = -3796.843774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -50.00389 -41.62404 -39.64584 -38.03057 -37.60195 -35.69321 -34.41607 -33.39229 -32.09140 -30.66027 -29.20329 -26.85088 -24.51052 -24.25441 -23.47984 -21.69035 -21.52355 -19.34696 -19.02866 -18.57247 -18.24075 -17.33574 -17.09124 -16.79916 -16.58696 -15.93173 -15.71735 -15.43000 -15.00213 -14.95813 -14.67050 -14.59706 -14.13077 -14.09970 -13.99733 -13.71790 -13.36717 -13.13436 -12.94667 -12.75083 -12.57398 -12.39954 -12.14895 -12.06904 -11.62168 -11.29860 -11.28627 -11.16731 -10.90124 -10.65711 -10.06732 -9.23081 -9.10818 -8.31653 -6.37775 -0.19115 -0.05864 0.84320 1.35147 1.38232 1.49158 1.50650 1.88843 2.32015 2.39180 3.01756 3.04410 3.51815 3.59198 3.79452 3.93716 4.02133 4.28381 4.35065 4.48387 4.52811 4.53066 4.61379 4.73214 4.74972 4.95278 5.02906 5.05975 5.17228 5.20497 5.30113 5.46574 5.48883 5.65588 5.68999 6.02322 6.30661 6.38411 6.58770 6.75270 7.09958 7.31566 8.84333 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.026209 B = 0.002592 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.065364 B =10799.401209 C =11501.303328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.119 4.119 3 C 0.193 3.807 4 H 0.041 0.959 5 C -0.548 4.548 6 H 0.034 0.966 7 C 0.017 3.983 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.302 1.302 12 H -0.237 1.237 13 N -0.663 5.663 14 C 0.047 3.953 15 C 0.523 3.477 16 O -0.537 6.537 17 N -0.661 5.661 18 C 0.150 3.850 19 C -0.099 4.099 20 C -0.117 4.117 21 C 0.078 3.922 22 F -0.134 7.134 23 C -0.061 4.061 24 Cl -0.046 7.046 25 C -0.105 4.105 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.335 0.665 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.431 0.569 36 H 0.146 0.854 37 H 0.166 0.834 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.792 14.877 -7.958 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.084 3.916 4 H 0.059 0.941 5 C -0.587 4.587 6 H 0.053 0.947 7 C -0.181 4.181 8 N -0.586 5.586 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.231 1.231 12 H -0.161 1.161 13 N -0.292 5.292 14 C -0.085 4.085 15 C 0.312 3.688 16 O -0.412 6.412 17 N -0.309 5.309 18 C 0.055 3.945 19 C -0.119 4.119 20 C -0.137 4.137 21 C 0.057 3.943 22 F -0.113 7.113 23 C -0.089 4.089 24 Cl -0.017 7.017 25 C -0.126 4.126 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.271 0.729 36 H 0.164 0.836 37 H 0.183 0.817 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.424 14.323 -8.478 22.692 hybrid contribution 1.466 0.253 0.713 1.650 sum -13.958 14.576 -7.765 21.623 Atomic orbital electron populations 1.21623 0.94502 1.00799 1.02093 1.21779 0.96552 0.97852 0.99523 1.19480 0.91116 0.92059 0.88985 0.94103 1.22053 0.92677 1.37796 1.06134 0.94740 1.25854 0.95647 0.95960 1.00674 1.70063 1.10386 1.46588 1.31585 0.85836 0.79718 0.79527 0.77238 1.19859 1.23058 1.16062 1.60482 1.53663 1.07005 1.08046 1.21792 1.01601 0.90439 0.94717 1.21103 0.76241 0.81360 0.90099 1.90675 1.50516 1.62146 1.37882 1.43414 1.67397 1.08480 1.11645 1.17713 0.95413 0.92565 0.88837 1.21355 0.95519 1.01236 0.93827 1.21211 1.01508 0.92603 0.98330 1.17532 0.99786 0.93127 0.83872 1.91512 1.89366 1.84332 1.46092 1.20757 1.01791 0.89477 0.96909 1.98393 1.88487 1.21237 1.93588 1.20820 1.01005 0.94852 0.95922 0.93186 0.91739 0.92918 0.93296 0.94694 0.92581 0.84800 0.86046 0.91634 0.72892 0.83638 0.81669 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.73 71.98 0.70 -3.57 16 2 C -0.12 -4.76 5.12 30.60 0.16 -4.61 16 3 C 0.19 8.11 1.59 44.17 0.07 8.18 16 4 H 0.04 1.68 6.72 -2.39 -0.02 1.66 16 5 C -0.55 -28.86 9.12 25.60 0.23 -28.62 16 6 H 0.03 2.03 7.93 -2.91 -0.02 2.01 16 7 C 0.02 0.94 5.45 84.65 0.46 1.40 16 8 N -0.95 -56.94 13.96 21.45 0.30 -56.64 16 9 Si 0.95 42.52 24.40 68.60 1.67 44.19 16 10 H -0.27 -11.91 6.84 99.48 0.68 -11.23 16 11 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.24 -9.49 6.53 99.48 0.65 -8.84 16 13 N -0.66 -24.38 5.29 -499.47 -2.64 -27.02 16 14 C 0.05 1.34 6.02 85.56 0.51 1.86 16 15 C 0.52 13.80 7.73 87.66 0.68 14.47 16 16 O -0.54 -17.88 13.76 -3.07 -0.04 -17.92 16 17 N -0.66 -12.23 5.34 -303.47 -1.62 -13.85 16 18 C 0.15 2.95 6.30 38.12 0.24 3.19 16 19 C -0.10 -2.11 8.69 22.39 0.19 -1.92 16 20 C -0.12 -2.20 10.02 22.29 0.22 -1.98 16 21 C 0.08 1.57 7.27 22.40 0.16 1.73 16 22 F -0.13 -2.88 16.83 44.97 0.76 -2.12 16 23 C -0.06 -1.16 6.32 22.35 0.14 -1.02 16 24 Cl -0.05 -0.83 28.61 -2.72 -0.08 -0.91 16 25 C -0.11 -1.77 9.75 22.41 0.22 -1.55 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.06 2.06 7.86 -2.39 -0.02 2.04 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.03 1.47 3.22 -2.39 -0.01 1.46 16 31 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.34 13.65 8.22 -89.69 -0.74 12.91 16 33 H 0.12 2.86 7.92 -2.39 -0.02 2.84 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.43 4.89 8.82 -92.70 -0.82 4.07 16 36 H 0.15 3.52 6.24 -2.91 -0.02 3.50 16 37 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 38 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -65.56 335.70 1.82 -63.73 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -0.52 Total: 22.98 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 3.99 Total: -12.44 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -3.96 Total: -97.51 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.04 Total: -17.92 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.76 Total: -2.12 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.67 Total: 44.19 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -65.56 1.82 -63.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568528348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.705 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds