Wall clock time and date at job start Tue Mar 31 2020 10:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38355 * 127.15445 * 2 1 4 4 C 1.39783 * 126.56276 * 0.02562 * 3 2 1 5 5 H 1.07997 * 119.99755 * 0.30846 * 4 3 2 6 6 C 1.40080 * 120.00105 * 180.31259 * 4 3 2 7 7 N 1.30823 * 119.99488 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00114 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47073 * 59.99955 * 8 6 4 10 10 H 1.48505 * 109.46879 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46778 * 299.99547 * 8 6 4 12 12 N 1.33090 * 106.87389 * 180.29176 * 3 2 1 13 13 N 1.28524 * 109.74647 * 359.74106 * 12 3 2 14 14 C 1.32384 * 110.19860 * 359.97438 * 13 12 3 15 15 S 1.76199 * 126.25617 * 179.97438 * 14 13 12 16 16 C 1.81002 * 100.00182 * 0.02950 * 15 14 13 17 17 C 1.52998 * 109.47085 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.46615 * 180.02562 * 17 16 15 19 19 C 1.38364 * 119.84380 * 269.71459 * 18 17 16 20 20 C 1.37944 * 120.15243 * 179.76861 * 19 18 17 21 21 C 1.39635 * 119.84635 * 0.53327 * 20 19 18 22 22 C 1.43198 * 120.15414 * 179.70363 * 21 20 19 23 23 N 9.50327 * 137.91130 * 179.66005 * 13 1 2 24 24 C 1.39637 * 119.69543 * 359.72336 * 21 20 19 25 25 C 1.37945 * 119.84565 * 0.02562 * 24 21 20 26 26 H 1.08992 * 109.47156 * 270.16427 * 1 2 3 27 27 H 1.09000 * 109.46754 * 30.16176 * 1 2 3 28 28 H 1.08998 * 109.47269 * 150.15776 * 1 2 3 29 29 H 0.97000 * 119.99441 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46889 * 299.99975 * 16 15 14 31 31 H 1.09000 * 109.47231 * 59.99947 * 16 15 14 32 32 H 1.09001 * 109.47131 * 299.99123 * 17 16 15 33 33 H 1.08996 * 109.47558 * 60.00200 * 17 16 15 34 34 H 1.08001 * 119.92748 * 0.02562 * 19 18 17 35 35 H 1.08001 * 120.07963 * 180.26017 * 20 19 18 36 36 H 1.08002 * 120.07722 * 179.97438 * 24 21 20 37 37 H 1.08007 * 119.92316 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4445 0.0005 5 1 0.8595 2.7005 0.0060 6 6 2.8767 3.4569 -0.0062 7 7 4.1476 3.1466 -0.0124 8 14 2.3530 5.2500 -0.0062 9 1 1.5487 5.5307 1.2100 10 1 3.5582 6.1176 -0.0133 11 1 1.5360 5.5269 -1.2150 12 7 3.5490 0.6414 -0.0065 13 7 3.5370 -0.6438 -0.0049 14 6 2.2904 -1.0893 0.0032 15 16 1.7873 -2.7779 0.0075 16 6 3.4058 -3.5882 -0.0010 17 6 3.2161 -5.1063 0.0008 18 6 4.5638 -5.7809 -0.0057 19 6 5.1707 -6.0950 -1.2088 20 6 6.4064 -6.7082 -1.2222 21 6 7.0396 -7.0218 -0.0179 22 6 8.3195 -7.6640 -0.0241 23 7 9.3348 -8.1735 -0.0247 24 6 6.4189 -6.7067 1.1926 25 6 5.1855 -6.0889 1.1913 26 1 -0.3633 0.0029 1.0276 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3634 -0.8914 -0.5114 29 1 4.8180 3.8477 -0.0167 30 1 3.9556 -3.2921 -0.8945 31 1 3.9659 -3.2906 0.8855 32 1 2.6663 -5.4027 0.8940 33 1 2.6564 -5.4037 -0.8859 34 1 4.6779 -5.8560 -2.1396 35 1 6.8809 -6.9491 -2.1620 36 1 6.9030 -6.9469 2.1277 37 1 4.7041 -5.8449 2.1268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594894790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:04 Heat of formation + Delta-G solvation = 112.103897 kcal Electronic energy + Delta-G solvation = -21334.956068 eV Core-core repulsion = 18011.307111 eV Total energy + Delta-G solvation = -3323.648957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52935 -39.83966 -36.82526 -34.34075 -33.71452 -33.32427 -31.36871 -30.05378 -29.32149 -26.56052 -25.69422 -24.72869 -23.05996 -21.85516 -20.83475 -20.34412 -19.17871 -17.38390 -16.33981 -16.03536 -16.00336 -15.42785 -14.82517 -14.81017 -14.46912 -14.28123 -14.21508 -13.77020 -13.73759 -13.37248 -13.08508 -12.99828 -12.82815 -12.34702 -12.25701 -11.98527 -11.64636 -11.58610 -11.31374 -11.26687 -11.11685 -10.95557 -10.43255 -10.24034 -9.75191 -9.63351 -9.30319 -8.99815 -8.73119 -8.46086 -8.40901 -6.88420 -6.67262 -4.60328 0.47885 1.07299 1.99744 2.42321 2.69473 2.78667 2.90864 3.04460 3.06688 3.33639 3.60175 3.64307 3.84983 4.20826 4.39921 4.50971 4.59143 4.61652 4.97169 5.01825 5.07832 5.24364 5.29916 5.40508 5.52131 5.62904 5.64709 5.80562 5.85917 5.93910 6.01150 6.01450 6.16150 6.31267 6.53884 6.74139 6.86007 7.21670 7.23433 7.45733 7.86467 8.14713 8.67507 8.82951 10.25174 10.61083 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.002529 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.553308 B =11069.749128 C =12129.300899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.516 5.516 3 C 0.347 3.653 4 C -0.447 4.447 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.736 5.736 8 Si 0.921 3.079 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.265 1.265 12 N -0.334 5.334 13 N -0.284 5.284 14 C 0.046 3.954 15 S -0.060 6.060 16 C -0.086 4.086 17 C -0.072 4.072 18 C -0.040 4.040 19 C -0.114 4.114 20 C -0.067 4.067 21 C -0.039 4.039 22 C 0.258 3.742 23 N -0.425 5.425 24 C -0.067 4.067 25 C -0.114 4.114 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.280 0.720 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 -14.922 -0.061 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.102 3.898 4 C -0.487 4.487 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.360 5.360 8 Si 0.745 3.255 9 H -0.190 1.190 10 H -0.201 1.201 11 H -0.190 1.190 12 N -0.181 5.181 13 N -0.130 5.130 14 C -0.326 4.326 15 S 0.168 5.832 16 C -0.235 4.235 17 C -0.111 4.111 18 C -0.042 4.042 19 C -0.132 4.132 20 C -0.087 4.087 21 C -0.043 4.043 22 C -0.057 4.057 23 N -0.100 5.100 24 C -0.087 4.087 25 C -0.132 4.132 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.985 -16.143 -0.070 16.265 hybrid contribution -0.837 1.834 0.011 2.016 sum -2.822 -14.309 -0.059 14.585 Atomic orbital electron populations 1.21487 0.78540 1.02681 1.01610 1.46038 1.06075 1.05340 1.64393 1.21618 0.84769 0.88417 0.94963 1.18069 0.94668 0.86463 1.49509 0.89831 1.25802 0.94347 1.01307 0.93314 1.70003 1.00710 1.35139 1.30168 0.86175 0.78983 0.80626 0.79748 1.18956 1.20063 1.18956 1.75468 1.15269 0.97840 1.29543 1.74541 1.15157 1.07602 1.15729 1.25259 0.91524 0.92470 1.23309 1.84300 1.10921 0.92191 1.95777 1.23264 0.97808 0.95045 1.07391 1.20467 0.93573 0.92541 1.04506 1.20070 0.95961 0.95043 0.93175 1.21058 0.94959 0.98854 0.98326 1.21161 0.94631 0.96300 0.96652 1.16004 0.89101 1.03992 0.95186 1.25772 0.92888 0.93339 0.93678 1.81253 1.11417 1.09941 1.07394 1.21160 0.94745 0.96278 0.96564 1.21056 0.94899 0.98825 0.98408 0.92582 0.90392 0.91523 0.90893 0.88905 0.88888 0.89620 0.89618 0.84630 0.84983 0.84988 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.80 10.87 59.85 0.65 2.45 16 2 N -0.52 -12.19 3.26 -123.18 -0.40 -12.59 16 3 C 0.35 9.55 7.53 -154.81 -1.17 8.38 16 4 C -0.45 -11.66 9.04 -38.31 -0.35 -12.01 16 5 H 0.08 1.96 7.31 -52.49 -0.38 1.58 16 6 C 0.08 1.97 5.50 -17.29 -0.10 1.87 16 7 N -0.74 -20.04 11.94 55.56 0.66 -19.38 16 8 Si 0.92 18.26 29.56 -169.99 -5.03 13.23 16 9 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 10 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 11 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 12 N -0.33 -9.90 10.48 31.26 0.33 -9.58 16 13 N -0.28 -7.62 11.62 30.89 0.36 -7.26 16 14 C 0.05 1.07 8.09 -87.28 -0.71 0.36 16 15 S -0.06 -0.98 21.78 -107.50 -2.34 -3.32 16 16 C -0.09 -1.18 5.21 37.16 0.19 -0.99 16 17 C -0.07 -0.66 5.34 -27.88 -0.15 -0.81 16 18 C -0.04 -0.35 5.14 -104.53 -0.54 -0.88 16 19 C -0.11 -0.92 9.68 -39.64 -0.38 -1.31 16 20 C -0.07 -0.54 9.76 -39.17 -0.38 -0.92 16 21 C -0.04 -0.35 5.73 -106.93 -0.61 -0.96 16 22 C 0.26 2.74 15.33 -22.47 -0.34 2.40 16 23 N -0.42 -5.49 18.54 41.84 0.78 -4.71 16 24 C -0.07 -0.54 9.76 -39.17 -0.38 -0.92 16 25 C -0.11 -0.92 9.68 -39.65 -0.38 -1.31 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.30 7.54 -51.93 -0.39 0.90 16 28 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 29 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 30 H 0.09 1.40 8.14 -51.91 -0.42 0.98 16 31 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 32 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -33.79 348.95 -9.14 -42.94 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.12 Total: 0.04 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -4.64 Total: -4.63 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 1.72 Total: -53.51 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.34 Total: -3.32 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.79 -9.14 -42.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594894790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.039 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds