Wall clock time and date at job start Tue Mar 31 2020 10:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38355 * 127.15445 * 2 1 4 4 C 1.39783 * 126.56276 * 0.02562 * 3 2 1 5 5 H 1.07997 * 119.99755 * 0.30846 * 4 3 2 6 6 C 1.40080 * 120.00105 * 180.31259 * 4 3 2 7 7 N 1.30823 * 119.99488 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00114 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47073 * 59.99955 * 8 6 4 10 10 H 1.48505 * 109.46879 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46778 * 299.99547 * 8 6 4 12 12 N 1.33090 * 106.87389 * 180.29176 * 3 2 1 13 13 N 1.28524 * 109.74647 * 359.74106 * 12 3 2 14 14 C 1.32384 * 110.19860 * 359.97438 * 13 12 3 15 15 S 1.76199 * 126.25617 * 179.97438 * 14 13 12 16 16 C 1.81002 * 100.00182 * 0.02950 * 15 14 13 17 17 C 1.52998 * 109.47085 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.46615 * 180.02562 * 17 16 15 19 19 C 1.38364 * 119.84380 * 269.71459 * 18 17 16 20 20 C 1.37944 * 120.15243 * 179.76861 * 19 18 17 21 21 C 1.39635 * 119.84635 * 0.53327 * 20 19 18 22 22 C 1.43198 * 120.15414 * 179.70363 * 21 20 19 23 23 N 9.50327 * 137.91130 * 179.66005 * 13 1 2 24 24 C 1.39637 * 119.69543 * 359.72336 * 21 20 19 25 25 C 1.37945 * 119.84565 * 0.02562 * 24 21 20 26 26 H 1.08992 * 109.47156 * 270.16427 * 1 2 3 27 27 H 1.09000 * 109.46754 * 30.16176 * 1 2 3 28 28 H 1.08998 * 109.47269 * 150.15776 * 1 2 3 29 29 H 0.97000 * 119.99441 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46889 * 299.99975 * 16 15 14 31 31 H 1.09000 * 109.47231 * 59.99947 * 16 15 14 32 32 H 1.09001 * 109.47131 * 299.99123 * 17 16 15 33 33 H 1.08996 * 109.47558 * 60.00200 * 17 16 15 34 34 H 1.08001 * 119.92748 * 0.02562 * 19 18 17 35 35 H 1.08001 * 120.07963 * 180.26017 * 20 19 18 36 36 H 1.08002 * 120.07722 * 179.97438 * 24 21 20 37 37 H 1.08007 * 119.92316 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4445 0.0005 5 1 0.8595 2.7005 0.0060 6 6 2.8767 3.4569 -0.0062 7 7 4.1476 3.1466 -0.0124 8 14 2.3530 5.2500 -0.0062 9 1 1.5487 5.5307 1.2100 10 1 3.5582 6.1176 -0.0133 11 1 1.5360 5.5269 -1.2150 12 7 3.5490 0.6414 -0.0065 13 7 3.5370 -0.6438 -0.0049 14 6 2.2904 -1.0893 0.0032 15 16 1.7873 -2.7779 0.0075 16 6 3.4058 -3.5882 -0.0010 17 6 3.2161 -5.1063 0.0008 18 6 4.5638 -5.7809 -0.0057 19 6 5.1707 -6.0950 -1.2088 20 6 6.4064 -6.7082 -1.2222 21 6 7.0396 -7.0218 -0.0179 22 6 8.3195 -7.6640 -0.0241 23 7 9.3348 -8.1735 -0.0247 24 6 6.4189 -6.7067 1.1926 25 6 5.1855 -6.0889 1.1913 26 1 -0.3633 0.0029 1.0276 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3634 -0.8914 -0.5114 29 1 4.8180 3.8477 -0.0167 30 1 3.9556 -3.2921 -0.8945 31 1 3.9659 -3.2906 0.8855 32 1 2.6663 -5.4027 0.8940 33 1 2.6564 -5.4037 -0.8859 34 1 4.6779 -5.8560 -2.1396 35 1 6.8809 -6.9491 -2.1620 36 1 6.9030 -6.9469 2.1277 37 1 4.7041 -5.8449 2.1268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594894790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:02 Heat of formation + Delta-G solvation = 93.979138 kcal Electronic energy + Delta-G solvation = -21335.742016 eV Core-core repulsion = 18011.307111 eV Total energy + Delta-G solvation = -3324.434905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.41300 -40.50506 -37.70269 -35.60643 -35.27408 -34.97890 -31.98898 -31.32619 -30.82111 -28.24050 -27.42619 -25.70273 -23.68561 -22.89554 -22.68308 -21.96183 -19.87459 -19.22516 -17.80444 -17.24975 -16.85189 -16.80316 -16.49167 -16.06477 -15.49081 -15.22901 -15.20551 -15.08576 -14.83547 -14.35590 -14.01260 -13.94277 -13.85509 -13.83536 -13.72405 -13.15827 -12.92135 -12.79900 -12.73479 -12.36769 -12.33617 -11.99798 -11.82669 -11.71342 -11.52345 -11.39258 -10.53581 -10.31986 -10.23780 -9.91766 -9.71418 -8.52589 -8.47197 -6.55823 -0.23947 0.45866 0.54779 1.23281 1.35633 1.42694 1.57838 1.58275 1.64589 1.92416 2.19966 2.47878 2.54718 2.85900 2.91157 3.36416 3.86421 3.90281 4.01942 4.08980 4.13148 4.13624 4.44524 4.48825 4.51695 4.65445 4.68083 4.86158 4.87145 4.92312 4.99127 5.13629 5.16880 5.28985 5.34319 5.37581 5.59590 5.65054 5.91042 6.08230 6.24053 6.41252 6.77890 6.95391 8.42818 8.68253 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.002529 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.553308 B =11069.749128 C =12129.300899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.523 5.523 3 C 0.316 3.684 4 C -0.472 4.472 5 H 0.103 0.897 6 C 0.028 3.972 7 N -0.789 5.789 8 Si 1.006 2.994 9 H -0.254 1.254 10 H -0.273 1.273 11 H -0.253 1.253 12 N -0.391 5.391 13 N -0.332 5.332 14 C 0.055 3.945 15 S -0.005 6.005 16 C -0.084 4.084 17 C -0.060 4.060 18 C -0.047 4.047 19 C -0.117 4.117 20 C -0.067 4.067 21 C -0.051 4.051 22 C 0.281 3.719 23 N -0.471 5.471 24 C -0.067 4.067 25 C -0.117 4.117 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.284 0.716 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 -15.545 -0.063 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.225 5.225 3 C 0.069 3.931 4 C -0.512 4.512 5 H 0.121 0.879 6 C -0.192 4.192 7 N -0.414 5.414 8 Si 0.824 3.176 9 H -0.178 1.178 10 H -0.198 1.198 11 H -0.177 1.177 12 N -0.237 5.237 13 N -0.176 5.176 14 C -0.318 4.318 15 S 0.222 5.778 16 C -0.233 4.233 17 C -0.099 4.099 18 C -0.050 4.050 19 C -0.135 4.135 20 C -0.087 4.087 21 C -0.054 4.054 22 C -0.034 4.034 23 N -0.147 5.147 24 C -0.087 4.087 25 C -0.136 4.136 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.505 -16.783 -0.071 17.378 hybrid contribution -0.142 1.794 0.013 1.800 sum -4.646 -14.989 -0.058 15.693 Atomic orbital electron populations 1.21851 0.75261 1.04503 1.03325 1.46402 1.08127 1.04499 1.63423 1.22032 0.85178 0.89966 0.95921 1.18578 0.95915 0.86540 1.50185 0.87927 1.26980 0.93931 1.06445 0.91878 1.70160 1.02361 1.36988 1.31911 0.84920 0.78639 0.73641 0.80372 1.17764 1.19790 1.17712 1.75317 1.17363 0.99330 1.31695 1.74411 1.17297 1.06976 1.18900 1.26541 0.90959 0.95805 1.18529 1.84068 1.12068 0.86754 1.94886 1.23402 0.96053 0.97954 1.05921 1.20429 0.94435 0.88735 1.06297 1.20112 0.95840 0.95374 0.93691 1.21274 0.94931 0.98472 0.98866 1.21356 0.94607 0.95751 0.97006 1.16130 0.88538 1.04691 0.96073 1.26008 0.92750 0.92281 0.92321 1.81270 1.12823 1.11693 1.08884 1.21353 0.94732 0.95737 0.96905 1.21271 0.94865 0.98458 0.98960 0.90815 0.89499 0.88838 0.90613 0.90446 0.90444 0.87870 0.87849 0.83135 0.83522 0.83542 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.10 10.87 127.77 1.39 4.49 16 2 N -0.52 -24.56 3.26 -543.64 -1.77 -26.33 16 3 C 0.32 17.84 7.53 133.23 1.00 18.85 16 4 C -0.47 -24.98 9.04 23.09 0.21 -24.77 16 5 H 0.10 4.78 7.31 -2.91 -0.02 4.76 16 6 C 0.03 1.45 5.50 85.29 0.47 1.92 16 7 N -0.79 -44.65 11.94 21.86 0.26 -44.39 16 8 Si 1.01 37.38 29.56 68.60 2.03 39.41 16 9 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 10 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 11 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 12 N -0.39 -24.20 10.48 -55.02 -0.58 -24.77 16 13 N -0.33 -18.33 11.62 -56.18 -0.65 -18.98 16 14 C 0.06 2.56 8.09 179.18 1.45 4.01 16 15 S 0.00 -0.15 21.78 -56.49 -1.23 -1.38 16 16 C -0.08 -2.18 5.21 71.98 0.37 -1.81 16 17 C -0.06 -0.93 5.34 29.85 0.16 -0.77 16 18 C -0.05 -0.72 5.14 -19.81 -0.10 -0.82 16 19 C -0.12 -1.65 9.68 22.23 0.22 -1.44 16 20 C -0.07 -0.96 9.76 22.54 0.22 -0.74 16 21 C -0.05 -0.84 5.73 -21.36 -0.12 -0.96 16 22 C 0.28 5.82 15.33 88.33 1.35 7.18 16 23 N -0.47 -12.20 18.54 19.00 0.35 -11.85 16 24 C -0.07 -0.96 9.76 22.54 0.22 -0.74 16 25 C -0.12 -1.66 9.68 22.23 0.22 -1.44 16 26 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.09 2.73 7.54 -2.39 -0.02 2.71 16 28 H 0.09 2.58 7.85 -2.39 -0.02 2.56 16 29 H 0.28 14.55 8.30 -92.71 -0.77 13.78 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 2.29 8.14 -2.40 -0.02 2.28 16 32 H 0.10 1.29 8.08 -2.39 -0.02 1.27 16 33 H 0.10 1.28 8.08 -2.39 -0.02 1.26 16 34 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -77.96 348.95 6.57 -71.39 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.10 Total: 13.95 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 7.05 Total: 2.96 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -2.39 Total: -126.33 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.23 Total: -1.38 kcal Total: -77.96 6.57 -71.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594894790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.373 kcal (2) G-P(sol) polarization free energy of solvation -77.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds