Wall clock time and date at job start Tue Mar 31 2020 10:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46823 * 2 1 4 4 C 1.50698 * 109.47681 * 120.00281 * 2 1 3 5 5 H 1.07993 * 120.00148 * 119.99808 * 4 2 1 6 6 C 1.37875 * 119.99524 * 300.00229 * 4 2 1 7 7 N 1.31516 * 120.00474 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99785 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46907 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46778 * 299.99890 * 8 6 4 11 11 H 1.48496 * 109.46778 * 59.99685 * 8 6 4 12 12 N 1.46905 * 109.47186 * 240.00672 * 2 1 3 13 13 C 1.46893 * 111.00230 * 84.99348 * 12 2 1 14 14 C 1.53007 * 109.47075 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47253 * 179.97438 * 14 13 12 16 16 O 1.21300 * 119.99823 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00163 * 179.97438 * 15 14 13 18 18 C 1.40091 * 119.99992 * 175.55201 * 17 15 14 19 19 C 1.38795 * 120.06848 * 34.63308 * 18 17 15 20 20 C 1.38147 * 119.96678 * 179.72375 * 19 18 17 21 21 C 1.38377 * 120.09643 * 0.55227 * 20 19 18 22 22 Cl 1.73605 * 119.93311 * 179.74288 * 21 20 19 23 23 C 1.38365 * 120.13564 * 359.72285 * 21 20 19 24 24 C 1.38306 * 120.02823 * 0.02562 * 23 21 20 25 25 F 1.35098 * 120.04790 * 179.97438 * 24 23 21 26 26 H 1.09001 * 109.46823 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47362 * 299.99434 * 1 2 3 28 28 H 1.08993 * 109.47716 * 60.00074 * 1 2 3 29 29 H 0.97001 * 120.00257 * 179.97438 * 7 6 4 30 30 H 1.00900 * 110.99715 * 208.95502 * 12 2 1 31 31 H 1.08996 * 109.47465 * 300.00167 * 13 12 2 32 32 H 1.09002 * 109.47415 * 60.00480 * 13 12 2 33 33 H 1.09001 * 109.46746 * 299.99768 * 14 13 12 34 34 H 1.09002 * 109.46865 * 59.99827 * 14 13 12 35 35 H 0.97005 * 119.99570 * 355.54774 * 17 15 14 36 36 H 1.07997 * 120.01542 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.94659 * 180.25183 * 20 19 18 38 38 H 1.08003 * 119.98591 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9435 0.8301 2.6034 8 14 2.3227 -1.1196 4.0079 9 1 1.8281 -0.4193 5.2204 10 1 1.8284 -2.5199 4.0080 11 1 3.8077 -1.1189 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5746 15 6 2.6586 0.4056 -4.7519 16 8 2.3271 1.5652 -4.6217 17 7 3.0849 -0.0430 -5.9491 18 6 3.0562 0.8035 -7.0650 19 6 3.3015 2.1613 -6.9143 20 6 3.2783 2.9932 -8.0170 21 6 2.9997 2.4767 -9.2702 22 17 2.9651 3.5271 -10.6520 23 6 2.7490 1.1247 -9.4242 24 6 2.7759 0.2861 -8.3248 25 9 2.5306 -1.0340 -8.4747 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.7089 1.1613 3.4844 30 1 2.9173 -1.1204 -1.0288 31 1 1.0869 0.6164 -2.5525 32 1 2.7587 1.0464 -2.1183 33 1 3.5903 -0.9269 -3.3692 34 1 1.9182 -1.3564 -3.8030 35 1 3.4116 -0.9520 -6.0381 36 1 3.5143 2.5666 -5.9362 37 1 3.4732 4.0490 -7.9000 38 1 2.5321 0.7241 -10.4035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:40 Heat of formation + Delta-G solvation = -64.787304 kcal Electronic energy + Delta-G solvation = -22578.672407 eV Core-core repulsion = 18782.247190 eV Total energy + Delta-G solvation = -3796.425217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.35355 -40.76755 -38.93151 -36.92497 -36.07391 -34.98325 -33.09373 -31.30462 -30.96580 -29.57266 -27.38909 -25.23838 -24.07885 -23.27670 -22.08811 -20.49673 -19.81583 -18.65035 -17.70894 -17.34688 -16.66622 -16.46417 -16.00229 -15.71891 -15.68487 -14.87830 -14.55764 -14.29945 -14.11891 -13.85521 -13.61557 -13.28502 -13.03592 -12.73081 -12.40887 -12.27831 -11.97588 -11.80825 -11.42760 -11.30332 -11.02284 -10.77065 -10.76376 -10.56929 -10.26326 -10.14765 -10.10639 -9.84894 -9.36492 -8.84649 -8.51543 -8.48486 -7.33982 -6.03320 -4.10483 0.48308 0.66424 1.63087 2.33571 2.62863 3.06659 3.29966 3.34825 3.36941 3.70936 4.23576 4.37319 4.47016 4.53852 4.72789 5.02010 5.08259 5.18252 5.24429 5.27843 5.51523 5.61916 5.70536 5.72433 5.75722 5.91406 6.29967 6.38036 6.47893 6.89100 6.97613 7.14635 7.22302 7.48435 7.75505 7.84485 7.88779 8.25834 8.34001 8.62876 8.99225 9.55347 11.02929 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.033365 B = 0.002090 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.004661 B =13397.034408 C =13844.270165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.690 5.690 13 C 0.075 3.925 14 C -0.135 4.135 15 C 0.519 3.481 16 O -0.512 6.512 17 N -0.677 5.677 18 C 0.128 3.872 19 C -0.085 4.085 20 C -0.098 4.098 21 C -0.028 4.028 22 Cl -0.060 7.060 23 C -0.128 4.128 24 C 0.082 3.918 25 F -0.130 7.130 26 H 0.031 0.969 27 H 0.081 0.919 28 H 0.005 0.995 29 H 0.262 0.738 30 H 0.329 0.671 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.416 0.584 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.370 0.832 -25.435 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.321 5.321 13 C -0.056 4.056 14 C -0.175 4.175 15 C 0.308 3.692 16 O -0.386 6.386 17 N -0.323 5.323 18 C 0.032 3.968 19 C -0.105 4.105 20 C -0.117 4.117 21 C -0.056 4.056 22 Cl -0.031 7.031 23 C -0.148 4.148 24 C 0.060 3.940 25 F -0.108 7.108 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.253 0.747 36 H 0.179 0.821 37 H 0.162 0.838 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.371 1.558 -25.376 25.985 hybrid contribution 1.116 -0.577 0.759 1.468 sum 6.487 0.982 -24.617 25.477 Atomic orbital electron populations 1.21717 0.97828 0.99318 0.99482 1.19098 0.92682 0.92423 0.85295 0.97982 1.21205 1.31669 1.12559 0.90436 0.92243 1.24936 0.95057 0.95002 0.99082 1.69891 1.36454 1.22780 1.23618 0.86568 0.79033 0.79752 0.82065 1.21302 1.20188 1.20347 1.60752 1.31891 1.33265 1.06224 1.21631 1.00823 0.93649 0.89475 1.21722 1.04322 0.98754 0.92685 1.21288 0.74987 0.89492 0.83426 1.90714 1.46082 1.18324 1.83432 1.43664 1.64780 1.16475 1.07392 1.17887 1.01163 0.91959 0.85779 1.21288 0.97824 0.90896 1.00512 1.21089 0.99518 1.01251 0.89841 1.20580 1.05112 0.90761 0.89150 1.98387 1.96954 1.65734 1.42052 1.20776 1.03276 0.91757 0.99001 1.17219 1.05219 0.78655 0.92939 1.91518 1.91957 1.31035 1.96320 0.94971 0.90072 0.97624 0.92819 0.85408 0.90954 0.95331 0.88616 0.87624 0.74708 0.82124 0.83760 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.19 37.16 0.34 -2.81 16 2 C 0.21 5.38 2.60 -68.87 -0.18 5.20 16 3 H 0.00 0.07 7.80 -51.93 -0.40 -0.33 16 4 C -0.52 -14.12 8.59 -34.44 -0.30 -14.41 16 5 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.69 -14.17 6.30 -107.95 -0.68 -14.85 16 13 C 0.07 1.32 4.77 -3.82 -0.02 1.30 16 14 C -0.13 -1.66 5.96 -27.88 -0.17 -1.83 16 15 C 0.52 6.54 7.68 -10.99 -0.08 6.45 16 16 O -0.51 -8.18 13.40 5.54 0.07 -8.10 16 17 N -0.68 -6.65 5.23 -9.80 -0.05 -6.70 16 18 C 0.13 1.33 6.32 -83.58 -0.53 0.81 16 19 C -0.08 -0.88 8.70 -39.41 -0.34 -1.22 16 20 C -0.10 -0.86 9.82 -39.56 -0.39 -1.25 16 21 C -0.03 -0.24 6.32 -39.48 -0.25 -0.49 16 22 Cl -0.06 -0.47 28.95 -51.86 -1.50 -1.97 16 23 C -0.13 -1.08 9.80 -39.51 -0.39 -1.46 16 24 C 0.08 0.78 7.31 -39.26 -0.29 0.49 16 25 F -0.13 -1.25 16.96 2.25 0.04 -1.21 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 28 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.33 6.37 8.22 -39.29 -0.32 6.05 16 31 H 0.07 1.40 7.39 -51.93 -0.38 1.01 16 32 H 0.03 0.54 8.01 -51.93 -0.42 0.12 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.42 2.93 8.67 -40.82 -0.35 2.58 16 36 H 0.16 1.85 6.19 -52.49 -0.33 1.53 16 37 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -30.46 341.67 -8.60 -39.06 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.56 Total: 5.03 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.68 Total: -7.63 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.10 Total: -46.38 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.10 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.46 -8.60 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.729 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds